Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99601 * 2 1 4 4 H 1.48500 * 109.47363 * 270.00083 * 3 2 1 5 5 H 1.48501 * 109.47107 * 30.00272 * 3 2 1 6 6 H 1.48502 * 109.46857 * 150.00020 * 3 2 1 7 7 C 1.37875 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99701 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00421 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.47128 * 299.99858 * 9 7 2 11 11 O 1.42899 * 109.47192 * 59.99497 * 9 7 2 12 12 C 1.52995 * 109.47432 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.47290 * 179.97438 * 12 9 7 14 14 C 1.46899 * 111.00139 * 180.02562 * 13 12 9 15 15 H 1.08994 * 108.64539 * 33.10807 * 14 13 12 16 16 C 1.52146 * 108.68696 * 151.08818 * 14 13 12 17 17 C 1.52885 * 110.78292 * 188.51693 * 16 14 13 18 18 C 1.51642 * 108.69811 * 276.73404 * 17 16 14 19 19 C 1.38044 * 119.97493 * 247.66142 * 18 17 16 20 20 C 1.38377 * 119.64239 * 181.97838 * 19 18 17 21 21 C 1.38295 * 120.08069 * 359.97438 * 20 19 18 22 22 C 1.38168 * 120.22010 * 359.86684 * 21 20 19 23 23 C 1.37937 * 119.49806 * 68.84974 * 18 17 16 24 24 O 1.36166 * 120.30825 * 357.12468 * 23 18 17 25 25 C 1.43134 * 115.61282 * 289.82359 * 24 23 18 26 26 H 0.96994 * 120.00109 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99657 * 59.99925 * 11 9 7 28 28 H 1.09005 * 109.46900 * 59.99892 * 12 9 7 29 29 H 1.08997 * 109.47370 * 299.99891 * 12 9 7 30 30 H 1.00900 * 111.00715 * 303.95952 * 13 12 9 31 31 H 1.09000 * 109.21682 * 308.85440 * 16 14 13 32 32 H 1.09006 * 109.21551 * 68.18282 * 16 14 13 33 33 H 1.09008 * 109.59926 * 156.96991 * 17 16 14 34 34 H 1.08996 * 109.59929 * 36.49784 * 17 16 14 35 35 H 1.08003 * 120.17758 * 2.00639 * 19 18 17 36 36 H 1.07999 * 119.96496 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.88598 * 179.58165 * 21 20 19 38 38 H 1.08001 * 120.16254 * 179.77725 * 22 21 20 39 39 H 1.08997 * 109.18452 * 207.18353 * 25 24 23 40 40 H 1.09011 * 109.17710 * 326.41647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8746 -0.6799 -0.8912 11 8 3.9884 -0.5205 1.1655 12 6 4.0217 -2.6364 -0.0010 13 7 5.4906 -2.6363 -0.0022 14 6 6.0172 -4.0077 -0.0027 15 1 5.3340 -4.6430 -0.5663 16 6 7.3691 -4.0106 -0.7006 17 6 7.8655 -5.4405 -0.9159 18 6 8.5381 -5.9183 0.3564 19 6 9.8997 -6.1449 0.3734 20 6 10.5001 -6.6201 1.5261 21 6 9.7383 -6.8654 2.6539 22 6 8.3760 -6.6351 2.6366 23 6 7.7759 -6.1466 1.4832 24 8 6.4389 -5.8893 1.4720 25 6 6.0754 -4.5056 1.4262 26 1 -0.4850 0.8400 0.0004 27 1 3.7033 -0.9242 1.9968 28 1 3.6580 -3.1504 -0.8908 29 1 3.6588 -3.1501 0.8892 30 1 5.8517 -2.1104 -0.7839 31 1 7.2753 -3.5141 -1.6664 32 1 8.0901 -3.4689 -0.0882 33 1 8.5817 -5.4591 -1.7374 34 1 7.0213 -6.0893 -1.1490 35 1 10.4933 -5.9520 -0.5080 36 1 11.5649 -6.7996 1.5451 37 1 10.2090 -7.2427 3.5497 38 1 7.7814 -6.8304 3.5167 39 1 5.0978 -4.3765 1.8906 40 1 6.8130 -3.9232 1.9786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930348793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -84.420594 kcal Electronic energy + Delta-G solvation = -21423.479189 eV Core-core repulsion = 18202.200096 eV Total energy + Delta-G solvation = -3221.279093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53898 -39.06404 -38.16619 -36.95534 -34.63820 -34.39269 -31.84969 -31.26479 -29.75674 -28.14592 -26.59393 -24.82197 -23.57821 -22.43883 -21.81553 -21.46474 -19.34460 -18.92902 -17.63616 -16.92626 -16.67508 -16.55155 -16.44489 -15.93101 -15.71811 -15.51226 -15.11550 -14.88450 -14.62201 -14.35650 -14.24835 -13.72848 -13.55972 -13.24492 -13.06760 -12.90916 -12.79427 -12.70479 -12.37989 -12.02068 -11.78219 -11.62912 -11.57198 -11.15110 -11.03784 -10.80507 -10.09537 -9.76741 -9.47966 -9.33506 -8.35513 -6.50889 0.27148 0.40551 1.41058 1.46945 1.77623 2.42908 2.44845 2.88265 3.03092 3.32107 3.64041 3.71440 3.92270 3.97054 4.10363 4.17714 4.23783 4.32435 4.38297 4.44537 4.49882 4.54191 4.61387 4.64050 4.66963 4.84579 4.96436 4.97769 5.03623 5.12536 5.22239 5.43763 5.45307 5.48928 5.56560 5.61173 5.83390 6.03307 6.08447 6.44107 6.54038 6.63181 7.21952 7.36999 8.78855 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039136 B = 0.003475 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.282170 B = 8055.153924 C = 8174.225669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.026 3.974 3 Si 0.943 3.057 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.034 0.966 9 C 0.207 3.793 10 H 0.053 0.947 11 O -0.572 6.572 12 C 0.058 3.942 13 N -0.674 5.674 14 C 0.063 3.937 15 H 0.035 0.965 16 C -0.112 4.112 17 C -0.073 4.073 18 C -0.125 4.125 19 C -0.106 4.106 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.148 4.148 23 C 0.069 3.931 24 O -0.345 6.345 25 C 0.085 3.915 26 H 0.267 0.733 27 H 0.365 0.635 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.348 0.652 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.973 -12.602 1.453 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.173 4.173 3 Si 0.767 3.233 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.125 1.125 7 C -0.606 4.606 8 H 0.052 0.948 9 C 0.149 3.851 10 H 0.070 0.930 11 O -0.378 6.378 12 C -0.072 4.072 13 N -0.308 5.308 14 C -0.047 4.047 15 H 0.054 0.946 16 C -0.150 4.150 17 C -0.111 4.111 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.146 4.146 21 C -0.129 4.129 22 C -0.166 4.166 23 C 0.026 3.974 24 O -0.261 6.261 25 C 0.009 3.991 26 H 0.076 0.924 27 H 0.212 0.788 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.167 0.833 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.148 0.852 39 H 0.106 0.894 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.003 -12.198 1.699 26.978 hybrid contribution -1.301 0.127 -0.567 1.425 sum 22.702 -12.071 1.132 25.736 Atomic orbital electron populations 1.70090 1.08620 1.28463 1.50931 1.25903 0.95280 1.03816 0.92321 0.85929 0.81952 0.77060 0.78376 1.21080 1.22606 1.12482 1.21851 0.92545 0.93249 1.52977 0.94797 1.19502 0.90230 0.89225 0.86170 0.92954 1.86587 1.77526 1.57247 1.16452 1.22396 0.86931 0.98173 0.99672 1.60314 1.07154 1.12626 1.50686 1.21614 0.96863 0.89896 0.96363 0.94647 1.21516 0.95144 0.97147 1.01152 1.20718 1.00411 0.95288 0.94633 1.20460 0.95052 1.01567 0.95506 1.21305 0.92807 0.98477 0.99752 1.21586 1.01429 0.98932 0.92612 1.21364 0.92457 0.99261 0.99856 1.21508 0.95972 1.02216 0.96928 1.18893 0.83456 1.01078 0.93971 1.86270 1.20275 1.25994 1.93549 1.22366 1.01097 0.79263 0.96326 0.92439 0.78762 0.95867 0.92006 0.83250 0.89717 0.91105 0.88080 0.91576 0.83255 0.82937 0.83209 0.85163 0.89377 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.94 45.01 26.99 68.60 1.85 46.87 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.20 -9.22 5.31 99.48 0.53 -8.69 16 7 C -0.57 -31.76 9.34 25.60 0.24 -31.52 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C 0.21 9.29 2.52 29.85 0.08 9.37 16 10 H 0.05 2.36 7.57 -2.38 -0.02 2.35 16 11 O -0.57 -24.73 10.01 -148.98 -1.49 -26.22 16 12 C 0.06 2.18 5.04 86.30 0.44 2.62 16 13 N -0.67 -20.76 6.15 -495.73 -3.05 -23.80 16 14 C 0.06 1.70 2.32 44.12 0.10 1.80 16 15 H 0.04 1.05 7.58 -2.39 -0.02 1.03 16 16 C -0.11 -2.37 4.96 30.27 0.15 -2.22 16 17 C -0.07 -1.41 5.55 30.11 0.17 -1.24 16 18 C -0.13 -2.65 5.07 -19.68 -0.10 -2.75 16 19 C -0.11 -1.70 9.69 22.26 0.22 -1.49 16 20 C -0.13 -1.81 10.05 22.32 0.22 -1.59 16 21 C -0.11 -1.78 10.03 22.27 0.22 -1.56 16 22 C -0.15 -3.15 10.01 22.41 0.22 -2.93 16 23 C 0.07 1.73 5.61 22.35 0.13 1.86 16 24 O -0.34 -9.99 9.99 -95.44 -0.95 -10.95 16 25 C 0.08 2.39 5.98 71.47 0.43 2.81 16 26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.37 14.37 9.04 -74.06 -0.67 13.70 16 28 H 0.02 0.90 8.03 -2.38 -0.02 0.88 16 29 H 0.06 2.40 7.24 -2.39 -0.02 2.38 16 30 H 0.35 9.98 8.09 -89.69 -0.73 9.25 16 31 H 0.08 1.57 7.87 -2.39 -0.02 1.55 16 32 H 0.07 1.54 7.90 -2.38 -0.02 1.52 16 33 H 0.10 1.42 7.93 -2.38 -0.02 1.40 16 34 H 0.07 1.45 7.88 -2.39 -0.02 1.44 16 35 H 0.15 1.61 7.98 -2.91 -0.02 1.59 16 36 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 38 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.09 2.64 7.20 -2.39 -0.02 2.62 16 40 H 0.06 1.70 7.90 -2.38 -0.02 1.68 16 Total: -1.00 -67.86 320.92 -0.89 -68.75 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.52 Total: 28.69 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 2.97 Total: -24.85 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.75 Total: -82.29 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -2.44 Total: -37.17 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.85 Total: 46.87 kcal Total: -67.86 -0.89 -68.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930348793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.671 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds