Wall clock time and date at job start Mon Mar 30 2020 01:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86807 * 119.99634 * 2 1 4 4 H 1.48500 * 109.47360 * 270.00342 * 3 2 1 5 5 H 1.48500 * 109.47083 * 30.00792 * 3 2 1 6 6 H 1.48502 * 109.46588 * 150.00089 * 3 2 1 7 7 C 1.37873 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99650 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99965 * 359.71988 * 7 2 1 10 10 C 1.50697 * 109.47137 * 180.27849 * 9 7 2 11 11 C 1.38286 * 119.92698 * 269.72586 * 10 9 7 12 12 C 1.38122 * 120.06639 * 179.76605 * 11 10 9 13 13 C 1.38862 * 119.92875 * 0.50570 * 12 11 10 14 14 N 1.39929 * 120.07099 * 179.72592 * 13 12 11 15 15 C 1.34780 * 120.00330 * 213.31493 * 14 13 12 16 16 O 1.21284 * 119.99434 * 5.26765 * 15 14 13 17 17 C 1.50698 * 120.00120 * 185.27166 * 15 14 13 18 18 C 1.52998 * 109.46870 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47050 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47338 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47387 * 179.97438 * 20 19 18 22 22 C 1.38871 * 119.86473 * 359.74908 * 13 12 11 23 23 C 1.38112 * 119.92493 * 359.97438 * 22 13 12 24 24 H 0.97000 * 119.99850 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47375 * 300.27603 * 9 7 2 26 26 H 1.08997 * 109.47358 * 60.27581 * 9 7 2 27 27 H 1.07996 * 119.96599 * 0.02562 * 11 10 9 28 28 H 1.08006 * 120.03084 * 180.25302 * 12 11 10 29 29 H 0.97001 * 119.99846 * 33.30353 * 14 13 12 30 30 H 1.09003 * 109.47024 * 299.99539 * 17 15 14 31 31 H 1.08999 * 109.46753 * 59.99787 * 17 15 14 32 32 H 1.09003 * 109.46894 * 299.99586 * 18 17 15 33 33 H 1.08995 * 109.47423 * 59.99835 * 18 17 15 34 34 H 1.09003 * 109.46615 * 299.99366 * 19 18 17 35 35 H 1.08995 * 109.47461 * 59.99468 * 19 18 17 36 36 H 1.08996 * 109.47437 * 299.99848 * 20 19 18 37 37 H 1.09008 * 109.47175 * 59.99744 * 20 19 18 38 38 H 0.96703 * 114.00466 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.04284 * 179.97438 * 22 13 12 40 40 H 1.08005 * 119.96508 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 0.0053 10 6 2.2304 -3.6445 0.0103 11 6 2.6744 -4.1779 -1.1858 12 6 3.5756 -5.2245 -1.1846 13 6 4.0278 -5.7480 0.0195 14 7 4.9365 -6.8121 0.0242 15 6 4.8869 -7.7364 1.0039 16 8 3.9968 -7.7004 1.8270 17 6 5.9375 -8.8143 1.0768 18 6 5.6507 -9.7259 2.2716 19 6 6.7177 -10.8199 2.3460 20 6 6.4314 -11.7312 3.5412 21 8 7.4275 -12.7534 3.6104 22 6 3.5761 -5.2136 1.2190 23 6 2.6792 -4.1633 1.2110 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5529 0.8955 26 1 0.6244 -2.5608 -0.8844 27 1 2.3192 -3.7729 -2.1219 28 1 3.9251 -5.6380 -2.1192 29 1 5.6020 -6.8847 -0.6778 30 1 5.9191 -9.4022 0.1591 31 1 6.9197 -8.3569 1.1957 32 1 5.6689 -9.1383 3.1895 33 1 4.6686 -10.1832 2.1523 34 1 6.7000 -11.4077 1.4282 35 1 7.6997 -10.3623 2.4655 36 1 6.4493 -11.1433 4.4589 37 1 5.4492 -12.1889 3.4221 38 1 7.3089 -13.3691 4.3465 39 1 3.9256 -5.6188 2.1571 40 1 2.3271 -3.7475 2.1435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928401812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:09 Heat of formation + Delta-G solvation = -111.218159 kcal Electronic energy + Delta-G solvation = -20025.266269 eV Core-core repulsion = 16802.825146 eV Total energy + Delta-G solvation = -3222.441123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49939 -39.64557 -38.08821 -36.32424 -35.36428 -34.96634 -32.36869 -31.78693 -30.48646 -28.35475 -25.71301 -24.53589 -23.82246 -22.37234 -21.79983 -21.12959 -18.69815 -18.48533 -18.25932 -17.81450 -17.17299 -16.82508 -16.32006 -15.93959 -15.65964 -15.50004 -14.78388 -14.60899 -14.51400 -14.47418 -14.25009 -13.67158 -13.30004 -13.22839 -12.92513 -12.75638 -12.64511 -12.61304 -12.46726 -12.02121 -11.86345 -11.67165 -11.66171 -11.53366 -11.08797 -10.86810 -10.74341 -10.60442 -9.77574 -8.86487 -8.18499 -6.33468 0.43557 0.55921 1.39495 1.41089 1.52428 1.66463 2.10690 2.39893 3.00074 3.10466 3.31583 3.71143 3.99285 4.02361 4.11933 4.14824 4.35425 4.37068 4.41087 4.48132 4.60984 4.64820 4.71586 4.80881 4.84016 4.87169 5.01248 5.10644 5.29516 5.32035 5.33470 5.40381 5.41951 5.50316 5.60634 5.75166 6.07356 6.11963 6.24824 6.51863 6.79178 6.87960 7.21928 7.34955 8.89414 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043978 B = 0.002495 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.522683 B =11219.836831 C =11329.236236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.077 4.077 11 C -0.114 4.114 12 C -0.129 4.129 13 C 0.119 3.881 14 N -0.658 5.658 15 C 0.503 3.497 16 O -0.569 6.569 17 C -0.126 4.126 18 C -0.100 4.100 19 C -0.114 4.114 20 C 0.069 3.931 21 O -0.596 6.596 22 C -0.125 4.125 23 C -0.121 4.121 24 H 0.265 0.735 25 H -0.002 1.002 26 H 0.007 0.993 27 H 0.126 0.874 28 H 0.160 0.840 29 H 0.429 0.571 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.397 0.603 39 H 0.123 0.877 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.515 -22.437 1.065 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.078 4.078 11 C -0.133 4.133 12 C -0.149 4.149 13 C 0.025 3.975 14 N -0.305 5.305 15 C 0.293 3.707 16 O -0.447 6.447 17 C -0.165 4.165 18 C -0.138 4.138 19 C -0.152 4.152 20 C -0.008 4.008 21 O -0.405 6.405 22 C -0.145 4.145 23 C -0.140 4.140 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.025 0.975 27 H 0.144 0.856 28 H 0.178 0.822 29 H 0.268 0.732 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.246 0.754 39 H 0.141 0.859 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.015 -22.051 1.144 27.277 hybrid contribution -0.339 0.949 0.482 1.117 sum 15.677 -21.102 1.626 26.338 Atomic orbital electron populations 1.70092 1.07709 1.27940 1.51353 1.25974 0.95812 1.03234 0.94632 0.85406 0.78496 0.78243 0.78665 1.19395 1.20604 1.19085 1.21378 0.93111 0.91143 1.50843 0.92618 1.18091 0.92887 0.91259 0.95781 1.20410 0.97816 0.95742 0.93793 1.20998 0.98040 0.96722 0.97500 1.21060 0.98403 0.98134 0.97312 1.17635 0.95405 0.90898 0.93523 1.43441 1.34099 1.23350 1.29609 1.21734 0.86585 0.82566 0.79788 1.90732 1.37690 1.75038 1.41245 1.21701 0.97701 0.94758 1.02377 1.21178 0.98855 0.96018 0.97746 1.21458 0.99294 0.95955 0.98481 1.22250 0.90718 0.89320 0.98555 1.86402 1.53303 1.44689 1.56102 1.20993 0.99428 0.96123 0.97964 1.20921 0.98662 0.96782 0.97655 0.92586 0.98335 0.97505 0.85601 0.82243 0.73204 0.85589 0.85829 0.92281 0.92139 0.90583 0.90736 0.93235 0.93145 0.75355 0.85897 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.53 -30.63 9.09 25.60 0.23 -30.39 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.06 3.14 5.10 29.10 0.15 3.28 16 10 C -0.08 -3.54 5.07 -19.84 -0.10 -3.64 16 11 C -0.11 -4.38 9.69 22.25 0.22 -4.16 16 12 C -0.13 -3.86 9.96 22.39 0.22 -3.64 16 13 C 0.12 3.65 6.28 38.15 0.24 3.89 16 14 N -0.66 -13.63 5.34 -303.51 -1.62 -15.26 16 15 C 0.50 11.06 7.57 87.66 0.66 11.73 16 16 O -0.57 -18.33 13.67 -3.04 -0.04 -18.38 16 17 C -0.13 -1.44 5.70 29.85 0.17 -1.27 16 18 C -0.10 -1.41 4.50 30.59 0.14 -1.27 16 19 C -0.11 -1.33 5.58 30.59 0.17 -1.16 16 20 C 0.07 0.85 7.05 71.98 0.51 1.36 16 21 O -0.60 -8.03 13.66 -148.98 -2.03 -10.07 16 22 C -0.12 -4.64 8.66 22.39 0.19 -4.45 16 23 C -0.12 -5.23 9.69 22.25 0.22 -5.01 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 26 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 27 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 28 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 29 H 0.43 4.97 8.82 -92.71 -0.82 4.16 16 30 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 33 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.40 1.87 9.12 -74.06 -0.68 1.19 16 39 H 0.12 4.54 6.41 -2.91 -0.02 4.52 16 40 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -77.19 342.02 1.65 -75.54 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -0.45 Total: 12.27 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 3.48 Total: -34.19 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -1.34 Total: -71.93 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -2.08 Total: -28.44 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.19 1.65 -75.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.674 kcal (2) G-P(sol) polarization free energy of solvation -77.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds