Wall clock time and date at job start Mon Mar 30 2020 01:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99777 * 2 1 4 4 H 1.48496 * 109.46873 * 240.00262 * 3 2 1 5 5 H 1.48503 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46938 * 120.00271 * 3 2 1 7 7 C 1.37876 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47212 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 13 11 16 16 C 1.38234 * 119.99770 * 269.72527 * 15 14 13 17 17 C 1.38239 * 119.99901 * 179.76875 * 16 15 14 18 18 C 1.38238 * 119.99492 * 0.48004 * 17 16 15 19 19 C 1.50706 * 119.99437 * 179.77082 * 18 17 16 20 20 C 1.53005 * 109.47127 * 270.02394 * 19 18 17 21 21 O 1.42895 * 109.46889 * 180.02562 * 20 19 18 22 22 C 1.38225 * 120.00505 * 359.79428 * 18 17 16 23 23 C 1.38232 * 119.99860 * 89.99969 * 15 14 13 24 24 H 0.96993 * 120.00405 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46832 * 60.00036 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00227 * 10 9 7 29 29 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 30 30 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 31 31 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 32 32 H 1.08001 * 120.00330 * 359.97438 * 16 15 14 33 33 H 1.07993 * 120.00120 * 180.25541 * 17 16 15 34 34 H 1.09002 * 109.47512 * 30.02407 * 19 18 17 35 35 H 1.09001 * 109.46797 * 150.02415 * 19 18 17 36 36 H 1.09002 * 109.46935 * 300.00366 * 20 19 18 37 37 H 1.09001 * 109.46812 * 60.00025 * 20 19 18 38 38 H 0.96704 * 114.00007 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.00220 * 179.97438 * 22 18 17 40 40 H 1.07998 * 120.00407 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1343 -0.0008 14 6 1.4334 -7.4031 -0.0008 15 6 2.4128 -8.5485 -0.0009 16 6 2.8575 -9.0774 -1.1981 17 6 3.7595 -10.1250 -1.1983 18 6 4.2091 -10.6500 -0.0012 19 6 5.1886 -11.7954 -0.0014 20 6 4.4236 -13.1205 -0.0014 21 8 5.3523 -14.2066 -0.0010 22 6 3.7601 -10.1248 1.1960 23 6 2.8620 -9.0739 1.1962 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8905 29 1 3.1359 -6.1343 -0.0004 30 1 0.8065 -7.4607 0.8890 31 1 0.8070 -7.4610 -0.8910 32 1 2.5028 -8.6701 -2.1334 33 1 4.1101 -10.5355 -2.1336 34 1 5.8152 -11.7376 -0.8914 35 1 5.8153 -11.7377 0.8886 36 1 3.7970 -13.1784 0.8886 37 1 3.7969 -13.1782 -0.8914 38 1 4.9365 -15.0796 -0.0006 39 1 4.1111 -10.5353 2.1312 40 1 2.5108 -8.6638 2.1315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890638236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:34 Heat of formation + Delta-G solvation = -87.856670 kcal Electronic energy + Delta-G solvation = -19837.858051 eV Core-core repulsion = 16616.429958 eV Total energy + Delta-G solvation = -3221.428093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.02600 -38.93254 -37.39962 -35.10908 -33.42887 -33.00390 -31.22420 -31.02751 -29.48190 -26.43979 -25.01528 -23.04782 -23.02449 -21.52481 -20.83762 -19.64813 -17.99930 -17.04699 -16.31448 -16.26198 -15.60552 -15.37690 -15.26609 -14.98675 -14.71116 -14.66693 -14.40194 -13.70065 -13.12537 -13.10701 -12.93176 -12.63855 -12.31815 -12.15529 -11.86579 -11.71392 -11.32363 -11.24218 -11.14150 -10.89621 -10.60708 -10.44309 -9.93408 -9.65579 -9.31622 -9.20394 -9.09935 -8.78146 -8.76057 -8.30175 -5.94439 -3.98893 0.91842 1.12524 3.25251 3.27259 3.35601 3.40125 3.41948 3.74147 3.90030 4.43105 4.49126 4.49703 4.67516 4.69301 4.76628 4.82138 5.03958 5.09216 5.19118 5.40217 5.44549 5.45622 5.53295 5.55435 5.73795 5.81640 5.88339 6.10358 6.24720 6.26976 6.28506 6.37907 6.67353 6.72616 6.91553 7.12685 7.75721 7.88173 7.90657 8.08968 8.40425 8.79344 9.09569 9.64430 11.16451 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046805 B = 0.002328 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.077419 B =12026.958295 C =12299.341094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.535 6.535 13 N -0.740 5.740 14 C 0.159 3.841 15 C -0.101 4.101 16 C -0.099 4.099 17 C -0.116 4.116 18 C -0.083 4.083 19 C -0.080 4.080 20 C 0.081 3.919 21 O -0.577 6.577 22 C -0.116 4.116 23 C -0.099 4.099 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.398 0.602 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.381 0.619 39 H 0.123 0.877 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.763 -27.209 -0.002 28.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.410 6.410 13 N -0.395 5.395 14 C 0.035 3.965 15 C -0.101 4.101 16 C -0.117 4.117 17 C -0.134 4.134 18 C -0.083 4.083 19 C -0.118 4.118 20 C 0.003 3.997 21 O -0.383 6.383 22 C -0.134 4.134 23 C -0.117 4.117 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.232 0.768 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.228 0.772 39 H 0.141 0.859 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.107 -26.570 -0.003 28.088 hybrid contribution 0.476 0.432 0.000 0.643 sum 9.584 -26.139 -0.002 27.840 Atomic orbital electron populations 1.69988 1.06043 1.26682 1.50138 1.25032 0.94839 0.99225 0.95327 0.86642 0.79528 0.83158 0.78532 1.20258 1.21297 1.20266 1.21193 0.92901 0.91038 1.51460 0.92654 1.18897 0.93181 0.89360 0.98620 1.21868 1.00715 0.91870 1.02503 1.21595 0.88652 0.85585 0.74366 1.90671 1.14478 1.87600 1.48299 1.46275 1.10117 1.05027 1.78062 1.20115 0.92523 0.80926 1.02924 1.20008 0.98907 0.97731 0.93471 1.21137 0.96739 0.95990 0.97847 1.21052 0.97845 0.96972 0.97540 1.19705 0.98018 0.97145 0.93468 1.20464 0.96628 0.90468 1.04205 1.22153 0.91052 0.86334 1.00168 1.86453 1.36830 1.17211 1.97764 1.21050 0.97890 0.96931 0.97539 1.21137 0.96754 0.95969 0.97852 0.92905 0.95818 0.95827 0.90236 0.90247 0.76824 0.90977 0.90984 0.85595 0.85889 0.90189 0.90192 0.93403 0.93395 0.77178 0.85890 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 10 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 11 C 0.51 9.89 7.83 -10.99 -0.09 9.80 16 12 O -0.54 -12.74 15.98 5.56 0.09 -12.65 16 13 N -0.74 -10.55 5.55 -61.47 -0.34 -10.89 16 14 C 0.16 2.00 5.80 -5.19 -0.03 1.97 16 15 C -0.10 -1.03 5.25 -104.62 -0.55 -1.58 16 16 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 17 C -0.12 -0.96 9.70 -39.58 -0.38 -1.35 16 18 C -0.08 -0.67 5.13 -104.62 -0.54 -1.21 16 19 C -0.08 -0.56 5.71 -27.88 -0.16 -0.72 16 20 C 0.08 0.51 7.03 37.16 0.26 0.77 16 21 O -0.58 -3.96 13.66 -35.23 -0.48 -4.45 16 22 C -0.12 -0.96 9.70 -39.58 -0.38 -1.35 16 23 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.40 4.69 8.46 -40.82 -0.35 4.35 16 30 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 31 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.38 0.91 9.12 45.56 0.42 1.33 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -35.46 346.34 -8.50 -43.96 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.37 Total: 0.93 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -3.32 Total: -12.02 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.40 Total: -37.78 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.39 Total: -17.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.46 -8.50 -43.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890638236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.901 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds