Wall clock time and date at job start Mon Mar 30 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48507 * 109.46795 * 269.99769 * 3 2 1 5 5 H 1.48496 * 109.47542 * 29.99723 * 3 2 1 6 6 H 1.48501 * 109.47288 * 150.00009 * 3 2 1 7 7 C 1.37879 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99936 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99828 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.46864 * 300.00257 * 9 7 2 11 11 O 1.42892 * 109.47064 * 60.00458 * 9 7 2 12 12 C 1.53000 * 109.46794 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46931 * 179.97438 * 12 9 7 14 14 C 1.47841 * 111.00494 * 284.38385 * 13 12 9 15 15 C 1.54905 * 104.79463 * 213.63706 * 14 13 12 16 16 C 1.55134 * 101.65544 * 37.06991 * 15 14 13 17 17 C 1.47445 * 110.99713 * 163.53893 * 13 12 9 18 18 H 1.09004 * 109.88616 * 242.66687 * 17 13 12 19 19 C 1.50696 * 109.88936 * 3.68943 * 17 13 12 20 20 C 1.38261 * 119.94678 * 244.29883 * 19 17 13 21 21 C 1.38148 * 120.05589 * 179.73003 * 20 19 17 22 22 C 1.38741 * 119.94161 * 0.56549 * 21 20 19 23 23 O 1.35899 * 120.05135 * 179.68411 * 22 21 20 24 24 C 1.38732 * 119.88957 * 359.70994 * 22 21 20 25 25 C 1.38146 * 119.93976 * 359.97438 * 24 22 21 26 26 H 0.96996 * 120.00102 * 0.02562 * 1 2 3 27 27 H 0.96708 * 114.00560 * 59.99573 * 11 9 7 28 28 H 1.09006 * 109.46799 * 60.00306 * 12 9 7 29 29 H 1.08995 * 109.47369 * 300.00520 * 12 9 7 30 30 H 1.08999 * 110.36997 * 332.46388 * 14 13 12 31 31 H 1.08995 * 110.37374 * 94.80361 * 14 13 12 32 32 H 1.09008 * 110.98938 * 155.16167 * 15 14 13 33 33 H 1.09001 * 110.99182 * 278.97182 * 15 14 13 34 34 H 1.09001 * 110.70663 * 205.96724 * 16 15 14 35 35 H 1.09003 * 110.85950 * 82.79947 * 16 15 14 36 36 H 1.07997 * 119.97641 * 359.97438 * 20 19 17 37 37 H 1.07999 * 120.03112 * 180.25181 * 21 20 19 38 38 H 0.96700 * 113.99938 * 270.02319 * 23 22 21 39 39 H 1.07990 * 120.02910 * 180.02562 * 24 22 21 40 40 H 1.08000 * 119.96892 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8745 -0.6807 -0.8905 11 8 3.9883 -0.5197 1.1661 12 6 4.0216 -2.6365 0.0001 13 7 5.4906 -2.6364 -0.0011 14 6 6.0194 -2.2941 -1.3386 15 6 7.3252 -3.1170 -1.4702 16 6 6.9369 -4.4375 -0.7546 17 6 6.0193 -3.9564 0.3890 18 1 6.5923 -3.8682 1.3121 19 6 4.8829 -4.9272 0.5821 20 6 4.6383 -5.4635 1.8327 21 6 3.5937 -6.3494 2.0134 22 6 2.7971 -6.7097 0.9361 23 8 1.7729 -7.5859 1.1100 24 6 3.0482 -6.1745 -0.3189 25 6 4.0899 -5.2840 -0.4929 26 1 -0.4850 0.8400 -0.0004 27 1 3.7033 -0.9226 1.9977 28 1 3.6579 -3.1505 -0.8897 29 1 3.6586 -3.1501 0.8902 30 1 5.3090 -2.5833 -2.1129 31 1 6.2353 -1.2274 -1.3996 32 1 7.5692 -3.2974 -2.5172 33 1 8.1511 -2.6235 -0.9579 34 1 7.8214 -4.9343 -0.3559 35 1 6.3958 -5.1003 -1.4299 36 1 5.2619 -5.1868 2.6699 37 1 3.4005 -6.7650 2.9913 38 1 2.0215 -8.5117 0.9827 39 1 2.4293 -6.4530 -1.1589 40 1 4.2856 -4.8668 -1.4697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929894897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:57 Heat of formation + Delta-G solvation = -51.219833 kcal Electronic energy + Delta-G solvation = -22293.962302 eV Core-core repulsion = 19074.122901 eV Total energy + Delta-G solvation = -3219.839400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43600 -38.63650 -36.34063 -35.74653 -32.15210 -31.73845 -31.02778 -30.83619 -27.98319 -27.09292 -24.60551 -22.88089 -22.36020 -21.39574 -20.31211 -19.50477 -18.36900 -17.27072 -16.28762 -15.83677 -15.32827 -15.13933 -14.74588 -14.49219 -14.36285 -14.22364 -13.57897 -13.36808 -13.10525 -12.88909 -12.68356 -12.26535 -12.00003 -11.78482 -11.72540 -11.32059 -11.03175 -10.90739 -10.84255 -10.78498 -10.52239 -10.33416 -10.26326 -9.81776 -8.99022 -8.86883 -8.55298 -8.36206 -8.13244 -7.71138 -6.05963 -4.16557 1.28713 1.45577 3.43732 3.53112 3.65892 3.82079 4.23682 4.46241 4.60413 4.67887 4.76359 4.88690 5.01595 5.05416 5.23253 5.29609 5.43182 5.52159 5.57949 5.69156 5.83406 5.88456 5.93854 5.96595 5.98420 6.02870 6.12104 6.26539 6.29197 6.34827 6.45045 6.50688 6.69813 6.74183 6.87679 7.28017 7.43546 7.56571 7.68286 7.76716 8.37492 8.91948 9.19558 9.59501 11.04854 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.006789 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.705902 B = 4123.209595 C = 5438.768875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.215 1.215 7 C -0.563 4.563 8 H 0.070 0.930 9 C 0.203 3.797 10 H 0.048 0.952 11 O -0.570 6.570 12 C 0.034 3.966 13 N -0.508 5.508 14 C 0.040 3.960 15 C -0.129 4.129 16 C -0.135 4.135 17 C 0.108 3.892 18 H 0.088 0.912 19 C -0.094 4.094 20 C -0.096 4.096 21 C -0.145 4.145 22 C 0.099 3.901 23 O -0.498 6.498 24 C -0.141 4.141 25 C -0.089 4.089 26 H 0.264 0.736 27 H 0.352 0.648 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.384 0.616 39 H 0.126 0.874 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.336 -14.106 -0.258 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.137 1.137 7 C -0.601 4.601 8 H 0.088 0.912 9 C 0.145 3.855 10 H 0.066 0.934 11 O -0.375 6.375 12 C -0.094 4.094 13 N -0.231 5.231 14 C -0.088 4.088 15 C -0.167 4.167 16 C -0.173 4.173 17 C 0.000 4.000 18 H 0.106 0.894 19 C -0.095 4.095 20 C -0.115 4.115 21 C -0.163 4.163 22 C 0.055 3.945 23 O -0.308 6.308 24 C -0.159 4.159 25 C -0.108 4.108 26 H 0.073 0.927 27 H 0.198 0.802 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.239 0.761 39 H 0.144 0.856 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.298 -12.715 -0.228 18.400 hybrid contribution -0.386 -0.581 -0.406 0.807 sum 12.913 -13.296 -0.633 18.545 Atomic orbital electron populations 1.69969 1.06785 1.27326 1.49137 1.24982 0.94579 0.99927 0.92606 0.87044 0.83222 0.81813 0.78258 1.21597 1.22356 1.13708 1.21531 0.90006 0.94715 1.53798 0.91210 1.19683 0.92852 0.87112 0.85825 0.93386 1.86648 1.77935 1.56917 1.16023 1.23288 0.84710 1.00825 1.00533 1.63961 1.09878 1.23719 1.25527 1.23117 0.94799 1.00662 0.90188 1.22714 0.98248 0.95525 1.00211 1.22912 0.99390 0.97698 0.97292 1.21526 0.92444 0.86945 0.99035 0.89392 1.20204 0.98273 0.97433 0.93609 1.20885 0.97363 0.96585 0.96637 1.21344 0.95511 1.00635 0.98821 1.18445 0.88825 0.94722 0.92505 1.84878 1.33712 1.19167 1.93028 1.21349 0.98214 0.99464 0.96919 1.20869 0.94812 0.96222 0.98863 0.92700 0.80201 0.94225 0.90932 0.93781 0.90159 0.91191 0.90763 0.91036 0.91263 0.85628 0.85654 0.76074 0.85590 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 3 Si 0.87 22.46 26.99 -169.99 -4.59 17.87 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.21 -5.45 5.30 56.52 0.30 -5.15 16 7 C -0.56 -16.08 9.34 -34.44 -0.32 -16.40 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.20 4.89 2.38 -27.88 -0.07 4.82 16 10 H 0.05 1.20 7.15 -51.93 -0.37 0.83 16 11 O -0.57 -13.56 10.01 -35.23 -0.35 -13.92 16 12 C 0.03 0.68 3.03 -3.83 -0.01 0.67 16 13 N -0.51 -8.61 4.98 -224.73 -1.12 -9.73 16 14 C 0.04 0.61 6.10 -2.30 -0.01 0.60 16 15 C -0.13 -1.49 7.08 -24.60 -0.17 -1.66 16 16 C -0.13 -1.52 6.34 -24.91 -0.16 -1.68 16 17 C 0.11 1.50 3.63 -67.88 -0.25 1.25 16 18 H 0.09 1.17 7.91 -51.93 -0.41 0.76 16 19 C -0.09 -1.33 2.97 -104.60 -0.31 -1.64 16 20 C -0.10 -1.28 9.55 -39.61 -0.38 -1.66 16 21 C -0.14 -1.92 9.99 -39.43 -0.39 -2.31 16 22 C 0.10 1.40 6.71 -39.21 -0.26 1.13 16 23 O -0.50 -6.34 13.50 -19.42 -0.26 -6.60 16 24 C -0.14 -2.02 9.99 -39.43 -0.39 -2.42 16 25 C -0.09 -1.29 6.32 -39.60 -0.25 -1.54 16 26 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 27 H 0.35 7.66 9.04 45.56 0.41 8.07 16 28 H 0.04 0.81 5.37 -51.93 -0.28 0.53 16 29 H 0.07 1.53 6.42 -51.93 -0.33 1.20 16 30 H 0.04 0.68 7.51 -51.93 -0.39 0.29 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.77 6.62 -51.93 -0.34 0.43 16 36 H 0.13 1.43 7.96 -52.49 -0.42 1.01 16 37 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.38 2.69 9.06 45.56 0.41 3.11 16 39 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.12 1.73 6.76 -52.49 -0.35 1.37 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -33.86 316.64 -8.13 -41.98 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.27 Total: 11.36 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.08 Total: -18.48 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.35 Total: -36.99 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.61 Total: -20.52 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.59 Total: 17.87 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.86 -8.13 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929894897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.239 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds