Wall clock time and date at job start Mon Mar 30 2020 01:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47070 * 239.99947 * 3 2 1 5 5 H 1.48497 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46787 * 119.99782 * 3 2 1 7 7 C 1.37874 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99879 * 359.72954 * 7 2 1 10 10 H 1.08994 * 109.47396 * 299.99625 * 9 7 2 11 11 O 1.42907 * 109.47269 * 59.99691 * 9 7 2 12 12 C 1.53007 * 109.47222 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.47013 * 179.97438 * 12 9 7 14 14 C 1.46904 * 110.99686 * 185.04648 * 13 12 9 15 15 C 1.52999 * 110.26703 * 64.92364 * 14 13 12 16 16 O 1.42895 * 109.47184 * 54.66814 * 15 14 13 17 17 C 1.54349 * 110.30366 * 302.85162 * 14 13 12 18 18 C 1.54348 * 102.39155 * 214.72754 * 17 14 13 19 19 C 1.51371 * 105.16949 * 26.34497 * 18 17 14 20 20 C 1.38501 * 130.39263 * 162.80955 * 19 18 17 21 21 C 1.38100 * 120.21497 * 180.02562 * 20 19 18 22 22 C 1.38260 * 119.93534 * 0.02562 * 21 20 19 23 23 C 1.38096 * 119.93587 * 359.97438 * 22 21 20 24 24 C 1.38223 * 109.75893 * 342.81316 * 19 18 17 25 25 H 0.96991 * 120.00198 * 359.97438 * 1 2 3 26 26 H 0.96696 * 113.99941 * 60.00417 * 11 9 7 27 27 H 1.09003 * 109.46837 * 300.00264 * 12 9 7 28 28 H 1.09001 * 109.46980 * 59.99463 * 12 9 7 29 29 H 1.00898 * 111.00460 * 61.09624 * 13 12 9 30 30 H 1.09006 * 109.47366 * 174.66695 * 15 14 13 31 31 H 1.09006 * 109.47335 * 294.66565 * 15 14 13 32 32 H 0.96706 * 114.00208 * 180.02562 * 16 15 14 33 33 H 1.09001 * 110.82058 * 332.95397 * 17 14 13 34 34 H 1.09003 * 110.82460 * 96.50043 * 17 14 13 35 35 H 1.08991 * 110.30206 * 145.26876 * 18 17 14 36 36 H 1.09001 * 110.30305 * 267.32829 * 18 17 14 37 37 H 1.08000 * 119.88885 * 0.02562 * 20 19 18 38 38 H 1.07997 * 120.03486 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.03059 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.89391 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0073 10 1 0.6283 -2.5544 0.8999 11 8 0.4248 -2.5781 -1.1559 12 6 2.2455 -3.6620 0.0058 13 7 1.5110 -4.9342 0.0130 14 6 2.4315 -6.0728 0.1325 15 6 3.1429 -6.0394 1.4866 16 8 2.1719 -5.9844 2.5336 17 6 3.4633 -6.0501 -1.0152 18 6 3.6795 -7.5523 -1.2961 19 6 2.3970 -8.2259 -0.8570 20 6 1.8969 -9.4832 -1.1525 21 6 0.6847 -9.8894 -0.6301 22 6 -0.0329 -9.0387 0.1901 23 6 0.4640 -7.7846 0.4859 24 6 1.6799 -7.3758 -0.0362 25 1 -0.4850 0.8400 0.0004 26 1 0.9134 -2.5351 -1.9892 27 1 2.8682 -3.6065 -0.8871 28 1 2.8762 -3.6019 0.8928 29 1 0.9319 -5.0221 -0.8085 30 1 3.7496 -6.9377 1.6007 31 1 3.7837 -5.1591 1.5388 32 1 2.5525 -5.9604 3.4223 33 1 3.0564 -5.5465 -1.8921 34 1 4.3917 -5.5787 -0.6924 35 1 3.8485 -7.7176 -2.3600 36 1 4.5230 -7.9278 -0.7168 37 1 2.4568 -10.1481 -1.7934 38 1 0.2977 -10.8706 -0.8620 39 1 -0.9809 -9.3549 0.5998 40 1 -0.0969 -7.1208 1.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930062043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:26 Heat of formation + Delta-G solvation = -70.980403 kcal Electronic energy + Delta-G solvation = -21973.267929 eV Core-core repulsion = 18752.571646 eV Total energy + Delta-G solvation = -3220.696283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48052 -37.44479 -35.94481 -35.27318 -33.06258 -32.05986 -30.85554 -28.89426 -28.33473 -27.04816 -24.64252 -23.49561 -22.57146 -21.04149 -20.29421 -19.15953 -17.09470 -16.85841 -16.59921 -15.60775 -15.18307 -14.95505 -14.57486 -14.46859 -14.23274 -13.94146 -13.42785 -13.22827 -13.16737 -12.63126 -12.51988 -12.39428 -12.14463 -11.68814 -11.60626 -11.11680 -11.01872 -10.95122 -10.83353 -10.79648 -10.65855 -10.35113 -10.07200 -9.65746 -8.98334 -8.66599 -8.53466 -8.48128 -8.12543 -7.63299 -5.96215 -4.14861 1.44006 1.54624 3.30149 3.35795 3.36950 3.86665 4.22085 4.40383 4.49136 4.70675 4.79587 4.99845 5.08159 5.19337 5.20574 5.30501 5.42313 5.46711 5.54452 5.62768 5.67529 5.84820 5.88555 5.95938 6.07011 6.09232 6.17720 6.29879 6.34259 6.50815 6.54794 6.66508 6.85321 6.95125 7.12615 7.62781 7.79901 7.87031 7.96735 8.08124 8.28487 8.88840 9.43907 9.62821 11.07909 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028506 B = 0.004301 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.022891 B = 6507.914149 C = 6637.068352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.235 3.765 10 H 0.063 0.937 11 O -0.564 6.564 12 C 0.037 3.963 13 N -0.658 5.658 14 C 0.155 3.845 15 C 0.100 3.900 16 O -0.546 6.546 17 C -0.147 4.147 18 C -0.079 4.079 19 C -0.102 4.102 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.070 4.070 24 C -0.073 4.073 25 H 0.260 0.740 26 H 0.339 0.661 27 H 0.017 0.983 28 H 0.064 0.936 29 H 0.343 0.657 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.368 0.632 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.661 -17.921 -0.440 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.612 4.612 8 H 0.071 0.929 9 C 0.177 3.823 10 H 0.081 0.919 11 O -0.366 6.366 12 C -0.092 4.092 13 N -0.289 5.289 14 C 0.063 3.937 15 C 0.022 3.978 16 O -0.349 6.349 17 C -0.187 4.187 18 C -0.116 4.116 19 C -0.102 4.102 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.148 4.148 23 C -0.088 4.088 24 C -0.073 4.073 25 H 0.070 0.930 26 H 0.182 0.818 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.163 0.837 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.213 0.787 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.440 -17.810 0.200 18.623 hybrid contribution 1.863 0.980 -0.790 2.249 sum 7.304 -16.830 -0.590 18.356 Atomic orbital electron populations 1.70078 1.05894 1.26436 1.46882 1.25026 0.94662 0.99006 0.93917 0.86756 0.79724 0.83367 0.78594 1.20255 1.21199 1.20196 1.21598 0.92989 0.91673 1.54904 0.92917 1.19385 0.88046 0.88613 0.86220 0.91895 1.86609 1.38461 1.96269 1.15237 1.22867 0.97440 0.89974 0.98907 1.60440 1.21738 1.00154 1.46530 1.20460 0.90887 0.89562 0.92776 1.22053 0.90042 0.98656 0.87070 1.86657 1.34513 1.97402 1.16299 1.23037 1.00379 0.95888 0.99388 1.21009 0.94775 0.94493 1.01372 1.20613 0.96856 0.94492 0.98279 1.20497 0.96505 0.95256 1.01308 1.20985 0.95102 0.99533 0.98371 1.21092 1.00071 0.94290 0.99368 1.20767 0.94673 0.95378 0.98020 1.20314 0.94861 0.95177 0.96953 0.92974 0.81829 0.96508 0.91794 0.83748 0.94346 0.93396 0.78672 0.90189 0.90420 0.90850 0.90494 0.86732 0.86345 0.86142 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.73 12.83 55.43 0.71 -25.02 16 2 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.57 -15.82 8.76 -34.44 -0.30 -16.12 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.24 6.04 3.10 -27.88 -0.09 5.95 16 10 H 0.06 1.85 8.14 -51.93 -0.42 1.43 16 11 O -0.56 -14.58 12.16 -35.23 -0.43 -15.01 16 12 C 0.04 0.76 4.72 -3.82 -0.02 0.74 16 13 N -0.66 -12.19 5.87 -100.08 -0.59 -12.78 16 14 C 0.16 2.36 0.57 -131.72 -0.07 2.29 16 15 C 0.10 1.43 5.51 37.16 0.20 1.64 16 16 O -0.55 -8.31 13.27 -35.23 -0.47 -8.78 16 17 C -0.15 -1.93 4.96 -25.32 -0.13 -2.06 16 18 C -0.08 -0.89 6.76 -26.85 -0.18 -1.08 16 19 C -0.10 -1.34 6.14 -104.20 -0.64 -1.98 16 20 C -0.12 -1.39 10.04 -39.54 -0.40 -1.78 16 21 C -0.12 -1.39 10.05 -39.62 -0.40 -1.79 16 22 C -0.13 -1.64 10.05 -39.63 -0.40 -2.04 16 23 C -0.07 -1.05 9.99 -39.54 -0.39 -1.44 16 24 C -0.07 -1.08 4.83 -104.21 -0.50 -1.59 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.34 7.76 9.04 45.56 0.41 8.17 16 27 H 0.02 0.33 7.02 -51.93 -0.36 -0.03 16 28 H 0.06 1.32 6.39 -51.93 -0.33 0.99 16 29 H 0.34 6.58 8.18 -39.29 -0.32 6.26 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.68 6.73 -51.93 -0.35 0.33 16 32 H 0.37 3.87 9.12 45.56 0.42 4.29 16 33 H 0.08 1.11 7.73 -51.93 -0.40 0.71 16 34 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 328.80 15.07 4.95 4.95 Total: -1.00 -32.33 328.80 -8.52 -40.85 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -4.27 Total: 16.64 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -3.41 Total: -17.09 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.12 Total: -37.80 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.90 Total: -23.79 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.33 -8.52 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930062043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.126 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds