Wall clock time and date at job start Mon Mar 30 2020 01:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38290 * 119.95348 * 2 1 4 4 C 1.38180 * 120.23133 * 179.78827 * 3 2 1 5 5 C 1.38816 * 119.68052 * 359.31991 * 4 3 2 6 6 C 1.38182 * 119.82826 * 1.42987 * 5 4 3 7 7 C 1.37948 * 120.49944 * 358.72283 * 6 5 4 8 8 C 1.51673 * 119.30370 * 177.84035 * 6 5 4 9 9 N 1.46712 * 108.79006 * 68.24306 * 8 6 5 10 10 C 1.46901 * 110.99938 * 40.78129 * 9 8 6 11 11 C 1.52995 * 109.47197 * 169.99983 * 10 9 8 12 12 H 1.09000 * 109.47305 * 59.99901 * 11 10 9 13 13 O 1.42905 * 109.47205 * 300.00284 * 11 10 9 14 14 C 1.50693 * 109.47352 * 179.97438 * 11 10 9 15 15 H 1.08010 * 120.00025 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00241 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00085 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00133 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.46935 * 59.99972 * 18 16 14 20 20 H 1.48503 * 109.47120 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47348 * 300.00077 * 18 16 14 22 22 C 1.46026 * 112.58654 * 275.64954 * 9 8 6 23 23 C 1.51362 * 113.62250 * 68.80084 * 22 9 8 24 24 O 1.36068 * 120.15644 * 182.04287 * 5 4 3 25 25 H 1.08999 * 109.47408 * 89.99847 * 1 2 3 26 26 H 1.09001 * 109.47113 * 209.99942 * 1 2 3 27 27 H 1.09000 * 109.46961 * 329.99932 * 1 2 3 28 28 H 1.08002 * 119.88241 * 359.50304 * 3 2 1 29 29 H 1.07997 * 120.16166 * 179.58095 * 4 3 2 30 30 H 1.07998 * 120.17344 * 180.33657 * 7 6 5 31 31 H 1.08997 * 109.58218 * 188.03392 * 8 6 5 32 32 H 1.09002 * 109.58169 * 308.31179 * 8 6 5 33 33 H 1.09004 * 109.46988 * 290.00421 * 10 9 8 34 34 H 1.09000 * 109.47074 * 49.99742 * 10 9 8 35 35 H 0.96703 * 113.99741 * 299.99910 * 13 11 10 36 36 H 0.96997 * 120.00582 * 179.97438 * 17 16 14 37 37 H 1.09005 * 108.65433 * 189.86378 * 22 9 8 38 38 H 1.09002 * 108.65844 * 307.72665 * 22 9 8 39 39 H 1.08996 * 109.22609 * 55.19688 * 23 22 9 40 40 H 1.08994 * 109.22199 * 174.55488 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1982 0.0000 4 6 3.5793 1.2049 0.0044 5 6 4.2725 0.0023 0.0232 6 6 3.5775 -1.1919 0.0074 7 6 2.1980 -1.1991 -0.0005 8 6 4.3473 -2.4985 -0.0217 9 7 5.0406 -2.6671 1.2602 10 6 4.1854 -2.2514 2.3799 11 6 4.8352 -2.6694 3.7005 12 1 5.8111 -2.1926 3.7922 13 8 4.9947 -4.0893 3.7244 14 6 3.9582 -2.2425 4.8492 15 1 3.0298 -1.7251 4.6566 16 6 4.3408 -2.5123 6.1460 17 7 5.4709 -3.1427 6.3806 18 14 3.2534 -1.9837 7.5699 19 1 1.9240 -2.6339 7.4454 20 1 3.8841 -2.3893 8.8517 21 1 3.0870 -0.5083 7.5446 22 6 6.3257 -1.9746 1.2981 23 6 6.2020 -0.4661 1.3001 24 8 5.6323 -0.0022 0.0696 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6549 2.1319 -0.0081 29 1 4.1174 2.1412 -0.0024 30 1 1.6602 -2.1356 -0.0073 31 1 3.6554 -3.3267 -0.1746 32 1 5.0750 -2.4757 -0.8329 33 1 4.0637 -1.1683 2.3616 34 1 3.2095 -2.7282 2.2882 35 1 4.1649 -4.5797 3.6470 36 1 5.7403 -3.3322 7.2929 37 1 6.8608 -2.2816 2.1968 38 1 6.9097 -2.2754 0.4282 39 1 5.5642 -0.1594 2.1291 40 1 7.1907 -0.0251 1.4266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930456642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:12 Heat of formation + Delta-G solvation = -77.457828 kcal Electronic energy + Delta-G solvation = -22527.594971 eV Core-core repulsion = 19306.617806 eV Total energy + Delta-G solvation = -3220.977165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.92803 -39.08812 -38.26570 -36.60735 -34.22435 -33.63170 -32.37826 -30.77038 -29.86072 -27.37029 -27.13536 -25.80143 -23.83964 -23.26090 -21.54772 -20.93966 -19.23311 -18.66267 -17.62738 -16.93139 -16.67833 -16.47421 -16.34259 -15.89574 -15.59744 -15.22965 -15.12848 -14.94373 -14.50659 -14.39564 -14.07373 -13.55086 -13.34595 -13.17791 -12.90106 -12.85365 -12.78040 -12.62117 -12.44515 -12.35340 -12.12213 -12.03274 -11.72229 -11.16914 -11.00327 -10.69587 -10.11880 -9.86944 -9.30525 -9.12818 -8.13977 -6.39770 0.18255 0.34860 1.39180 1.40297 1.48616 2.34136 2.38212 2.92185 3.10789 3.14527 3.69676 3.78736 3.96157 3.97774 4.09204 4.13042 4.28290 4.32600 4.41667 4.46282 4.47615 4.51801 4.59324 4.74399 4.80232 4.82637 4.86472 5.00317 5.06079 5.09020 5.16152 5.32129 5.49511 5.58935 5.61025 5.73693 5.80466 5.97969 6.16532 6.23079 6.44117 6.72591 7.34186 7.61264 8.90165 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.006253 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.264677 B = 4476.960262 C = 5267.303552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.111 4.111 4 C -0.140 4.140 5 C 0.066 3.934 6 C -0.149 4.149 7 C -0.104 4.104 8 C 0.098 3.902 9 N -0.527 5.527 10 C 0.060 3.940 11 C 0.239 3.761 12 H 0.023 0.977 13 O -0.569 6.569 14 C -0.589 4.589 15 H 0.053 0.947 16 C 0.030 3.970 17 N -0.897 5.897 18 Si 0.955 3.045 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.028 3.972 23 C 0.033 3.967 24 O -0.335 6.335 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.063 0.937 35 H 0.352 0.648 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 7.028 -13.904 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.158 4.158 5 C 0.022 3.978 6 C -0.151 4.151 7 C -0.123 4.123 8 C -0.030 4.030 9 N -0.248 5.248 10 C -0.068 4.068 11 C 0.181 3.819 12 H 0.041 0.959 13 O -0.372 6.372 14 C -0.627 4.627 15 H 0.072 0.928 16 C -0.173 4.173 17 N -0.533 5.533 18 Si 0.779 3.221 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.195 1.195 22 C -0.101 4.101 23 C -0.043 4.043 24 O -0.252 6.252 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.170 0.830 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.197 0.803 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.083 6.654 -13.803 16.487 hybrid contribution -0.870 0.863 1.045 1.610 sum -6.953 7.517 -12.758 16.359 Atomic orbital electron populations 1.20818 0.88790 1.03617 1.03372 1.20359 0.97899 0.92607 0.98982 1.21222 0.92876 0.98940 0.99836 1.21429 0.95132 0.97226 1.02056 1.18830 0.83307 0.93281 1.02369 1.21192 0.95663 0.96186 1.02102 1.21074 0.92356 0.99007 0.99872 1.21489 0.97017 0.92796 0.91676 1.61789 1.04122 1.56510 1.02356 1.22588 0.95959 0.96852 0.91420 1.19164 0.94146 0.79414 0.89167 0.95949 1.86498 1.34284 1.19822 1.96634 1.21964 1.07705 1.40232 0.92778 0.92840 1.25830 0.95986 0.93937 1.01530 1.70195 1.22815 1.39490 1.20848 0.85691 0.79250 0.78892 0.78242 1.19139 1.20827 1.19515 1.22226 0.92599 0.91594 1.03639 1.23192 0.99945 0.96593 0.84585 1.86270 1.16780 1.85523 1.36659 0.89574 0.91220 0.90443 0.83045 0.84467 0.84399 0.88801 0.89644 0.96008 0.91884 0.80345 0.92932 0.90831 0.89154 0.93915 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.01 71.24 0.71 -1.11 16 2 C -0.10 -2.32 5.89 -19.81 -0.12 -2.44 16 3 C -0.11 -2.60 9.69 22.27 0.22 -2.39 16 4 C -0.14 -3.87 10.01 22.39 0.22 -3.64 16 5 C 0.07 2.10 5.17 22.39 0.12 2.21 16 6 C -0.15 -4.56 3.49 -19.64 -0.07 -4.63 16 7 C -0.10 -2.80 9.33 22.24 0.21 -2.59 16 8 C 0.10 2.98 5.75 85.90 0.49 3.48 16 9 N -0.53 -19.31 4.71 -905.02 -4.26 -23.57 16 10 C 0.06 2.49 3.32 86.30 0.29 2.77 16 11 C 0.24 12.26 2.62 29.84 0.08 12.33 16 12 H 0.02 1.29 6.59 -2.39 -0.02 1.27 16 13 O -0.57 -30.06 12.60 -148.98 -1.88 -31.94 16 14 C -0.59 -32.48 8.76 25.60 0.22 -32.26 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C 0.03 1.68 5.40 84.66 0.46 2.13 16 17 N -0.90 -53.55 12.84 21.45 0.28 -53.28 16 18 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 C 0.03 0.98 5.13 85.93 0.44 1.42 16 23 C 0.03 1.08 6.25 71.45 0.45 1.53 16 24 O -0.34 -11.02 10.04 -94.32 -0.95 -11.97 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 27 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 28 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 30 H 0.14 3.22 7.99 -2.91 -0.02 3.19 16 31 H 0.09 2.59 7.94 -2.39 -0.02 2.57 16 32 H 0.09 2.48 7.77 -2.39 -0.02 2.46 16 33 H 0.02 0.96 4.97 -2.39 -0.01 0.94 16 34 H 0.06 2.60 8.08 -2.39 -0.02 2.58 16 35 H 0.35 16.71 9.04 -74.06 -0.67 16.04 16 36 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.07 2.91 6.58 -2.38 -0.02 2.89 16 38 H 0.09 2.78 7.90 -2.39 -0.02 2.76 16 39 H 0.04 1.61 6.13 -2.39 -0.01 1.59 16 40 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -66.10 319.46 -0.69 -66.79 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.38 Total: 31.83 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 3.72 Total: -23.18 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -3.99 Total: -76.84 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -2.82 Total: -43.91 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.10 -0.69 -66.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930456642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.667 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds