Wall clock time and date at job start Mon Mar 30 2020 01:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47070 * 239.99947 * 3 2 1 5 5 H 1.48497 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46787 * 119.99782 * 3 2 1 7 7 C 1.37874 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99879 * 359.72954 * 7 2 1 10 10 H 1.08994 * 109.47396 * 299.99625 * 9 7 2 11 11 O 1.42907 * 109.47269 * 59.99691 * 9 7 2 12 12 C 1.53007 * 109.47222 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.47013 * 179.97438 * 12 9 7 14 14 C 1.46904 * 110.99686 * 185.04648 * 13 12 9 15 15 C 1.52999 * 110.26703 * 64.92364 * 14 13 12 16 16 O 1.42895 * 109.47184 * 54.66814 * 15 14 13 17 17 C 1.54349 * 110.30366 * 302.85162 * 14 13 12 18 18 C 1.54348 * 102.39155 * 214.72754 * 17 14 13 19 19 C 1.51371 * 105.16949 * 26.34497 * 18 17 14 20 20 C 1.38501 * 130.39263 * 162.80955 * 19 18 17 21 21 C 1.38100 * 120.21497 * 180.02562 * 20 19 18 22 22 C 1.38260 * 119.93534 * 0.02562 * 21 20 19 23 23 C 1.38096 * 119.93587 * 359.97438 * 22 21 20 24 24 C 1.38223 * 109.75893 * 342.81316 * 19 18 17 25 25 H 0.96991 * 120.00198 * 359.97438 * 1 2 3 26 26 H 0.96696 * 113.99941 * 60.00417 * 11 9 7 27 27 H 1.09003 * 109.46837 * 300.00264 * 12 9 7 28 28 H 1.09001 * 109.46980 * 59.99463 * 12 9 7 29 29 H 1.00898 * 111.00460 * 61.09624 * 13 12 9 30 30 H 1.09006 * 109.47366 * 174.66695 * 15 14 13 31 31 H 1.09006 * 109.47335 * 294.66565 * 15 14 13 32 32 H 0.96706 * 114.00208 * 180.02562 * 16 15 14 33 33 H 1.09001 * 110.82058 * 332.95397 * 17 14 13 34 34 H 1.09003 * 110.82460 * 96.50043 * 17 14 13 35 35 H 1.08991 * 110.30206 * 145.26876 * 18 17 14 36 36 H 1.09001 * 110.30305 * 267.32829 * 18 17 14 37 37 H 1.08000 * 119.88885 * 0.02562 * 20 19 18 38 38 H 1.07997 * 120.03486 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.03059 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.89391 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0073 10 1 0.6283 -2.5544 0.8999 11 8 0.4248 -2.5781 -1.1559 12 6 2.2455 -3.6620 0.0058 13 7 1.5110 -4.9342 0.0130 14 6 2.4315 -6.0728 0.1325 15 6 3.1429 -6.0394 1.4866 16 8 2.1719 -5.9844 2.5336 17 6 3.4633 -6.0501 -1.0152 18 6 3.6795 -7.5523 -1.2961 19 6 2.3970 -8.2259 -0.8570 20 6 1.8969 -9.4832 -1.1525 21 6 0.6847 -9.8894 -0.6301 22 6 -0.0329 -9.0387 0.1901 23 6 0.4640 -7.7846 0.4859 24 6 1.6799 -7.3758 -0.0362 25 1 -0.4850 0.8400 0.0004 26 1 0.9134 -2.5351 -1.9892 27 1 2.8682 -3.6065 -0.8871 28 1 2.8762 -3.6019 0.8928 29 1 0.9319 -5.0221 -0.8085 30 1 3.7496 -6.9377 1.6007 31 1 3.7837 -5.1591 1.5388 32 1 2.5525 -5.9604 3.4223 33 1 3.0564 -5.5465 -1.8921 34 1 4.3917 -5.5787 -0.6924 35 1 3.8485 -7.7176 -2.3600 36 1 4.5230 -7.9278 -0.7168 37 1 2.4568 -10.1481 -1.7934 38 1 0.2977 -10.8706 -0.8620 39 1 -0.9809 -9.3549 0.5998 40 1 -0.0969 -7.1208 1.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930062043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:25 Heat of formation + Delta-G solvation = -96.720534 kcal Electronic energy + Delta-G solvation = -21974.384105 eV Core-core repulsion = 18752.571646 eV Total energy + Delta-G solvation = -3221.812459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.53545 -38.71810 -37.62656 -36.49716 -34.47568 -34.17342 -31.99013 -30.11619 -29.70576 -28.49495 -26.29391 -24.78419 -23.64392 -22.48809 -21.60117 -20.38737 -18.95542 -18.21277 -17.80728 -16.73819 -16.61962 -16.39933 -16.13801 -15.95713 -15.72647 -15.14871 -14.80305 -14.70934 -14.23355 -14.14649 -13.79800 -13.51945 -13.47018 -13.13574 -12.86789 -12.78634 -12.68037 -12.53404 -12.25336 -12.09018 -11.98965 -11.82909 -11.43244 -11.03959 -10.79373 -10.69195 -10.16917 -9.65268 -9.43480 -9.09742 -8.11845 -6.38715 0.46950 0.55761 1.40574 1.42857 1.51013 2.39169 2.87548 3.12413 3.15492 3.40370 3.56773 3.74978 4.00553 4.13581 4.24809 4.27815 4.30290 4.38945 4.44774 4.50583 4.57169 4.60386 4.64796 4.72423 4.85795 4.89191 5.01622 5.11856 5.15238 5.16865 5.30880 5.59369 5.63032 5.67461 5.77768 5.81926 6.04826 6.15942 6.32353 6.55043 6.76247 7.00264 7.34451 7.56890 8.92733 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028506 B = 0.004301 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.022891 B = 6507.914149 C = 6637.068352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.586 4.586 8 H 0.061 0.939 9 C 0.236 3.764 10 H 0.013 0.987 11 O -0.578 6.578 12 C 0.062 3.938 13 N -0.670 5.670 14 C 0.149 3.851 15 C 0.099 3.901 16 O -0.571 6.571 17 C -0.145 4.145 18 C -0.071 4.071 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.136 4.136 23 C -0.095 4.095 24 C -0.096 4.096 25 H 0.261 0.739 26 H 0.352 0.648 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.336 0.664 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.386 0.614 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.136 0.864 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 -19.442 -1.449 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.625 4.625 8 H 0.079 0.921 9 C 0.179 3.821 10 H 0.031 0.969 11 O -0.382 6.382 12 C -0.067 4.067 13 N -0.300 5.300 14 C 0.057 3.943 15 C 0.021 3.979 16 O -0.377 6.377 17 C -0.185 4.185 18 C -0.108 4.108 19 C -0.108 4.108 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.154 4.154 23 C -0.114 4.114 24 C -0.096 4.096 25 H 0.069 0.931 26 H 0.196 0.804 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.655 -19.351 -0.798 20.825 hybrid contribution 1.117 1.352 -0.451 1.811 sum 8.772 -17.998 -1.249 20.061 Atomic orbital electron populations 1.70240 1.07828 1.27375 1.48395 1.25944 0.95452 1.03051 0.93362 0.85584 0.78311 0.78308 0.79178 1.18971 1.21144 1.19274 1.22003 0.93523 0.92660 1.54266 0.92067 1.19178 0.87875 0.90604 0.84483 0.96873 1.86538 1.39273 1.96417 1.15960 1.22380 0.95827 0.89278 0.99223 1.60332 1.22823 1.00566 1.46308 1.20664 0.91066 0.88347 0.94198 1.22127 0.89790 0.99530 0.86442 1.86621 1.35863 1.97486 1.17778 1.22986 0.99866 0.97686 0.97913 1.21012 0.94486 0.92515 1.02793 1.20891 0.97359 0.94883 0.97695 1.20890 0.96618 0.95040 1.00979 1.21373 0.94741 1.00442 0.97037 1.21321 1.00906 0.93579 0.99609 1.20726 0.95289 0.96350 0.99012 1.20357 0.95370 0.95489 0.98381 0.93064 0.80370 0.95329 0.92024 0.84587 0.92068 0.93674 0.76653 0.91278 0.89382 0.89058 0.88509 0.83784 0.83218 0.84601 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.49 12.83 21.45 0.28 -55.21 16 2 C 0.02 1.38 5.40 84.65 0.46 1.83 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.59 -32.74 8.76 25.60 0.22 -32.51 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.24 12.58 3.10 29.85 0.09 12.67 16 10 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 11 O -0.58 -30.93 12.16 -148.98 -1.81 -32.74 16 12 C 0.06 2.59 4.72 86.31 0.41 3.00 16 13 N -0.67 -25.61 5.87 -470.54 -2.76 -28.37 16 14 C 0.15 4.48 0.57 3.45 0.00 4.48 16 15 C 0.10 2.78 5.51 71.98 0.40 3.17 16 16 O -0.57 -17.75 13.27 -148.98 -1.98 -19.72 16 17 C -0.15 -3.57 4.96 31.51 0.16 -3.41 16 18 C -0.07 -1.38 6.76 30.52 0.21 -1.18 16 19 C -0.11 -2.58 6.14 -19.59 -0.12 -2.70 16 20 C -0.12 -2.38 10.04 22.30 0.22 -2.16 16 21 C -0.12 -2.37 10.05 22.24 0.22 -2.15 16 22 C -0.14 -3.31 10.05 22.24 0.22 -3.08 16 23 C -0.10 -2.91 9.99 22.30 0.22 -2.68 16 24 C -0.10 -2.81 4.83 -19.59 -0.09 -2.90 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.35 16.46 9.04 -74.06 -0.67 15.79 16 27 H 0.03 1.12 7.02 -2.39 -0.02 1.10 16 28 H 0.06 2.58 6.39 -2.39 -0.02 2.57 16 29 H 0.34 13.42 8.18 -89.70 -0.73 12.69 16 30 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.05 1.26 6.73 -2.38 -0.02 1.24 16 32 H 0.39 8.21 9.12 -74.05 -0.68 7.53 16 33 H 0.07 1.84 7.73 -2.39 -0.02 1.82 16 34 H 0.09 1.96 7.88 -2.39 -0.02 1.94 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 40 H 0.10 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -71.42 328.80 -2.63 -74.05 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -1.01 Total: 43.86 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 2.62 Total: -27.62 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.49 Total: -83.58 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -3.79 Total: -52.47 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.42 -2.63 -74.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930062043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.668 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds