Wall clock time and date at job start Mon Mar 30 2020 01:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99634 * 2 1 4 4 H 1.48500 * 109.47360 * 270.00342 * 3 2 1 5 5 H 1.48500 * 109.47083 * 30.00792 * 3 2 1 6 6 H 1.48502 * 109.46588 * 150.00089 * 3 2 1 7 7 C 1.37873 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99650 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99965 * 359.71988 * 7 2 1 10 10 C 1.50697 * 109.47137 * 180.27849 * 9 7 2 11 11 C 1.38286 * 119.92698 * 269.72586 * 10 9 7 12 12 C 1.38122 * 120.06639 * 179.76605 * 11 10 9 13 13 C 1.38862 * 119.92875 * 0.50570 * 12 11 10 14 14 N 1.39929 * 120.07099 * 179.72592 * 13 12 11 15 15 C 1.34780 * 120.00330 * 213.31493 * 14 13 12 16 16 O 1.21284 * 119.99434 * 5.26765 * 15 14 13 17 17 C 1.50698 * 120.00120 * 185.27166 * 15 14 13 18 18 C 1.52998 * 109.46870 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47050 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47338 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47387 * 179.97438 * 20 19 18 22 22 C 1.38871 * 119.86473 * 359.74908 * 13 12 11 23 23 C 1.38112 * 119.92493 * 359.97438 * 22 13 12 24 24 H 0.97000 * 119.99850 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47375 * 300.27603 * 9 7 2 26 26 H 1.08997 * 109.47358 * 60.27581 * 9 7 2 27 27 H 1.07996 * 119.96599 * 0.02562 * 11 10 9 28 28 H 1.08006 * 120.03084 * 180.25302 * 12 11 10 29 29 H 0.97001 * 119.99846 * 33.30353 * 14 13 12 30 30 H 1.09003 * 109.47024 * 299.99539 * 17 15 14 31 31 H 1.08999 * 109.46753 * 59.99787 * 17 15 14 32 32 H 1.09003 * 109.46894 * 299.99586 * 18 17 15 33 33 H 1.08995 * 109.47423 * 59.99835 * 18 17 15 34 34 H 1.09003 * 109.46615 * 299.99366 * 19 18 17 35 35 H 1.08995 * 109.47461 * 59.99468 * 19 18 17 36 36 H 1.08996 * 109.47437 * 299.99848 * 20 19 18 37 37 H 1.09008 * 109.47175 * 59.99744 * 20 19 18 38 38 H 0.96703 * 114.00466 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.04284 * 179.97438 * 22 13 12 40 40 H 1.08005 * 119.96508 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 0.0053 10 6 2.2304 -3.6445 0.0103 11 6 2.6744 -4.1779 -1.1858 12 6 3.5756 -5.2245 -1.1846 13 6 4.0278 -5.7480 0.0195 14 7 4.9365 -6.8121 0.0242 15 6 4.8869 -7.7364 1.0039 16 8 3.9968 -7.7004 1.8270 17 6 5.9375 -8.8143 1.0768 18 6 5.6507 -9.7259 2.2716 19 6 6.7177 -10.8199 2.3460 20 6 6.4314 -11.7312 3.5412 21 8 7.4275 -12.7534 3.6104 22 6 3.5761 -5.2136 1.2190 23 6 2.6792 -4.1633 1.2110 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5529 0.8955 26 1 0.6244 -2.5608 -0.8844 27 1 2.3192 -3.7729 -2.1219 28 1 3.9251 -5.6380 -2.1192 29 1 5.6020 -6.8847 -0.6778 30 1 5.9191 -9.4022 0.1591 31 1 6.9197 -8.3569 1.1957 32 1 5.6689 -9.1383 3.1895 33 1 4.6686 -10.1832 2.1523 34 1 6.7000 -11.4077 1.4282 35 1 7.6997 -10.3623 2.4655 36 1 6.4493 -11.1433 4.4589 37 1 5.4492 -12.1889 3.4221 38 1 7.3089 -13.3691 4.3465 39 1 3.9256 -5.6188 2.1571 40 1 2.3271 -3.7475 2.1435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:10 Heat of formation + Delta-G solvation = -87.337659 kcal Electronic energy + Delta-G solvation = -20024.230733 eV Core-core repulsion = 16802.825146 eV Total energy + Delta-G solvation = -3221.405587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36011 -38.29861 -37.51502 -35.04969 -34.60942 -33.01857 -30.82082 -30.30930 -29.56620 -26.67620 -24.57127 -23.02933 -22.38866 -21.55641 -20.58068 -19.94411 -17.70213 -17.51619 -16.79008 -16.49588 -16.29562 -15.47449 -14.99201 -14.73167 -14.37019 -14.21785 -13.96213 -13.62552 -13.09972 -12.83312 -12.62870 -12.35771 -12.25420 -11.98791 -11.96596 -11.38181 -11.32703 -11.27219 -11.07577 -10.81571 -10.61182 -10.36472 -10.35581 -10.04672 -9.83781 -9.42300 -9.25482 -8.41770 -8.29212 -7.37937 -6.02998 -4.07107 1.84735 2.05678 2.71657 3.07808 3.30568 3.36841 3.41065 3.81762 4.37587 4.45280 4.53669 4.57028 4.69921 4.87775 4.95675 5.00609 5.30528 5.31547 5.36959 5.37802 5.44166 5.55494 5.57332 5.86690 5.93762 5.99865 6.06462 6.11890 6.20072 6.64133 6.77890 6.90815 7.16552 7.20149 7.20735 7.49796 7.53041 7.71113 7.87223 7.92709 8.17897 8.33287 8.98195 9.56529 11.06541 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043978 B = 0.002495 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.522683 B =11219.836831 C =11329.236236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.043 4.043 11 C -0.108 4.108 12 C -0.144 4.144 13 C 0.104 3.896 14 N -0.670 5.670 15 C 0.506 3.494 16 O -0.522 6.522 17 C -0.138 4.138 18 C -0.103 4.103 19 C -0.120 4.120 20 C 0.074 3.926 21 O -0.578 6.578 22 C -0.117 4.117 23 C -0.108 4.108 24 H 0.262 0.738 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.405 0.595 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.380 0.620 39 H 0.123 0.877 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.537 -21.108 2.327 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.043 4.043 11 C -0.127 4.127 12 C -0.164 4.164 13 C 0.011 3.989 14 N -0.315 5.315 15 C 0.294 3.706 16 O -0.398 6.398 17 C -0.178 4.178 18 C -0.141 4.141 19 C -0.158 4.158 20 C -0.004 4.004 21 O -0.384 6.384 22 C -0.137 4.137 23 C -0.127 4.127 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.140 0.860 28 H 0.132 0.868 29 H 0.240 0.760 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.226 0.774 39 H 0.141 0.859 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.996 -20.685 2.421 24.549 hybrid contribution 0.565 0.692 0.053 0.895 sum 13.560 -19.993 2.475 24.285 Atomic orbital electron populations 1.69963 1.06018 1.26786 1.50539 1.25024 0.94895 0.99257 0.95250 0.86536 0.79833 0.83189 0.78138 1.20611 1.21175 1.19828 1.21063 0.93039 0.89875 1.50904 0.92470 1.18353 0.92574 0.89591 0.98418 1.20718 0.96462 0.95286 0.91858 1.20894 0.97379 0.95858 0.98564 1.20746 1.00289 0.99874 0.95515 1.17532 0.96087 0.90838 0.94400 1.43465 1.34565 1.24791 1.28697 1.20805 0.86483 0.82246 0.81091 1.90735 1.35559 1.73866 1.39596 1.21647 0.98552 0.96242 1.01318 1.21243 0.99052 0.95804 0.98004 1.21530 0.99733 0.96348 0.98196 1.22201 0.90625 0.89217 0.98348 1.86457 1.52965 1.44115 1.54835 1.20973 0.99501 0.96567 0.96686 1.21000 0.97508 0.95626 0.98523 0.92856 0.95275 0.95306 0.86003 0.86823 0.75988 0.88704 0.88560 0.90785 0.90805 0.91138 0.91114 0.93447 0.93479 0.77350 0.85931 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.35 9.09 -34.44 -0.31 -14.67 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.05 1.23 5.10 -29.04 -0.15 1.09 16 10 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16 11 C -0.11 -2.10 9.69 -39.61 -0.38 -2.49 16 12 C -0.14 -2.36 9.96 -39.39 -0.39 -2.75 16 13 C 0.10 1.71 6.28 -83.70 -0.53 1.18 16 14 N -0.67 -8.17 5.34 -9.86 -0.05 -8.22 16 15 C 0.51 6.26 7.57 -10.98 -0.08 6.18 16 16 O -0.52 -8.67 13.67 5.55 0.08 -8.59 16 17 C -0.14 -1.05 5.70 -27.88 -0.16 -1.21 16 18 C -0.10 -0.83 4.50 -26.73 -0.12 -0.95 16 19 C -0.12 -0.85 5.58 -26.73 -0.15 -1.00 16 20 C 0.07 0.51 7.05 37.16 0.26 0.77 16 21 O -0.58 -4.40 13.66 -35.23 -0.48 -4.88 16 22 C -0.12 -2.19 8.66 -39.39 -0.34 -2.53 16 23 C -0.11 -2.23 9.69 -39.61 -0.38 -2.61 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 26 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 27 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 28 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.41 3.39 8.82 -40.82 -0.36 3.03 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.30 8.14 -51.92 -0.42 -0.13 16 38 H 0.38 1.18 9.12 45.56 0.42 1.60 16 39 H 0.12 2.25 6.41 -52.49 -0.34 1.91 16 40 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -34.21 342.02 -8.26 -42.47 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.31 Total: 2.24 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -3.37 Total: -18.94 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.68 Total: -34.02 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.41 Total: -13.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.21 -8.26 -42.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.870 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds