Wall clock time and date at job start Mon Mar 30 2020 01:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47474 * 240.00062 * 3 2 1 5 5 H 1.48502 * 109.47227 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47357 * 119.99765 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47478 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47250 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47478 * 179.97438 * 12 11 10 14 14 O 1.21293 * 119.99850 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00613 * 179.97438 * 13 12 11 16 16 C 1.39918 * 120.00146 * 185.27544 * 15 13 12 17 17 C 1.38869 * 120.07176 * 33.29544 * 16 15 13 18 18 C 1.38114 * 119.93014 * 180.02562 * 17 16 15 19 19 C 1.38289 * 120.07012 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.92912 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47097 * 90.00265 * 20 19 18 22 22 C 1.38274 * 120.13758 * 0.25935 * 19 18 17 23 23 C 1.38112 * 120.07482 * 359.49064 * 22 19 18 24 24 H 0.96993 * 120.00177 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47065 * 59.99844 * 9 7 2 26 26 H 1.09005 * 109.47308 * 300.00413 * 9 7 2 27 27 H 1.08999 * 109.47206 * 60.00412 * 10 9 7 28 28 H 1.08996 * 109.47157 * 299.99970 * 10 9 7 29 29 H 1.09002 * 109.47242 * 60.00052 * 11 10 9 30 30 H 1.09000 * 109.47447 * 300.00008 * 11 10 9 31 31 H 1.08999 * 109.47206 * 60.00335 * 12 11 10 32 32 H 1.09001 * 109.47587 * 300.00049 * 12 11 10 33 33 H 0.96997 * 119.99223 * 5.27490 * 15 13 12 34 34 H 1.08005 * 120.03707 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.96855 * 179.97438 * 18 17 16 36 36 H 1.09003 * 109.46633 * 330.00376 * 20 19 18 37 37 H 1.08997 * 109.46849 * 210.00397 * 20 19 18 38 38 H 0.96699 * 113.99949 * 180.02562 * 21 20 19 39 39 H 1.08002 * 119.96502 * 179.74452 * 22 19 18 40 40 H 1.08000 * 120.03994 * 180.25868 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4745 -6.1500 -0.0008 13 6 1.7210 -7.4551 -0.0008 14 8 0.5081 -7.4551 -0.0008 15 7 2.3949 -8.6224 -0.0018 16 6 1.6996 -9.8315 -0.1132 17 6 0.5377 -9.8988 -0.8709 18 6 -0.1465 -11.0937 -0.9784 19 6 0.3244 -12.2224 -0.3330 20 6 -0.4250 -13.5244 -0.4521 21 8 0.0651 -14.2549 -1.5781 22 6 1.4784 -12.1575 0.4260 23 6 2.1701 -10.9669 0.5334 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.8539 -5.0446 -0.8903 30 1 0.8533 -5.0452 0.8896 31 1 3.1011 -6.0928 0.8892 32 1 3.1012 -6.0919 -0.8907 33 1 3.3618 -8.6241 0.0747 34 1 0.1691 -9.0175 -1.3748 35 1 -1.0504 -11.1466 -1.5671 36 1 -1.4876 -13.3210 -0.5854 37 1 -0.2785 -14.1121 0.4541 38 1 -0.3733 -15.1057 -1.7162 39 1 1.8414 -13.0397 0.9323 40 1 3.0736 -10.9178 1.1230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898591541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:30 Heat of formation + Delta-G solvation = -109.964982 kcal Electronic energy + Delta-G solvation = -19881.594349 eV Core-core repulsion = 16659.207568 eV Total energy + Delta-G solvation = -3222.386781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62407 -39.85750 -37.63912 -36.66156 -35.75592 -34.63095 -32.12189 -31.95189 -30.98896 -27.79714 -26.33750 -24.36410 -23.93352 -22.37923 -21.68402 -21.23611 -18.82322 -18.40020 -18.33228 -17.96947 -17.09043 -16.72022 -16.51922 -16.27452 -15.54870 -15.45228 -14.83731 -14.72662 -14.53934 -14.29404 -14.08876 -13.75702 -13.60855 -13.54686 -13.28858 -12.79569 -12.38240 -12.28065 -12.24184 -12.16499 -12.12167 -11.42568 -11.36438 -11.32621 -11.17132 -10.95736 -10.80442 -10.54478 -9.92083 -9.12218 -8.18653 -6.30912 0.15317 0.41554 1.40267 1.44318 1.52146 1.54694 2.01919 2.41986 2.71972 3.13877 3.61054 3.66731 3.87996 3.98228 4.02511 4.13346 4.18969 4.29001 4.42107 4.50507 4.60207 4.67032 4.70651 4.72107 4.82291 4.86662 5.04611 5.17686 5.23351 5.30240 5.34372 5.36719 5.49068 5.56952 5.60804 5.77974 5.88063 6.01576 6.25066 6.40333 6.87540 6.93107 7.11465 7.38624 8.93347 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.057760 B = 0.002239 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.650664 B =12504.305915 C =12830.078544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.511 3.489 14 O -0.564 6.564 15 N -0.663 5.663 16 C 0.139 3.861 17 C -0.151 4.151 18 C -0.093 4.093 19 C -0.125 4.125 20 C 0.120 3.880 21 O -0.590 6.590 22 C -0.082 4.082 23 C -0.146 4.146 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.430 0.570 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.154 0.846 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 -30.030 0.719 30.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.164 4.164 13 C 0.301 3.699 14 O -0.441 6.441 15 N -0.310 5.310 16 C 0.044 3.956 17 C -0.172 4.172 18 C -0.112 4.112 19 C -0.126 4.126 20 C 0.043 3.957 21 O -0.400 6.400 22 C -0.100 4.100 23 C -0.167 4.167 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.270 0.730 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.250 0.750 39 H 0.171 0.829 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.180 -29.332 0.659 29.983 hybrid contribution -0.351 0.816 -0.060 0.890 sum 5.830 -28.516 0.598 29.112 Atomic orbital electron populations 1.70125 1.08068 1.27810 1.51824 1.26112 0.95809 1.03798 0.94826 0.85427 0.78151 0.77663 0.79345 1.18912 1.21131 1.18887 1.21732 0.93771 0.92207 1.50297 0.91498 1.19061 0.94723 0.93848 0.94294 1.21444 0.97810 0.92593 1.01468 1.21261 0.97506 0.93620 1.01149 1.21698 0.98944 0.88476 1.07295 1.21504 0.88017 0.86491 0.73904 1.90723 1.16315 1.87985 1.49109 1.43533 1.11693 1.03329 1.72452 1.18038 0.94325 0.86621 0.96581 1.21164 0.97086 0.98554 1.00369 1.21087 0.99848 0.91835 0.98390 1.19959 0.97682 0.95056 0.99914 1.20989 0.96039 0.89158 0.89498 1.86514 1.66211 1.37528 1.49706 1.21195 0.93330 0.98044 0.97476 1.21200 1.02926 0.91682 1.00844 0.92869 0.99781 0.99721 0.91868 0.91974 0.93827 0.93740 0.85617 0.85796 0.73003 0.87125 0.85266 0.91964 0.90546 0.75042 0.82857 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.28 13.29 21.45 0.28 -58.99 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.98 4.97 29.85 0.15 1.13 16 10 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 11 C -0.10 -3.44 4.50 30.59 0.14 -3.30 16 12 C -0.12 -2.92 5.70 29.85 0.17 -2.75 16 13 C 0.51 13.72 7.57 87.66 0.66 14.39 16 14 O -0.56 -20.83 13.67 -3.07 -0.04 -20.87 16 15 N -0.66 -13.05 5.34 -303.50 -1.62 -14.67 16 16 C 0.14 3.15 6.28 38.15 0.24 3.39 16 17 C -0.15 -4.08 8.66 22.39 0.19 -3.88 16 18 C -0.09 -2.14 9.69 22.25 0.22 -1.92 16 19 C -0.13 -2.36 5.51 -19.84 -0.11 -2.47 16 20 C 0.12 1.54 7.17 71.24 0.51 2.05 16 21 O -0.59 -8.34 13.64 -148.98 -2.03 -10.38 16 22 C -0.08 -1.33 9.69 22.25 0.22 -1.11 16 23 C -0.15 -2.47 9.96 22.39 0.22 -2.25 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.43 4.74 8.82 -92.71 -0.82 3.93 16 34 H 0.11 3.51 6.41 -2.91 -0.02 3.49 16 35 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.06 0.68 8.08 -2.39 -0.02 0.66 16 37 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 38 H 0.40 1.55 9.12 -74.06 -0.68 0.87 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -81.20 342.02 1.63 -79.57 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -0.45 Total: 10.11 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.46 Total: -31.66 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -1.34 Total: -73.67 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -2.07 Total: -31.25 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -81.20 1.63 -79.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898591541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.400 kcal (2) G-P(sol) polarization free energy of solvation -81.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds