Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48507 * 109.46795 * 269.99769 * 3 2 1 5 5 H 1.48496 * 109.47542 * 29.99723 * 3 2 1 6 6 H 1.48501 * 109.47288 * 150.00009 * 3 2 1 7 7 C 1.37879 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99936 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99828 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.46864 * 300.00257 * 9 7 2 11 11 O 1.42892 * 109.47064 * 60.00458 * 9 7 2 12 12 C 1.53000 * 109.46794 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46931 * 179.97438 * 12 9 7 14 14 C 1.47841 * 111.00494 * 284.38385 * 13 12 9 15 15 C 1.54905 * 104.79463 * 213.63706 * 14 13 12 16 16 C 1.55134 * 101.65544 * 37.06991 * 15 14 13 17 17 C 1.47445 * 110.99713 * 163.53893 * 13 12 9 18 18 H 1.09004 * 109.88616 * 242.66687 * 17 13 12 19 19 C 1.50696 * 109.88936 * 3.68943 * 17 13 12 20 20 C 1.38261 * 119.94678 * 244.29883 * 19 17 13 21 21 C 1.38148 * 120.05589 * 179.73003 * 20 19 17 22 22 C 1.38741 * 119.94161 * 0.56549 * 21 20 19 23 23 O 1.35899 * 120.05135 * 179.68411 * 22 21 20 24 24 C 1.38732 * 119.88957 * 359.70994 * 22 21 20 25 25 C 1.38146 * 119.93976 * 359.97438 * 24 22 21 26 26 H 0.96996 * 120.00102 * 0.02562 * 1 2 3 27 27 H 0.96708 * 114.00560 * 59.99573 * 11 9 7 28 28 H 1.09006 * 109.46799 * 60.00306 * 12 9 7 29 29 H 1.08995 * 109.47369 * 300.00520 * 12 9 7 30 30 H 1.08999 * 110.36997 * 332.46388 * 14 13 12 31 31 H 1.08995 * 110.37374 * 94.80361 * 14 13 12 32 32 H 1.09008 * 110.98938 * 155.16167 * 15 14 13 33 33 H 1.09001 * 110.99182 * 278.97182 * 15 14 13 34 34 H 1.09001 * 110.70663 * 205.96724 * 16 15 14 35 35 H 1.09003 * 110.85950 * 82.79947 * 16 15 14 36 36 H 1.07997 * 119.97641 * 359.97438 * 20 19 17 37 37 H 1.07999 * 120.03112 * 180.25181 * 21 20 19 38 38 H 0.96700 * 113.99938 * 270.02319 * 23 22 21 39 39 H 1.07990 * 120.02910 * 180.02562 * 24 22 21 40 40 H 1.08000 * 119.96892 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8745 -0.6807 -0.8905 11 8 3.9883 -0.5197 1.1661 12 6 4.0216 -2.6365 0.0001 13 7 5.4906 -2.6364 -0.0011 14 6 6.0194 -2.2941 -1.3386 15 6 7.3252 -3.1170 -1.4702 16 6 6.9369 -4.4375 -0.7546 17 6 6.0193 -3.9564 0.3890 18 1 6.5923 -3.8682 1.3121 19 6 4.8829 -4.9272 0.5821 20 6 4.6383 -5.4635 1.8327 21 6 3.5937 -6.3494 2.0134 22 6 2.7971 -6.7097 0.9361 23 8 1.7729 -7.5859 1.1100 24 6 3.0482 -6.1745 -0.3189 25 6 4.0899 -5.2840 -0.4929 26 1 -0.4850 0.8400 -0.0004 27 1 3.7033 -0.9226 1.9977 28 1 3.6579 -3.1505 -0.8897 29 1 3.6586 -3.1501 0.8902 30 1 5.3090 -2.5833 -2.1129 31 1 6.2353 -1.2274 -1.3996 32 1 7.5692 -3.2974 -2.5172 33 1 8.1511 -2.6235 -0.9579 34 1 7.8214 -4.9343 -0.3559 35 1 6.3958 -5.1003 -1.4299 36 1 5.2619 -5.1868 2.6699 37 1 3.4005 -6.7650 2.9913 38 1 2.0215 -8.5117 0.9827 39 1 2.4293 -6.4530 -1.1589 40 1 4.2856 -4.8668 -1.4697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929894897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = -78.239390 kcal Electronic energy + Delta-G solvation = -22295.133958 eV Core-core repulsion = 19074.122901 eV Total energy + Delta-G solvation = -3221.011056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56098 -39.74814 -37.79912 -37.18117 -34.41298 -33.07782 -32.10023 -31.91845 -29.81366 -28.16652 -26.37054 -24.03205 -23.44339 -22.84921 -21.61158 -20.81960 -19.41236 -19.29203 -17.46950 -17.09598 -16.76229 -16.44546 -16.28979 -16.03277 -15.89989 -15.57763 -14.86480 -14.73891 -14.49881 -14.36745 -14.03000 -13.60172 -13.48874 -13.10562 -12.90296 -12.80256 -12.77740 -12.41373 -12.08701 -12.01833 -11.88695 -11.72161 -11.55383 -11.34313 -11.06792 -10.81290 -10.13467 -9.93895 -9.43960 -9.04459 -8.36072 -6.50618 0.23397 0.38878 1.37997 1.43257 1.75087 2.43551 2.61119 3.02008 3.18889 3.27999 3.63645 3.77118 3.84826 3.96250 4.03203 4.12512 4.27100 4.35272 4.38815 4.49638 4.57872 4.62682 4.67072 4.89511 4.93896 4.98522 5.01677 5.06693 5.08510 5.18116 5.28954 5.38486 5.44639 5.45049 5.49958 5.65054 5.88332 6.08035 6.17064 6.20430 6.62115 6.86136 7.21643 7.36937 8.78560 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.006789 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.705902 B = 4123.209595 C = 5438.768875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.205 1.205 7 C -0.564 4.564 8 H 0.029 0.971 9 C 0.210 3.790 10 H 0.043 0.957 11 O -0.571 6.571 12 C 0.058 3.942 13 N -0.518 5.518 14 C 0.032 3.968 15 C -0.117 4.117 16 C -0.127 4.127 17 C 0.107 3.893 18 H 0.099 0.901 19 C -0.104 4.104 20 C -0.098 4.098 21 C -0.151 4.151 22 C 0.093 3.907 23 O -0.512 6.512 24 C -0.160 4.160 25 C -0.099 4.099 26 H 0.267 0.733 27 H 0.363 0.637 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.408 0.592 39 H 0.129 0.871 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.891 -14.369 0.195 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.127 1.127 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.152 3.848 10 H 0.061 0.939 11 O -0.377 6.377 12 C -0.070 4.070 13 N -0.241 5.241 14 C -0.096 4.096 15 C -0.154 4.154 16 C -0.165 4.165 17 C 0.000 4.000 18 H 0.117 0.883 19 C -0.105 4.105 20 C -0.116 4.116 21 C -0.169 4.169 22 C 0.048 3.952 23 O -0.325 6.325 24 C -0.179 4.179 25 C -0.117 4.117 26 H 0.075 0.925 27 H 0.209 0.791 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.267 0.733 39 H 0.147 0.853 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.875 -13.018 0.225 20.531 hybrid contribution -1.243 -0.617 -0.523 1.483 sum 14.632 -13.636 -0.299 20.003 Atomic orbital electron populations 1.70096 1.08535 1.28362 1.51051 1.25870 0.95261 1.03658 0.92373 0.85968 0.81981 0.77262 0.78390 1.21117 1.22294 1.12684 1.21829 0.92565 0.93023 1.52797 0.95260 1.19481 0.89895 0.89689 0.85752 0.93931 1.86577 1.77586 1.57213 1.16343 1.22797 0.87171 0.97498 0.99564 1.63841 1.07332 1.26192 1.26739 1.23192 0.96586 1.00761 0.89069 1.22678 0.96295 0.94730 1.01744 1.22894 0.99690 0.97652 0.96295 1.21624 0.92647 0.85311 1.00428 0.88321 1.20307 0.98506 0.97870 0.93848 1.21174 0.97466 0.96076 0.96928 1.21608 0.95314 1.00566 0.99444 1.18607 0.88947 0.95000 0.92602 1.84807 1.33781 1.20875 1.92997 1.21523 0.98684 1.00087 0.97582 1.20926 0.95221 0.96516 0.99067 0.92477 0.79079 0.95159 0.92164 0.94674 0.91241 0.89156 0.89803 0.88516 0.91255 0.83545 0.83771 0.73281 0.85291 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.28 13.96 21.45 0.30 -59.98 16 2 C 0.03 1.66 5.47 84.66 0.46 2.12 16 3 Si 0.94 46.71 26.99 68.60 1.85 48.56 16 4 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.21 -9.79 5.30 99.48 0.53 -9.26 16 7 C -0.56 -32.95 9.34 25.60 0.24 -32.72 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 9 C 0.21 10.08 2.38 29.85 0.07 10.15 16 10 H 0.04 2.11 7.15 -2.39 -0.02 2.09 16 11 O -0.57 -26.36 10.01 -148.98 -1.49 -27.85 16 12 C 0.06 2.32 3.03 86.30 0.26 2.58 16 13 N -0.52 -16.83 4.98 -864.92 -4.31 -21.14 16 14 C 0.03 0.91 6.10 86.77 0.53 1.44 16 15 C -0.12 -2.34 7.08 31.98 0.23 -2.11 16 16 C -0.13 -2.49 6.34 31.77 0.20 -2.29 16 17 C 0.11 2.73 3.63 44.51 0.16 2.89 16 18 H 0.10 2.32 7.91 -2.38 -0.02 2.30 16 19 C -0.10 -2.82 2.97 -19.85 -0.06 -2.88 16 20 C -0.10 -2.44 9.55 22.25 0.21 -2.23 16 21 C -0.15 -3.81 9.99 22.37 0.22 -3.58 16 22 C 0.09 2.56 6.71 22.51 0.15 2.71 16 23 O -0.51 -12.62 13.50 -92.41 -1.25 -13.87 16 24 C -0.16 -4.64 9.99 22.37 0.22 -4.42 16 25 C -0.10 -2.85 6.32 22.25 0.14 -2.71 16 26 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 27 H 0.36 15.30 9.04 -74.05 -0.67 14.63 16 28 H 0.03 1.27 5.37 -2.38 -0.01 1.25 16 29 H 0.06 2.55 6.42 -2.39 -0.02 2.53 16 30 H 0.03 1.07 7.51 -2.39 -0.02 1.05 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.38 6.62 -2.39 -0.02 1.36 16 36 H 0.15 2.95 7.96 -2.91 -0.02 2.93 16 37 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 38 H 0.41 5.24 9.06 -74.06 -0.67 4.57 16 39 H 0.13 3.49 8.06 -2.92 -0.02 3.46 16 40 H 0.12 3.40 6.76 -2.91 -0.02 3.38 16 Total: -1.00 -73.11 316.64 -2.31 -75.43 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.46 Total: 29.89 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 3.05 Total: -31.04 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -4.01 Total: -81.12 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -2.74 Total: -41.72 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.85 Total: 48.56 kcal Total: -73.11 -2.31 -75.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929894897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.814 kcal (2) G-P(sol) polarization free energy of solvation -73.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds