Wall clock time and date at job start Mon Mar 30 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00217 * 2 1 4 4 H 1.48508 * 109.46862 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47288 * 299.99491 * 3 2 1 6 6 H 1.48500 * 109.47641 * 59.99708 * 3 2 1 7 7 C 1.37878 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00364 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99886 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47239 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99526 * 270.00278 * 10 9 7 12 12 C 1.52998 * 109.46941 * 269.99627 * 11 10 9 13 13 C 1.53009 * 117.49855 * 243.62710 * 12 11 10 14 14 C 1.53000 * 117.49847 * 175.00518 * 12 11 10 15 15 C 1.34774 * 119.99834 * 89.99790 * 10 9 7 16 16 O 1.21278 * 120.00300 * 0.02562 * 15 10 9 17 17 C 1.50704 * 119.99427 * 180.02562 * 15 10 9 18 18 H 1.08998 * 115.51635 * 282.56978 * 17 15 10 19 19 C 1.53052 * 117.45393 * 137.10597 * 17 15 10 20 20 H 1.09007 * 120.03041 * 141.11783 * 19 17 15 21 21 C 1.54610 * 117.86985 * 345.59373 * 19 17 15 22 22 C 1.54910 * 103.56812 * 319.04809 * 21 19 17 23 23 C 1.52480 * 103.10246 * 322.40808 * 22 21 19 24 24 O 1.20761 * 127.58040 * 218.20863 * 23 22 21 25 25 C 1.51830 * 104.84290 * 38.24584 * 23 22 21 26 26 H 1.09004 * 117.25322 * 196.48992 * 25 23 22 27 27 H 0.97002 * 119.99414 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47240 * 60.00163 * 9 7 2 29 29 H 1.09003 * 109.47001 * 300.00069 * 9 7 2 30 30 H 1.08994 * 109.47536 * 30.00152 * 11 10 9 31 31 H 1.09002 * 109.46715 * 149.99897 * 11 10 9 32 32 H 1.08995 * 115.55449 * 29.33106 * 12 11 10 33 33 H 1.09000 * 117.49671 * 359.97438 * 13 12 11 34 34 H 1.08994 * 117.49930 * 145.02409 * 13 12 11 35 35 H 1.08999 * 117.49761 * 214.97953 * 14 12 11 36 36 H 1.08995 * 117.49905 * 359.97438 * 14 12 11 37 37 H 1.08998 * 110.51024 * 200.59679 * 21 19 17 38 38 H 1.09002 * 110.75140 * 77.61843 * 21 19 17 39 39 H 1.09002 * 110.72003 * 203.95986 * 22 21 19 40 40 H 1.09004 * 110.72073 * 80.86694 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0018 11 6 2.6797 -4.1700 -1.2664 12 6 1.7493 -5.3013 -1.7083 13 6 2.3413 -6.7096 -1.7955 14 6 2.0107 -5.9380 -3.0748 15 6 2.6398 -4.1244 1.1695 16 8 2.2446 -3.6633 2.2193 17 6 3.6194 -5.2696 1.1707 18 1 3.1953 -6.2506 0.9565 19 6 4.7797 -5.2046 2.1667 20 1 5.1120 -6.1087 2.6770 21 6 5.0688 -3.8492 2.8521 22 6 4.8898 -2.8186 1.7095 23 6 5.4682 -3.5418 0.4980 24 8 6.1257 -3.0685 -0.3975 25 6 5.0349 -4.9874 0.6645 26 1 5.5574 -5.7367 0.0698 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5566 0.8903 30 1 2.6882 -3.3887 -2.0263 31 1 3.6891 -4.5600 -1.1351 32 1 0.7122 -5.2102 -1.3857 33 1 3.3937 -6.8299 -1.5385 34 1 1.6936 -7.5451 -1.5302 35 1 1.1456 -6.2660 -3.6510 36 1 2.8453 -5.5506 -3.6591 37 1 6.0893 -3.8244 3.2341 38 1 4.3539 -3.6613 3.6532 39 1 5.4514 -1.9084 1.9196 40 1 3.8346 -2.5923 1.5561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906567426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:34 Heat of formation + Delta-G solvation = -25.857614 kcal Electronic energy + Delta-G solvation = -22882.391766 eV Core-core repulsion = 19663.652154 eV Total energy + Delta-G solvation = -3218.739612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.48108 -39.97340 -38.57522 -37.98618 -36.11400 -34.61433 -32.35365 -29.88180 -27.85996 -27.52656 -26.26303 -24.10032 -23.16268 -21.92554 -21.54120 -20.49772 -19.57852 -18.64971 -18.32692 -17.28490 -17.11967 -16.83639 -16.18582 -15.99831 -15.56105 -15.42134 -15.33156 -14.71657 -14.43066 -14.19338 -14.00838 -13.74328 -13.35117 -13.25503 -12.93240 -12.73245 -12.64649 -12.52805 -12.29624 -12.24230 -12.05299 -11.71618 -11.51300 -11.22794 -11.16509 -10.94131 -10.72309 -10.67468 -10.25620 -9.47924 -8.26175 -6.39430 0.64242 1.30765 1.32114 1.44124 1.74419 2.15079 2.36074 2.62366 2.94511 2.99975 3.03673 3.34634 3.41731 3.64395 3.80942 3.95762 4.04445 4.06258 4.17497 4.21560 4.32730 4.35211 4.58080 4.71445 4.74420 4.81906 4.86236 4.90285 4.98203 5.02733 5.08587 5.10402 5.18838 5.23036 5.32745 5.35356 5.54555 5.80073 6.02113 6.35366 6.66291 6.75048 7.25189 7.42860 8.80978 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.008137 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.597548 B = 3440.151350 C = 4394.405591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.048 0.952 9 C 0.263 3.737 10 N -0.596 5.596 11 C 0.141 3.859 12 C -0.192 4.192 13 C -0.155 4.155 14 C -0.170 4.170 15 C 0.527 3.473 16 O -0.579 6.579 17 C -0.128 4.128 18 H 0.180 0.820 19 C -0.085 4.085 20 H 0.183 0.817 21 C -0.088 4.088 22 C -0.231 4.231 23 C 0.392 3.608 24 O -0.472 6.472 25 C -0.220 4.220 26 H 0.171 0.829 27 H 0.267 0.733 28 H 0.018 0.982 29 H 0.005 0.995 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.763 -16.619 -0.297 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.142 3.858 10 N -0.326 5.326 11 C 0.018 3.982 12 C -0.211 4.211 13 C -0.192 4.192 14 C -0.207 4.207 15 C 0.317 3.683 16 O -0.460 6.460 17 C -0.148 4.148 18 H 0.197 0.803 19 C -0.102 4.102 20 H 0.200 0.800 21 C -0.125 4.125 22 C -0.269 4.269 23 C 0.269 3.731 24 O -0.347 6.347 25 C -0.239 4.239 26 H 0.189 0.811 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.023 0.977 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.750 -15.984 -0.243 18.724 hybrid contribution -0.350 1.739 -0.183 1.783 sum 9.400 -14.245 -0.426 17.072 Atomic orbital electron populations 1.70038 1.07256 1.27961 1.51022 1.25713 0.95700 1.02531 0.94610 0.85551 0.78671 0.79561 0.78221 1.19829 1.19535 1.20154 1.21628 0.92904 0.91915 1.51000 0.93375 1.18724 0.87880 0.83445 0.95774 1.48192 1.44702 1.33552 1.06139 1.21193 0.97267 0.94899 0.84853 1.22594 0.99736 0.95338 1.03433 1.23193 1.02624 0.92941 1.00409 1.23007 1.03954 1.03454 0.90295 1.20228 0.81576 0.83411 0.83108 1.90671 1.60141 1.62813 1.32396 1.22432 0.87248 0.99730 1.05395 0.80265 1.23577 0.96834 1.01156 0.88680 0.79993 1.21995 1.03510 0.90831 0.96189 1.23754 1.04551 1.01130 0.97425 1.24791 0.73819 0.90947 0.83516 1.90364 1.33189 1.75548 1.35582 1.23800 0.99696 0.97240 1.03165 0.81133 0.92395 0.96419 0.97669 0.92411 0.88964 0.89623 0.86851 0.87421 0.87977 0.88217 0.87278 0.90337 0.90387 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.09 13.29 21.45 0.28 -55.81 16 2 C 0.01 0.81 5.46 84.66 0.46 1.28 16 3 Si 0.96 46.24 29.54 68.60 2.03 48.27 16 4 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.54 -31.17 9.01 25.60 0.23 -30.94 16 8 H 0.05 2.84 7.24 -2.91 -0.02 2.82 16 9 C 0.26 14.21 5.16 85.63 0.44 14.65 16 10 N -0.60 -25.15 2.40 -826.15 -1.98 -27.14 16 11 C 0.14 4.77 5.47 86.38 0.47 5.24 16 12 C -0.19 -5.20 6.01 -10.79 -0.06 -5.27 16 13 C -0.16 -2.77 10.18 30.60 0.31 -2.45 16 14 C -0.17 -3.51 10.25 30.60 0.31 -3.19 16 15 C 0.53 20.58 4.16 87.66 0.36 20.94 16 16 O -0.58 -27.69 14.32 -3.02 -0.04 -27.73 16 17 C -0.13 -3.16 5.04 -11.54 -0.06 -3.22 16 18 H 0.18 3.11 8.14 -2.39 -0.02 3.09 16 19 C -0.08 -1.68 7.05 -9.92 -0.07 -1.75 16 20 H 0.18 1.85 8.14 -2.38 -0.02 1.83 16 21 C -0.09 -2.27 6.09 31.80 0.19 -2.08 16 22 C -0.23 -8.30 6.08 31.07 0.19 -8.11 16 23 C 0.39 13.02 7.02 30.04 0.21 13.23 16 24 O -0.47 -18.55 17.99 -1.45 -0.03 -18.58 16 25 C -0.22 -4.95 5.23 -10.89 -0.06 -5.00 16 26 H 0.17 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.02 0.99 8.07 -2.39 -0.02 0.98 16 29 H 0.01 0.32 7.42 -2.39 -0.02 0.30 16 30 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 31 H 0.09 2.70 4.61 -2.39 -0.01 2.69 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.11 1.60 8.03 -2.39 -0.02 1.58 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.29 7.75 -2.39 -0.02 2.27 16 39 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.11 4.86 3.40 -2.39 -0.01 4.86 16 Total: -1.00 -75.89 327.24 4.24 -71.65 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.04 Total: 16.02 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 2.94 Total: -6.68 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -1.70 Total: -82.94 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -0.07 Total: -46.31 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -75.89 4.24 -71.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906567426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.788 kcal (2) G-P(sol) polarization free energy of solvation -75.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds