Wall clock time and date at job start Mon Mar 30 2020 01:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00217 * 2 1 4 4 H 1.48508 * 109.46862 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47288 * 299.99491 * 3 2 1 6 6 H 1.48500 * 109.47641 * 59.99708 * 3 2 1 7 7 C 1.37878 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00364 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99886 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47239 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99526 * 270.00278 * 10 9 7 12 12 C 1.52998 * 109.46941 * 269.99627 * 11 10 9 13 13 C 1.53009 * 117.49855 * 243.62710 * 12 11 10 14 14 C 1.53000 * 117.49847 * 175.00518 * 12 11 10 15 15 C 1.34774 * 119.99834 * 89.99790 * 10 9 7 16 16 O 1.21278 * 120.00300 * 0.02562 * 15 10 9 17 17 C 1.50704 * 119.99427 * 180.02562 * 15 10 9 18 18 H 1.08998 * 115.51635 * 282.56978 * 17 15 10 19 19 C 1.53052 * 117.45393 * 137.10597 * 17 15 10 20 20 H 1.09007 * 120.03041 * 141.11783 * 19 17 15 21 21 C 1.54610 * 117.86985 * 345.59373 * 19 17 15 22 22 C 1.54910 * 103.56812 * 319.04809 * 21 19 17 23 23 C 1.52480 * 103.10246 * 322.40808 * 22 21 19 24 24 O 1.20761 * 127.58040 * 218.20863 * 23 22 21 25 25 C 1.51830 * 104.84290 * 38.24584 * 23 22 21 26 26 H 1.09004 * 117.25322 * 196.48992 * 25 23 22 27 27 H 0.97002 * 119.99414 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47240 * 60.00163 * 9 7 2 29 29 H 1.09003 * 109.47001 * 300.00069 * 9 7 2 30 30 H 1.08994 * 109.47536 * 30.00152 * 11 10 9 31 31 H 1.09002 * 109.46715 * 149.99897 * 11 10 9 32 32 H 1.08995 * 115.55449 * 29.33106 * 12 11 10 33 33 H 1.09000 * 117.49671 * 359.97438 * 13 12 11 34 34 H 1.08994 * 117.49930 * 145.02409 * 13 12 11 35 35 H 1.08999 * 117.49761 * 214.97953 * 14 12 11 36 36 H 1.08995 * 117.49905 * 359.97438 * 14 12 11 37 37 H 1.08998 * 110.51024 * 200.59679 * 21 19 17 38 38 H 1.09002 * 110.75140 * 77.61843 * 21 19 17 39 39 H 1.09002 * 110.72003 * 203.95986 * 22 21 19 40 40 H 1.09004 * 110.72073 * 80.86694 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0018 11 6 2.6797 -4.1700 -1.2664 12 6 1.7493 -5.3013 -1.7083 13 6 2.3413 -6.7096 -1.7955 14 6 2.0107 -5.9380 -3.0748 15 6 2.6398 -4.1244 1.1695 16 8 2.2446 -3.6633 2.2193 17 6 3.6194 -5.2696 1.1707 18 1 3.1953 -6.2506 0.9565 19 6 4.7797 -5.2046 2.1667 20 1 5.1120 -6.1087 2.6770 21 6 5.0688 -3.8492 2.8521 22 6 4.8898 -2.8186 1.7095 23 6 5.4682 -3.5418 0.4980 24 8 6.1257 -3.0685 -0.3975 25 6 5.0349 -4.9874 0.6645 26 1 5.5574 -5.7367 0.0698 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5566 0.8903 30 1 2.6882 -3.3887 -2.0263 31 1 3.6891 -4.5600 -1.1351 32 1 0.7122 -5.2102 -1.3857 33 1 3.3937 -6.8299 -1.5385 34 1 1.6936 -7.5451 -1.5302 35 1 1.1456 -6.2660 -3.6510 36 1 2.8453 -5.5506 -3.6591 37 1 6.0893 -3.8244 3.2341 38 1 4.3539 -3.6613 3.6532 39 1 5.4514 -1.9084 1.9196 40 1 3.8346 -2.5923 1.5561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906567426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:35 Heat of formation + Delta-G solvation = -7.091247 kcal Electronic energy + Delta-G solvation = -22881.577995 eV Core-core repulsion = 19663.652154 eV Total energy + Delta-G solvation = -3217.925841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17846 -38.50824 -37.39420 -36.64904 -34.46388 -32.58070 -31.06951 -27.98229 -26.47019 -26.30937 -24.59308 -22.40457 -22.28022 -20.69493 -20.30903 -19.27855 -18.11136 -17.12289 -16.52347 -15.78892 -15.64194 -15.29339 -14.85393 -14.44580 -14.26747 -14.10424 -13.96310 -13.32084 -12.99303 -12.71759 -12.31809 -12.15406 -12.09644 -11.54185 -11.43910 -11.29339 -11.25617 -10.93482 -10.82482 -10.67809 -10.47058 -10.27158 -10.11156 -10.06174 -9.81359 -9.60331 -9.34934 -8.82408 -8.46184 -7.76386 -6.07615 -4.12532 1.96982 3.20262 3.29126 3.37039 3.41746 3.52513 3.81009 3.96751 4.20074 4.42734 4.49725 4.57999 4.79279 4.89476 5.04907 5.06872 5.16780 5.27051 5.28758 5.42368 5.50206 5.54126 5.64614 5.69114 5.76507 5.87313 5.94513 5.98720 6.09692 6.11808 6.18487 6.29234 6.46847 6.51878 7.01243 7.37824 7.47920 7.68955 7.88286 8.17878 8.31129 8.82424 8.98930 9.53298 11.00362 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.008137 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.597548 B = 3440.151350 C = 4394.405591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.244 3.756 10 N -0.589 5.589 11 C 0.136 3.864 12 C -0.163 4.163 13 C -0.185 4.185 14 C -0.176 4.176 15 C 0.534 3.466 16 O -0.532 6.532 17 C -0.122 4.122 18 H 0.140 0.860 19 C -0.109 4.109 20 H 0.129 0.871 21 C -0.090 4.090 22 C -0.213 4.213 23 C 0.398 3.602 24 O -0.438 6.438 25 C -0.233 4.233 26 H 0.129 0.871 27 H 0.263 0.737 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.536 -13.618 -0.174 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.125 3.875 10 N -0.320 5.320 11 C 0.012 3.988 12 C -0.182 4.182 13 C -0.222 4.222 14 C -0.214 4.214 15 C 0.320 3.680 16 O -0.410 6.410 17 C -0.143 4.143 18 H 0.158 0.842 19 C -0.128 4.128 20 H 0.147 0.853 21 C -0.127 4.127 22 C -0.250 4.250 23 C 0.272 3.728 24 O -0.311 6.311 25 C -0.252 4.252 26 H 0.147 0.853 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.516 -12.951 -0.104 14.974 hybrid contribution 0.384 0.733 -0.245 0.863 sum 7.900 -12.219 -0.349 14.554 Atomic orbital electron populations 1.69938 1.05961 1.26935 1.50229 1.24895 0.94831 0.99139 0.94932 0.86515 0.80262 0.83533 0.77663 1.19604 1.20910 1.20824 1.21432 0.93352 0.90549 1.51355 0.92319 1.19363 0.87494 0.81974 0.98683 1.48264 1.45310 1.34430 1.03958 1.21131 0.95641 0.94807 0.87242 1.22886 1.01273 0.93824 1.00243 1.23038 1.01425 0.95177 1.02515 1.22894 1.03384 1.04373 0.90752 1.19291 0.81507 0.82683 0.84486 1.90705 1.58392 1.61025 1.30904 1.22374 0.88240 1.00899 1.02819 0.84229 1.23249 0.99490 1.00459 0.89588 0.85338 1.21933 1.01935 0.90830 0.97978 1.23714 1.07161 0.99648 0.94525 1.24423 0.74818 0.88796 0.84716 1.90383 1.31507 1.74325 1.34843 1.23841 1.00517 0.99511 1.01330 0.85316 0.92748 0.94766 0.93637 0.89577 0.90903 0.87344 0.88956 0.89158 0.88958 0.88771 0.90587 0.88836 0.89258 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.53 -14.50 9.01 -34.44 -0.31 -14.81 16 8 H 0.06 1.63 7.24 -52.49 -0.38 1.25 16 9 C 0.24 6.12 5.16 -5.19 -0.03 6.09 16 10 N -0.59 -11.91 2.40 -175.06 -0.42 -12.33 16 11 C 0.14 2.28 5.47 -4.04 -0.02 2.26 16 12 C -0.16 -2.28 6.01 -90.62 -0.54 -2.82 16 13 C -0.18 -2.02 10.18 -26.72 -0.27 -2.30 16 14 C -0.18 -2.03 10.25 -26.73 -0.27 -2.31 16 15 C 0.53 10.30 4.16 -10.98 -0.05 10.25 16 16 O -0.53 -12.18 14.32 5.56 0.08 -12.10 16 17 C -0.12 -1.72 5.04 -91.77 -0.46 -2.19 16 18 H 0.14 1.61 8.14 -51.93 -0.42 1.19 16 19 C -0.11 -1.34 7.05 -89.27 -0.63 -1.97 16 20 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 21 C -0.09 -1.24 6.09 -24.88 -0.15 -1.40 16 22 C -0.21 -3.77 6.08 -25.99 -0.16 -3.93 16 23 C 0.40 6.84 7.02 -27.59 -0.19 6.64 16 24 O -0.44 -8.70 17.99 6.00 0.11 -8.59 16 25 C -0.23 -3.11 5.23 -90.76 -0.47 -3.58 16 26 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 30 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 31 H 0.07 1.12 4.61 -51.93 -0.24 0.88 16 32 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.39 7.75 -51.93 -0.40 0.99 16 39 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.15 3.16 3.40 -51.93 -0.18 2.98 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -31.58 327.24 -9.03 -40.61 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.78 Total: 4.31 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -3.66 Total: -8.35 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.32 Total: -37.59 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.19 Total: -20.69 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.58 -9.03 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906567426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.517 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds