Wall clock time and date at job start Mon Mar 30 2020 01:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99771 * 2 1 4 4 H 1.48503 * 109.47062 * 90.00440 * 3 2 1 5 5 H 1.48501 * 109.47218 * 209.99918 * 3 2 1 6 6 H 1.48497 * 109.47081 * 330.00262 * 3 2 1 7 7 C 1.37876 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00489 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99639 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47290 * 300.00273 * 9 7 2 11 11 O 1.42898 * 109.47129 * 59.99980 * 9 7 2 12 12 C 1.53003 * 109.47018 * 179.97438 * 9 7 2 13 13 N 1.46897 * 109.46900 * 180.02562 * 12 9 7 14 14 C 1.46902 * 111.00109 * 185.25846 * 13 12 9 15 15 C 1.52998 * 110.72731 * 298.04275 * 14 13 12 16 16 O 1.42891 * 109.47374 * 305.28969 * 15 14 13 17 17 C 1.54340 * 110.82571 * 174.41727 * 14 13 12 18 18 C 1.51367 * 105.16922 * 215.43276 * 17 14 13 19 19 C 1.38506 * 130.38695 * 197.19020 * 18 17 14 20 20 C 1.38095 * 120.21196 * 179.97438 * 19 18 17 21 21 C 1.38253 * 119.93838 * 0.02562 * 20 19 18 22 22 C 1.38106 * 119.93504 * 359.97438 * 21 20 19 23 23 C 1.38212 * 109.76192 * 17.18619 * 18 17 14 24 24 C 1.51362 * 109.75732 * 0.02562 * 23 18 17 25 25 H 0.97001 * 119.99687 * 180.02562 * 1 2 3 26 26 H 0.96705 * 114.00234 * 59.99905 * 11 9 7 27 27 H 1.08999 * 109.46759 * 299.99915 * 12 9 7 28 28 H 1.08997 * 109.46851 * 60.00133 * 12 9 7 29 29 H 1.00907 * 111.00382 * 61.30745 * 13 12 9 30 30 H 1.09006 * 109.47269 * 65.29591 * 15 14 13 31 31 H 1.09002 * 109.46946 * 185.28645 * 15 14 13 32 32 H 0.96704 * 114.00442 * 180.02562 * 16 15 14 33 33 H 1.09004 * 110.29835 * 334.35117 * 17 14 13 34 34 H 1.08996 * 110.30442 * 96.50126 * 17 14 13 35 35 H 1.08002 * 119.89287 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.03360 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.03382 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.88905 * 179.97438 * 22 21 20 39 39 H 1.08998 * 110.30684 * 223.88371 * 24 23 18 40 40 H 1.09008 * 110.38713 * 101.77728 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 1 0.6248 -2.5563 0.8919 11 8 0.4291 -2.5757 -1.1647 12 6 2.2454 -3.6621 0.0015 13 7 1.5109 -4.9342 0.0020 14 6 2.4305 -6.0730 0.1274 15 6 3.3910 -6.1269 -1.0622 16 8 2.6420 -6.1443 -2.2789 17 6 1.6489 -7.3965 0.2675 18 6 2.4722 -8.2444 1.2133 19 6 2.4396 -9.6077 1.4557 20 6 3.2996 -10.1702 2.3782 21 6 4.1961 -9.3708 3.0627 22 6 4.2302 -8.0113 2.8224 23 6 3.3685 -7.4452 1.8975 24 6 3.2084 -6.0054 1.4590 25 1 -0.4850 -0.8401 0.0004 26 1 0.9209 -2.5309 -1.9961 27 1 2.8713 -3.6047 -0.8891 28 1 2.8727 -3.6039 0.8909 29 1 0.9381 -5.0215 -0.8241 30 1 4.0385 -5.2501 -1.0465 31 1 3.9996 -7.0289 -0.9972 32 1 3.1878 -6.1788 -3.0764 33 1 0.6614 -7.2097 0.6894 34 1 1.5603 -7.8878 -0.7014 35 1 1.7393 -10.2328 0.9216 36 1 3.2715 -11.2336 2.5653 37 1 4.8692 -9.8091 3.7848 38 1 4.9304 -7.3874 3.3578 39 1 4.1848 -5.5467 1.3032 40 1 2.6413 -5.4432 2.2010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929645947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:24 Heat of formation + Delta-G solvation = -83.970475 kcal Electronic energy + Delta-G solvation = -21709.688958 eV Core-core repulsion = 18488.429383 eV Total energy + Delta-G solvation = -3221.259575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48793 -37.97216 -36.23438 -35.38077 -32.86622 -32.05022 -31.47697 -29.15935 -27.48759 -26.91515 -25.66774 -23.71479 -21.84872 -21.29252 -20.55137 -19.18104 -17.38721 -17.18548 -16.46119 -15.92013 -15.57861 -15.13983 -14.85623 -14.73663 -13.98396 -13.75987 -13.39921 -13.33776 -13.21036 -12.99051 -12.66080 -12.56964 -12.18201 -12.04302 -11.56262 -11.37236 -11.21424 -11.02146 -10.82446 -10.75159 -10.53836 -10.12044 -10.09075 -9.97523 -9.23090 -8.86918 -8.53611 -8.43860 -8.05391 -7.82961 -6.32318 -4.15636 1.30082 1.32217 3.42271 3.45302 3.61427 3.69330 4.02682 4.38135 4.47797 4.57058 4.78328 4.92363 4.95241 4.98745 5.16489 5.26467 5.37811 5.43695 5.46122 5.51816 5.68436 5.81272 5.82459 5.89198 6.00249 6.02878 6.13576 6.16960 6.28879 6.32037 6.38883 6.42118 6.64147 6.77299 6.93886 7.46305 7.55627 7.65787 7.91791 8.12363 8.38778 8.89444 9.17196 9.70757 11.08092 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028101 B = 0.003994 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.152247 B = 7008.374117 C = 7413.112353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.035 3.965 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.650 4.650 8 H 0.047 0.953 9 C 0.217 3.783 10 H 0.055 0.945 11 O -0.580 6.580 12 C 0.042 3.958 13 N -0.665 5.665 14 C 0.119 3.881 15 C 0.055 3.945 16 O -0.566 6.566 17 C -0.070 4.070 18 C -0.089 4.089 19 C -0.110 4.110 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.108 4.108 23 C -0.091 4.091 24 C -0.070 4.070 25 H 0.286 0.714 26 H 0.350 0.650 27 H 0.020 0.980 28 H 0.064 0.936 29 H 0.353 0.647 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.377 0.623 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.067 -18.551 1.136 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.174 4.174 3 Si 0.897 3.103 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.689 4.689 8 H 0.065 0.935 9 C 0.160 3.840 10 H 0.073 0.927 11 O -0.384 6.384 12 C -0.086 4.086 13 N -0.297 5.297 14 C 0.027 3.973 15 C -0.025 4.025 16 O -0.371 6.371 17 C -0.107 4.107 18 C -0.089 4.089 19 C -0.128 4.128 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.126 4.126 23 C -0.092 4.092 24 C -0.108 4.108 25 H 0.098 0.902 26 H 0.194 0.806 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.173 0.827 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.224 0.776 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.718 -16.900 2.688 18.772 hybrid contribution 1.833 -1.711 -1.533 2.939 sum 9.552 -18.610 1.155 20.950 Atomic orbital electron populations 1.70591 1.06912 1.32424 1.42786 1.25759 0.96519 1.02377 0.92793 0.83577 0.74642 0.75311 0.76741 1.21427 1.21628 1.20981 1.22446 0.94266 0.92645 1.59518 0.93472 1.19562 0.88559 0.90422 0.85483 0.92699 1.86497 1.39402 1.96467 1.16051 1.22699 0.97195 0.89530 0.99219 1.60712 1.21907 1.00368 1.46683 1.21499 0.91745 0.92300 0.91785 1.22816 0.94339 0.99670 0.85662 1.86430 1.37505 1.97580 1.15553 1.21056 0.98819 0.92682 0.98124 1.20649 0.96980 0.93434 0.97844 1.20619 0.99601 0.93707 0.98857 1.20992 0.96518 0.99599 0.97114 1.20993 0.99470 0.93564 1.00255 1.20633 0.99052 0.94936 0.98007 1.20624 0.96054 0.95992 0.96492 1.21091 1.00437 0.92599 0.96625 0.90238 0.80595 0.96151 0.91735 0.82659 0.93302 0.93819 0.77615 0.88843 0.90420 0.86371 0.86137 0.86110 0.86300 0.90957 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.53 55.43 0.75 -26.76 16 2 C 0.03 0.99 5.40 -17.82 -0.10 0.90 16 3 Si 1.07 25.13 29.90 -169.99 -5.08 20.05 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.65 -18.15 8.76 -34.44 -0.30 -18.45 16 8 H 0.05 1.30 7.74 -52.49 -0.41 0.89 16 9 C 0.22 5.50 2.70 -27.88 -0.08 5.43 16 10 H 0.06 1.55 8.01 -51.93 -0.42 1.13 16 11 O -0.58 -14.66 11.45 -35.23 -0.40 -15.06 16 12 C 0.04 0.87 4.68 -3.82 -0.02 0.85 16 13 N -0.67 -12.02 6.02 -98.53 -0.59 -12.61 16 14 C 0.12 1.77 0.60 -130.18 -0.08 1.69 16 15 C 0.06 0.75 5.41 37.16 0.20 0.95 16 16 O -0.57 -7.55 12.67 -35.23 -0.45 -8.00 16 17 C -0.07 -0.96 5.99 -26.85 -0.16 -1.12 16 18 C -0.09 -1.16 6.14 -104.20 -0.64 -1.80 16 19 C -0.11 -1.25 10.04 -39.53 -0.40 -1.64 16 20 C -0.12 -1.26 10.05 -39.63 -0.40 -1.66 16 21 C -0.12 -1.28 10.05 -39.62 -0.40 -1.68 16 22 C -0.11 -1.25 10.04 -39.53 -0.40 -1.65 16 23 C -0.09 -1.20 6.14 -104.21 -0.64 -1.84 16 24 C -0.07 -1.00 4.67 -26.84 -0.13 -1.12 16 25 H 0.29 8.99 6.47 -40.82 -0.26 8.73 16 26 H 0.35 8.02 9.04 45.56 0.41 8.43 16 27 H 0.02 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.06 1.32 6.94 -51.93 -0.36 0.96 16 29 H 0.35 6.72 7.75 -39.29 -0.30 6.41 16 30 H 0.05 0.69 6.97 -51.93 -0.36 0.33 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.38 3.37 9.12 45.56 0.42 3.78 16 33 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 34 H 0.08 1.03 7.65 -51.93 -0.40 0.64 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 40 H 0.10 1.56 7.95 -51.92 -0.41 1.15 16 LS Contribution 326.44 15.07 4.92 4.92 Total: -1.00 -31.91 326.44 -8.57 -40.48 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -4.19 Total: 18.13 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -3.52 Total: -21.16 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.16 Total: -39.37 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.85 Total: -23.06 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.91 -8.57 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929645947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.487 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds