Wall clock time and date at job start Mon Mar 30 2020 01:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48501 * 109.46671 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46979 * 299.99834 * 3 2 1 6 6 H 1.48490 * 109.47415 * 60.00021 * 3 2 1 7 7 C 1.39943 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99695 * 195.50170 * 7 2 1 9 9 C 1.41397 * 119.99698 * 15.49758 * 7 2 1 10 10 C 1.40563 * 120.08241 * 25.39032 * 9 7 2 11 11 C 1.37599 * 119.54130 * 180.11917 * 10 9 7 12 12 C 1.38436 * 120.14425 * 0.07504 * 11 10 9 13 13 C 1.39147 * 120.91317 * 359.93842 * 12 11 10 14 14 C 1.37243 * 119.87255 * 359.84664 * 13 12 11 15 15 C 1.50686 * 121.81172 * 180.39678 * 14 13 12 16 16 C 1.52895 * 109.98999 * 343.08832 * 15 14 13 17 17 N 1.47177 * 108.47724 * 50.20519 * 16 15 14 18 18 C 1.46902 * 110.99649 * 52.33809 * 17 16 15 19 19 C 1.52999 * 109.46864 * 169.99954 * 18 17 16 20 20 H 1.08999 * 109.47358 * 60.00315 * 19 18 17 21 21 O 1.42905 * 109.47519 * 300.00428 * 19 18 17 22 22 C 1.53005 * 109.47467 * 180.02562 * 19 18 17 23 23 O 1.42897 * 109.47459 * 185.00183 * 22 19 18 24 24 C 1.46618 * 110.23073 * 288.93975 * 17 16 15 25 25 H 0.96999 * 119.99454 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.22581 * 0.11094 * 10 9 7 27 27 H 1.08001 * 119.92611 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.54413 * 179.97438 * 12 11 10 29 29 H 1.08998 * 109.38392 * 222.92992 * 15 14 13 30 30 H 1.08996 * 109.29239 * 103.19246 * 15 14 13 31 31 H 1.08998 * 109.63559 * 290.51116 * 16 15 14 32 32 H 1.09003 * 109.80333 * 169.99978 * 16 15 14 33 33 H 1.08994 * 109.47723 * 289.99976 * 18 17 16 34 34 H 1.09002 * 109.47072 * 50.00716 * 18 17 16 35 35 H 0.96701 * 113.99697 * 300.00221 * 21 19 18 36 36 H 1.09001 * 109.46476 * 305.00339 * 22 19 18 37 37 H 1.08994 * 109.46950 * 64.99875 * 22 19 18 38 38 H 0.96696 * 113.99981 * 179.97438 * 23 22 19 39 39 H 1.08995 * 109.26977 * 172.87543 * 24 17 16 40 40 H 1.09007 * 109.26415 * 292.33920 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0585 -1.2290 0.2494 9 6 1.3395 -2.4140 -0.3283 10 6 0.1928 -2.3836 -1.1407 11 6 -0.4505 -3.5598 -1.4506 12 6 0.0290 -4.7637 -0.9635 13 6 1.1628 -4.8082 -0.1581 14 6 1.8219 -3.6470 0.1593 15 6 3.0584 -3.6454 1.0205 16 6 3.1726 -4.9711 1.7735 17 7 3.0177 -6.0710 0.8079 18 6 3.9393 -5.9108 -0.3247 19 6 3.9308 -7.1839 -1.1732 20 1 2.9231 -7.3644 -1.5475 21 8 4.3472 -8.2924 -0.3731 22 6 4.8912 -7.0175 -2.3526 23 8 4.7969 -8.1579 -3.2083 24 6 1.6279 -6.1492 0.3473 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1808 -1.4435 -1.5188 27 1 -1.3318 -3.5437 -2.0746 28 1 -0.4837 -5.6810 -1.2125 29 1 2.9992 -2.8262 1.7371 30 1 3.9367 -3.5111 0.3891 31 1 2.3881 -5.0327 2.5278 32 1 4.1487 -5.0402 2.2538 33 1 3.6217 -5.0654 -0.9350 34 1 4.9471 -5.7304 0.0496 35 1 5.2371 -8.2001 -0.0060 36 1 4.6269 -6.1203 -2.9123 37 1 5.9114 -6.9260 -1.9801 38 1 5.3794 -8.1204 -3.9792 39 1 1.5562 -6.8813 -0.4570 40 1 0.9917 -6.4619 1.1753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931332369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:08 Heat of formation + Delta-G solvation = -81.967861 kcal Electronic energy + Delta-G solvation = -22120.320301 eV Core-core repulsion = 18899.147566 eV Total energy + Delta-G solvation = -3221.172735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.63262 -37.86018 -36.30567 -35.42225 -33.69599 -31.73234 -30.57241 -29.38701 -28.41870 -25.78959 -25.14505 -23.34177 -21.96608 -21.26896 -20.49727 -18.51387 -17.30952 -16.97214 -16.27982 -16.06184 -15.61538 -15.07270 -14.63902 -14.43200 -14.33880 -13.60670 -13.31682 -13.10299 -12.84140 -12.79905 -12.54290 -12.28114 -11.71795 -11.50824 -11.38189 -11.22093 -11.06402 -10.86547 -10.81418 -10.56663 -10.40273 -10.17833 -10.10321 -9.90960 -9.71686 -9.28713 -9.19674 -7.74084 -7.34857 -7.24361 -6.78295 -4.41329 2.72180 2.88731 3.02751 3.06998 3.16187 3.86050 3.87941 4.55775 4.58016 4.68187 4.98930 5.15395 5.31027 5.40623 5.50316 5.54349 5.57925 5.82293 5.88830 5.95032 6.05400 6.10816 6.21121 6.33535 6.34529 6.50490 6.60672 6.66613 6.88013 7.01898 7.17735 7.25849 7.44787 7.49935 7.54434 7.60653 7.85927 7.89434 8.01489 8.07461 8.23170 8.58823 8.84446 8.93519 10.14728 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.005030 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.846692 B = 5565.405484 C = 5785.226403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.112 3.888 10 C -0.165 4.165 11 C -0.106 4.106 12 C -0.234 4.234 13 C -0.094 4.094 14 C -0.184 4.184 15 C -0.087 4.087 16 C 0.053 3.947 17 N -0.516 5.516 18 C 0.022 3.978 19 C 0.113 3.887 20 H 0.105 0.895 21 O -0.542 6.542 22 C 0.044 3.956 23 O -0.564 6.564 24 C 0.095 3.905 25 H 0.279 0.721 26 H 0.118 0.882 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.366 0.634 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.375 0.625 39 H 0.072 0.928 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.386 -6.805 -1.771 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.109 3.891 10 C -0.184 4.184 11 C -0.125 4.125 12 C -0.253 4.253 13 C -0.095 4.095 14 C -0.186 4.186 15 C -0.125 4.125 16 C -0.075 4.075 17 N -0.237 5.237 18 C -0.107 4.107 19 C 0.053 3.947 20 H 0.122 0.878 21 O -0.346 6.346 22 C -0.034 4.034 23 O -0.369 6.369 24 C -0.032 4.032 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.212 0.788 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.221 0.779 39 H 0.091 0.909 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.276 -7.503 -1.199 10.521 hybrid contribution 0.884 2.280 -0.774 2.565 sum 8.160 -5.223 -1.973 9.887 Atomic orbital electron populations 1.69833 1.07541 1.28988 1.35626 1.25905 0.94718 1.01245 0.92340 0.86302 0.80914 0.81173 0.78585 1.18480 1.19763 1.19979 1.19577 0.97233 0.90847 1.41228 0.90436 1.17534 0.91377 0.91430 0.88721 1.21311 0.99079 0.96715 1.01308 1.20633 0.98504 0.93460 0.99869 1.20268 1.00588 0.96328 1.08161 1.19687 0.96617 0.94209 0.98990 1.19253 1.00554 0.92937 1.05816 1.20669 0.96153 0.97525 0.98160 1.22236 1.01259 0.89175 0.94834 1.62675 1.04628 1.43091 1.13340 1.22667 0.97411 0.96922 0.93705 1.21938 0.98474 0.86502 0.87773 0.87762 1.86634 1.36568 1.42456 1.68901 1.22935 0.99007 0.88624 0.92870 1.86553 1.67623 1.43195 1.39525 1.21021 0.88359 0.94488 0.99379 0.90985 0.86387 0.89561 0.89619 0.91111 0.93104 0.90930 0.91481 0.92079 0.91131 0.78843 0.92610 0.93513 0.77881 0.90933 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.28 10.87 55.55 0.60 -19.68 16 2 C 0.08 1.85 5.18 -17.34 -0.09 1.76 16 3 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -11.70 8.13 -37.74 -0.31 -12.01 16 8 H 0.08 1.90 6.97 -52.49 -0.37 1.53 16 9 C 0.11 2.88 5.58 -106.74 -0.60 2.28 16 10 C -0.16 -4.25 8.68 -38.94 -0.34 -4.59 16 11 C -0.11 -2.50 10.02 -39.74 -0.40 -2.90 16 12 C -0.23 -5.21 9.65 -39.17 -0.38 -5.58 16 13 C -0.09 -2.02 5.19 -104.66 -0.54 -2.57 16 14 C -0.18 -4.23 5.11 -103.91 -0.53 -4.76 16 15 C -0.09 -1.70 4.16 -27.94 -0.12 -1.82 16 16 C 0.05 0.88 6.03 -3.73 -0.02 0.86 16 17 N -0.52 -8.58 4.88 -236.17 -1.15 -9.73 16 18 C 0.02 0.33 3.59 -3.82 -0.01 0.31 16 19 C 0.11 1.60 3.16 -26.73 -0.08 1.52 16 20 H 0.10 1.71 6.39 -51.93 -0.33 1.38 16 21 O -0.54 -7.82 13.17 -40.10 -0.53 -8.35 16 22 C 0.04 0.52 6.68 37.16 0.25 0.77 16 23 O -0.56 -6.94 13.62 -40.10 -0.55 -7.48 16 24 C 0.10 1.75 5.43 -5.15 -0.03 1.72 16 25 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 26 H 0.12 3.16 6.13 -52.49 -0.32 2.84 16 27 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.07 1.45 7.34 -51.93 -0.38 1.07 16 30 H 0.05 0.96 7.06 -51.93 -0.37 0.59 16 31 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.06 5.91 -51.93 -0.31 0.76 16 34 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.37 3.87 9.04 45.56 0.41 4.28 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.38 2.70 9.12 45.56 0.42 3.11 16 39 H 0.07 1.29 6.09 -51.93 -0.32 0.97 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -29.52 317.20 -9.14 -38.66 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -4.07 Total: 13.53 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -3.20 Total: -25.00 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: -0.55 Total: -29.41 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.07 Total: -15.83 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.52 -9.14 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931332369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.304 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds