Wall clock time and date at job start Mon Mar 30 2020 01:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38290 * 119.95348 * 2 1 4 4 C 1.38180 * 120.23133 * 179.78827 * 3 2 1 5 5 C 1.38816 * 119.68052 * 359.31991 * 4 3 2 6 6 C 1.38182 * 119.82826 * 1.42987 * 5 4 3 7 7 C 1.37948 * 120.49944 * 358.72283 * 6 5 4 8 8 C 1.51673 * 119.30370 * 177.84035 * 6 5 4 9 9 N 1.46712 * 108.79006 * 68.24306 * 8 6 5 10 10 C 1.46901 * 110.99938 * 40.78129 * 9 8 6 11 11 C 1.52995 * 109.47197 * 169.99983 * 10 9 8 12 12 H 1.09000 * 109.47305 * 59.99901 * 11 10 9 13 13 O 1.42905 * 109.47205 * 300.00284 * 11 10 9 14 14 C 1.50693 * 109.47352 * 179.97438 * 11 10 9 15 15 H 1.08010 * 120.00025 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00241 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00085 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00133 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.46935 * 59.99972 * 18 16 14 20 20 H 1.48503 * 109.47120 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47348 * 300.00077 * 18 16 14 22 22 C 1.46026 * 112.58654 * 275.64954 * 9 8 6 23 23 C 1.51362 * 113.62250 * 68.80084 * 22 9 8 24 24 O 1.36068 * 120.15644 * 182.04287 * 5 4 3 25 25 H 1.08999 * 109.47408 * 89.99847 * 1 2 3 26 26 H 1.09001 * 109.47113 * 209.99942 * 1 2 3 27 27 H 1.09000 * 109.46961 * 329.99932 * 1 2 3 28 28 H 1.08002 * 119.88241 * 359.50304 * 3 2 1 29 29 H 1.07997 * 120.16166 * 179.58095 * 4 3 2 30 30 H 1.07998 * 120.17344 * 180.33657 * 7 6 5 31 31 H 1.08997 * 109.58218 * 188.03392 * 8 6 5 32 32 H 1.09002 * 109.58169 * 308.31179 * 8 6 5 33 33 H 1.09004 * 109.46988 * 290.00421 * 10 9 8 34 34 H 1.09000 * 109.47074 * 49.99742 * 10 9 8 35 35 H 0.96703 * 113.99741 * 299.99910 * 13 11 10 36 36 H 0.96997 * 120.00582 * 179.97438 * 17 16 14 37 37 H 1.09005 * 108.65433 * 189.86378 * 22 9 8 38 38 H 1.09002 * 108.65844 * 307.72665 * 22 9 8 39 39 H 1.08996 * 109.22609 * 55.19688 * 23 22 9 40 40 H 1.08994 * 109.22199 * 174.55488 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1982 0.0000 4 6 3.5793 1.2049 0.0044 5 6 4.2725 0.0023 0.0232 6 6 3.5775 -1.1919 0.0074 7 6 2.1980 -1.1991 -0.0005 8 6 4.3473 -2.4985 -0.0217 9 7 5.0406 -2.6671 1.2602 10 6 4.1854 -2.2514 2.3799 11 6 4.8352 -2.6694 3.7005 12 1 5.8111 -2.1926 3.7922 13 8 4.9947 -4.0893 3.7244 14 6 3.9582 -2.2425 4.8492 15 1 3.0298 -1.7251 4.6566 16 6 4.3408 -2.5123 6.1460 17 7 5.4709 -3.1427 6.3806 18 14 3.2534 -1.9837 7.5699 19 1 1.9240 -2.6339 7.4454 20 1 3.8841 -2.3893 8.8517 21 1 3.0870 -0.5083 7.5446 22 6 6.3257 -1.9746 1.2981 23 6 6.2020 -0.4661 1.3001 24 8 5.6323 -0.0022 0.0696 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6549 2.1319 -0.0081 29 1 4.1174 2.1412 -0.0024 30 1 1.6602 -2.1356 -0.0073 31 1 3.6554 -3.3267 -0.1746 32 1 5.0750 -2.4757 -0.8329 33 1 4.0637 -1.1683 2.3616 34 1 3.2095 -2.7282 2.2882 35 1 4.1649 -4.5797 3.6470 36 1 5.7403 -3.3322 7.2929 37 1 6.8608 -2.2816 2.1968 38 1 6.9097 -2.2754 0.4282 39 1 5.5642 -0.1594 2.1291 40 1 7.1907 -0.0251 1.4266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930456642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:12 Heat of formation + Delta-G solvation = -55.475015 kcal Electronic energy + Delta-G solvation = -22526.641725 eV Core-core repulsion = 19306.617806 eV Total energy + Delta-G solvation = -3220.023919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70118 -37.86342 -36.77293 -34.82605 -32.53427 -32.08433 -31.27396 -29.14773 -28.41186 -26.12805 -25.63109 -24.34904 -22.50916 -21.73614 -20.35200 -19.42313 -17.69048 -16.96773 -16.35261 -15.46855 -15.15914 -15.03172 -14.66360 -14.45747 -14.06707 -13.82354 -13.76098 -13.63931 -13.36975 -13.11534 -12.48400 -12.31899 -12.15945 -11.87912 -11.45475 -11.35243 -11.16294 -11.06335 -10.91793 -10.85093 -10.58010 -10.42924 -10.05812 -9.95000 -9.03590 -8.74331 -8.56941 -8.20032 -8.10449 -7.66374 -6.01395 -4.19678 1.28656 1.43357 3.27527 3.33027 3.34702 3.48022 4.10757 4.33853 4.55693 4.80604 4.87566 4.93974 5.23903 5.26114 5.30407 5.36048 5.47431 5.51015 5.55003 5.58380 5.66969 5.74597 5.84313 5.93006 6.07200 6.12487 6.13942 6.27941 6.34790 6.39755 6.56265 6.61872 6.64772 6.82364 6.86093 7.52129 7.53764 7.65659 7.77165 7.85815 8.19699 8.83927 9.45313 9.61507 11.02705 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.006253 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.264677 B = 4476.960262 C = 5267.303552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.110 4.110 4 C -0.131 4.131 5 C 0.096 3.904 6 C -0.135 4.135 7 C -0.093 4.093 8 C 0.095 3.905 9 N -0.517 5.517 10 C 0.030 3.970 11 C 0.237 3.763 12 H 0.053 0.947 13 O -0.554 6.554 14 C -0.574 4.574 15 H 0.053 0.947 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.887 3.113 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.026 3.974 23 C 0.025 3.975 24 O -0.331 6.331 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.343 0.657 36 H 0.261 0.739 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 6.106 -13.266 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.128 4.128 4 C -0.149 4.149 5 C 0.052 3.948 6 C -0.137 4.137 7 C -0.112 4.112 8 C -0.033 4.033 9 N -0.237 5.237 10 C -0.097 4.097 11 C 0.179 3.821 12 H 0.070 0.930 13 O -0.356 6.356 14 C -0.613 4.613 15 H 0.071 0.929 16 C -0.125 4.125 17 N -0.494 5.494 18 Si 0.715 3.285 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.103 4.103 23 C -0.051 4.051 24 O -0.248 6.248 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.186 0.814 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.114 5.726 -13.143 14.914 hybrid contribution -1.458 1.139 0.916 2.065 sum -5.572 6.865 -12.226 15.088 Atomic orbital electron populations 1.20754 0.91168 1.02881 1.01972 1.19937 0.96107 0.93076 1.00656 1.20838 0.93333 0.97585 1.01070 1.21163 0.94196 0.97286 1.02276 1.18521 0.83451 0.92263 1.00553 1.21172 0.94907 0.96604 1.01022 1.20813 0.92776 0.97712 0.99865 1.21466 0.96706 0.91940 0.93188 1.61883 1.03954 1.56092 1.01811 1.23123 0.96284 0.97718 0.92536 1.19317 0.95588 0.79972 0.87214 0.92977 1.86550 1.33394 1.19255 1.96412 1.21603 1.07522 1.40482 0.91676 0.92898 1.25001 0.94736 0.94010 0.98754 1.70059 1.21003 1.38065 1.20273 0.86764 0.80954 0.79082 0.81746 1.20119 1.21136 1.20228 1.22271 0.93053 0.90857 1.04087 1.23297 0.99362 0.97268 0.85217 1.86278 1.16090 1.85542 1.36929 0.91421 0.91440 0.91660 0.85926 0.85607 0.85688 0.90043 0.90298 0.95105 0.91884 0.81392 0.92921 0.88392 0.90956 0.91377 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.10 -1.27 5.89 -104.54 -0.62 -1.89 16 3 C -0.11 -1.42 9.69 -39.58 -0.38 -1.81 16 4 C -0.13 -1.89 10.01 -39.39 -0.39 -2.28 16 5 C 0.10 1.56 5.17 -39.39 -0.20 1.36 16 6 C -0.13 -2.12 3.49 -104.27 -0.36 -2.48 16 7 C -0.09 -1.32 9.33 -39.63 -0.37 -1.69 16 8 C 0.10 1.49 5.75 -4.60 -0.03 1.46 16 9 N -0.52 -9.44 4.71 -237.41 -1.12 -10.56 16 10 C 0.03 0.63 3.32 -3.83 -0.01 0.62 16 11 C 0.24 5.93 2.62 -27.89 -0.07 5.86 16 12 H 0.05 1.42 6.59 -51.93 -0.34 1.08 16 13 O -0.55 -14.35 12.60 -35.23 -0.44 -14.79 16 14 C -0.57 -15.71 8.76 -34.44 -0.30 -16.01 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 16 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 17 N -0.86 -25.23 12.84 55.43 0.71 -24.52 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.03 0.45 5.13 -5.12 -0.03 0.42 16 23 C 0.02 0.40 6.25 36.33 0.23 0.63 16 24 O -0.33 -5.50 10.04 -19.95 -0.20 -5.70 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 30 H 0.13 1.58 7.99 -52.49 -0.42 1.16 16 31 H 0.08 1.18 7.94 -51.93 -0.41 0.76 16 32 H 0.08 1.18 7.77 -51.93 -0.40 0.78 16 33 H 0.03 0.66 4.97 -51.93 -0.26 0.40 16 34 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 35 H 0.34 8.03 9.04 45.56 0.41 8.45 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.10 1.85 6.58 -51.93 -0.34 1.51 16 38 H 0.07 1.12 7.90 -51.93 -0.41 0.71 16 39 H 0.07 1.24 6.13 -51.93 -0.32 0.92 16 40 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -30.87 319.46 -8.52 -39.39 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -4.98 Total: 9.63 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.28 Total: -14.39 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.41 Total: -35.08 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.64 Total: -20.49 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.87 -8.52 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930456642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.084 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds