Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00570 * 2 1 4 4 H 1.48503 * 109.47221 * 270.00412 * 3 2 1 5 5 H 1.48501 * 109.46972 * 30.00266 * 3 2 1 6 6 H 1.48502 * 109.47550 * 150.00109 * 3 2 1 7 7 C 1.37884 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00250 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00186 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.47025 * 300.00809 * 9 7 2 11 11 O 1.42907 * 109.46964 * 60.00169 * 9 7 2 12 12 C 1.53000 * 109.47551 * 180.02562 * 9 7 2 13 13 N 1.46900 * 109.47401 * 180.02562 * 12 9 7 14 14 C 1.47442 * 110.99757 * 69.87550 * 13 12 9 15 15 C 1.54319 * 107.23377 * 123.26012 * 14 13 12 16 16 C 1.55133 * 103.01594 * 22.27940 * 15 14 13 17 17 H 1.09004 * 110.99146 * 82.47941 * 16 15 14 18 18 O 1.42903 * 110.98995 * 206.25459 * 16 15 14 19 19 C 1.35901 * 117.00157 * 274.90651 * 18 16 15 20 20 C 1.38731 * 120.05537 * 4.99970 * 19 18 16 21 21 C 1.38145 * 119.94245 * 179.74098 * 20 19 18 22 22 C 1.38269 * 120.05389 * 0.51608 * 21 20 19 23 23 C 1.38259 * 120.11303 * 359.76101 * 22 21 20 24 24 C 1.38143 * 120.05590 * 359.97438 * 23 22 21 25 25 C 1.47837 * 111.00127 * 190.71636 * 13 12 9 26 26 H 0.97004 * 119.99729 * 359.97438 * 1 2 3 27 27 H 0.96698 * 113.99576 * 60.00495 * 11 9 7 28 28 H 1.08998 * 109.46714 * 300.00501 * 12 9 7 29 29 H 1.08999 * 109.46572 * 60.00110 * 12 9 7 30 30 H 1.09005 * 109.88544 * 242.66584 * 14 13 12 31 31 H 1.09004 * 109.89060 * 3.68466 * 14 13 12 32 32 H 1.08996 * 110.70330 * 140.66626 * 15 14 13 33 33 H 1.08999 * 110.69890 * 263.89977 * 15 14 13 34 34 H 1.08000 * 120.02884 * 0.02562 * 20 19 18 35 35 H 1.08001 * 119.97380 * 180.23451 * 21 20 19 36 36 H 1.08007 * 119.93910 * 179.74644 * 22 21 20 37 37 H 1.08003 * 119.96929 * 179.97438 * 23 22 21 38 38 H 1.07998 * 120.02933 * 179.97438 * 24 23 22 39 39 H 1.09005 * 110.37592 * 332.46661 * 25 13 12 40 40 H 1.09002 * 110.37525 * 94.80516 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8897 11 8 0.4289 -2.5746 -1.1671 12 6 2.2451 -3.6622 -0.0005 13 7 1.5105 -4.9344 -0.0012 14 6 0.8367 -5.1547 -1.2939 15 6 1.3388 -6.5050 -1.8470 16 6 1.8349 -7.2410 -0.5746 17 1 1.0058 -7.7163 -0.0503 18 8 2.8475 -8.1962 -0.8978 19 6 2.4304 -9.4269 -1.2955 20 6 1.0777 -9.6783 -1.4731 21 6 0.6567 -10.9287 -1.8827 22 6 1.5815 -11.9322 -2.1052 23 6 2.9297 -11.6859 -1.9233 24 6 3.3562 -10.4356 -1.5191 25 6 2.4199 -6.0714 0.2555 26 1 -0.4850 0.8401 0.0004 27 1 0.9208 -2.5292 -1.9984 28 1 2.8718 -3.6044 -0.8905 29 1 2.8717 -3.6045 0.8895 30 1 -0.2429 -5.1923 -1.1477 31 1 1.0891 -4.3509 -1.9855 32 1 0.5244 -7.0554 -2.3179 33 1 2.1590 -6.3529 -2.5487 34 1 0.3547 -8.8958 -1.2958 35 1 -0.3960 -11.1239 -2.0248 36 1 1.2499 -12.9103 -2.4214 37 1 3.6500 -12.4715 -2.0974 38 1 4.4095 -10.2438 -1.3768 39 1 3.4289 -5.8341 -0.0820 40 1 2.4230 -6.3230 1.3160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931061911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -51.082147 kcal Electronic energy + Delta-G solvation = -21197.921192 eV Core-core repulsion = 17978.087763 eV Total energy + Delta-G solvation = -3219.833430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44827 -38.68600 -37.12837 -35.25781 -32.14968 -31.55902 -30.89099 -30.03182 -28.32227 -27.62530 -24.55333 -23.02826 -22.55007 -21.31483 -20.63298 -20.11741 -18.43813 -16.98081 -16.32116 -16.01963 -15.80473 -14.91642 -14.66021 -14.59428 -14.38985 -14.31201 -13.70654 -13.53090 -13.34691 -13.12751 -12.80022 -12.43693 -12.19615 -11.79569 -11.68576 -11.40523 -11.26590 -10.99562 -10.93401 -10.84000 -10.66730 -10.58685 -10.31144 -10.03985 -9.18505 -8.99934 -8.58873 -8.33571 -8.08615 -7.79962 -6.01531 -4.20075 1.15590 1.28131 3.03026 3.26779 3.34114 3.36770 3.61991 4.33407 4.43999 4.66954 4.68764 4.74353 4.80302 4.91341 5.05560 5.19026 5.20002 5.25539 5.37689 5.51444 5.60497 5.77118 5.80602 5.85789 5.98383 6.04209 6.15540 6.22350 6.23908 6.24956 6.34417 6.48140 6.54314 6.63214 6.84048 7.33032 7.42838 7.49815 7.75315 7.91689 8.18757 8.83306 9.35563 9.56732 11.02557 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.054558 B = 0.003065 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.092688 B = 9132.910482 C = 9419.198607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.574 4.574 8 H 0.055 0.945 9 C 0.236 3.764 10 H 0.064 0.936 11 O -0.559 6.559 12 C 0.027 3.973 13 N -0.519 5.519 14 C 0.055 3.945 15 C -0.169 4.169 16 C 0.074 3.926 17 H 0.088 0.912 18 O -0.306 6.306 19 C 0.137 3.863 20 C -0.208 4.208 21 C -0.081 4.081 22 C -0.165 4.165 23 C -0.083 4.083 24 C -0.157 4.157 25 C 0.050 3.950 26 H 0.260 0.740 27 H 0.339 0.661 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.054 0.946 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -20.783 -4.031 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.178 3.822 10 H 0.082 0.918 11 O -0.362 6.362 12 C -0.101 4.101 13 N -0.244 5.244 14 C -0.073 4.073 15 C -0.208 4.208 16 C 0.017 3.983 17 H 0.106 0.894 18 O -0.219 6.219 19 C 0.091 3.909 20 C -0.227 4.227 21 C -0.099 4.099 22 C -0.183 4.183 23 C -0.101 4.101 24 C -0.176 4.176 25 C -0.078 4.078 26 H 0.070 0.930 27 H 0.183 0.817 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.072 0.928 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.695 -20.588 -3.133 20.998 hybrid contribution 1.383 0.992 -1.012 1.980 sum 4.078 -19.596 -4.146 20.440 Atomic orbital electron populations 1.70081 1.05904 1.26421 1.46871 1.25023 0.94690 0.99088 0.93822 0.86671 0.79981 0.83533 0.78162 1.20588 1.21088 1.19848 1.21627 0.93132 0.91537 1.54962 0.92725 1.19369 0.88038 0.88460 0.86292 0.91831 1.86655 1.38509 1.95899 1.15111 1.23228 0.97187 0.89905 0.99789 1.63676 1.27761 1.01571 1.31411 1.22844 0.99993 0.94182 0.90241 1.23460 1.01548 0.98261 0.97510 1.23682 0.90076 0.88227 0.96319 0.89441 1.86082 1.35807 1.19516 1.80512 1.19077 0.92669 0.85038 0.94117 1.21410 0.94895 0.99219 1.07147 1.20976 0.99672 0.92416 0.96806 1.21042 0.93281 0.99521 1.04466 1.20944 0.95951 0.95817 0.97406 1.20468 0.99349 0.91976 1.05795 1.22970 0.96071 0.89247 0.99536 0.92980 0.81716 0.95606 0.91278 0.90278 0.90721 0.90722 0.90745 0.85102 0.85870 0.86109 0.85568 0.85341 0.92770 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.20 12.84 55.43 0.71 -24.49 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.57 -15.59 8.76 -34.44 -0.30 -15.89 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.24 5.89 3.08 -27.88 -0.09 5.81 16 10 H 0.06 1.79 8.14 -51.92 -0.42 1.37 16 11 O -0.56 -13.78 10.34 -35.23 -0.36 -14.14 16 12 C 0.03 0.54 4.40 -3.82 -0.02 0.53 16 13 N -0.52 -9.33 5.16 -231.26 -1.19 -10.52 16 14 C 0.05 0.90 5.52 -2.84 -0.02 0.89 16 15 C -0.17 -2.30 6.27 -24.91 -0.16 -2.45 16 16 C 0.07 1.00 2.82 -24.60 -0.07 0.93 16 17 H 0.09 1.12 6.62 -51.93 -0.34 0.78 16 18 O -0.31 -4.23 9.96 -19.43 -0.19 -4.43 16 19 C 0.14 1.71 6.63 -39.22 -0.26 1.45 16 20 C -0.21 -2.35 8.74 -39.43 -0.34 -2.69 16 21 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 22 C -0.16 -1.47 10.04 -39.56 -0.40 -1.87 16 23 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 24 C -0.16 -1.72 9.99 -39.43 -0.39 -2.11 16 25 C 0.05 0.76 6.42 -2.31 -0.01 0.74 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.34 7.49 7.92 45.56 0.36 7.85 16 28 H 0.03 0.52 7.96 -51.93 -0.41 0.10 16 29 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.30 5.19 -51.93 -0.27 1.03 16 32 H 0.07 0.90 7.29 -51.93 -0.38 0.52 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.13 1.41 5.31 -52.49 -0.28 1.13 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 37 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.05 0.83 7.81 -51.93 -0.41 0.43 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -30.20 324.33 -9.19 -39.40 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.07 Total: 8.14 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -2.95 Total: -14.87 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.48 Total: -35.00 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.56 Total: -18.57 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.20 -9.19 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931061911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.686 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds