Wall clock time and date at job start Mon Mar 30 2020 01:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48501 * 109.46671 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46979 * 299.99834 * 3 2 1 6 6 H 1.48490 * 109.47415 * 60.00021 * 3 2 1 7 7 C 1.39943 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99695 * 195.50170 * 7 2 1 9 9 C 1.41397 * 119.99698 * 15.49758 * 7 2 1 10 10 C 1.40563 * 120.08241 * 25.39032 * 9 7 2 11 11 C 1.37599 * 119.54130 * 180.11917 * 10 9 7 12 12 C 1.38436 * 120.14425 * 0.07504 * 11 10 9 13 13 C 1.39147 * 120.91317 * 359.93842 * 12 11 10 14 14 C 1.37243 * 119.87255 * 359.84664 * 13 12 11 15 15 C 1.50686 * 121.81172 * 180.39678 * 14 13 12 16 16 C 1.52895 * 109.98999 * 343.08832 * 15 14 13 17 17 N 1.47177 * 108.47724 * 50.20519 * 16 15 14 18 18 C 1.46902 * 110.99649 * 52.33809 * 17 16 15 19 19 C 1.52999 * 109.46864 * 169.99954 * 18 17 16 20 20 H 1.08999 * 109.47358 * 60.00315 * 19 18 17 21 21 O 1.42905 * 109.47519 * 300.00428 * 19 18 17 22 22 C 1.53005 * 109.47467 * 180.02562 * 19 18 17 23 23 O 1.42897 * 109.47459 * 185.00183 * 22 19 18 24 24 C 1.46618 * 110.23073 * 288.93975 * 17 16 15 25 25 H 0.96999 * 119.99454 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.22581 * 0.11094 * 10 9 7 27 27 H 1.08001 * 119.92611 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.54413 * 179.97438 * 12 11 10 29 29 H 1.08998 * 109.38392 * 222.92992 * 15 14 13 30 30 H 1.08996 * 109.29239 * 103.19246 * 15 14 13 31 31 H 1.08998 * 109.63559 * 290.51116 * 16 15 14 32 32 H 1.09003 * 109.80333 * 169.99978 * 16 15 14 33 33 H 1.08994 * 109.47723 * 289.99976 * 18 17 16 34 34 H 1.09002 * 109.47072 * 50.00716 * 18 17 16 35 35 H 0.96701 * 113.99697 * 300.00221 * 21 19 18 36 36 H 1.09001 * 109.46476 * 305.00339 * 22 19 18 37 37 H 1.08994 * 109.46950 * 64.99875 * 22 19 18 38 38 H 0.96696 * 113.99981 * 179.97438 * 23 22 19 39 39 H 1.08995 * 109.26977 * 172.87543 * 24 17 16 40 40 H 1.09007 * 109.26415 * 292.33920 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0585 -1.2290 0.2494 9 6 1.3395 -2.4140 -0.3283 10 6 0.1928 -2.3836 -1.1407 11 6 -0.4505 -3.5598 -1.4506 12 6 0.0290 -4.7637 -0.9635 13 6 1.1628 -4.8082 -0.1581 14 6 1.8219 -3.6470 0.1593 15 6 3.0584 -3.6454 1.0205 16 6 3.1726 -4.9711 1.7735 17 7 3.0177 -6.0710 0.8079 18 6 3.9393 -5.9108 -0.3247 19 6 3.9308 -7.1839 -1.1732 20 1 2.9231 -7.3644 -1.5475 21 8 4.3472 -8.2924 -0.3731 22 6 4.8912 -7.0175 -2.3526 23 8 4.7969 -8.1579 -3.2083 24 6 1.6279 -6.1492 0.3473 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1808 -1.4435 -1.5188 27 1 -1.3318 -3.5437 -2.0746 28 1 -0.4837 -5.6810 -1.2125 29 1 2.9992 -2.8262 1.7371 30 1 3.9367 -3.5111 0.3891 31 1 2.3881 -5.0327 2.5278 32 1 4.1487 -5.0402 2.2538 33 1 3.6217 -5.0654 -0.9350 34 1 4.9471 -5.7304 0.0496 35 1 5.2371 -8.2001 -0.0060 36 1 4.6269 -6.1203 -2.9123 37 1 5.9114 -6.9260 -1.9801 38 1 5.3794 -8.1204 -3.9792 39 1 1.5562 -6.8813 -0.4570 40 1 0.9917 -6.4619 1.1753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931332369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:08 Heat of formation + Delta-G solvation = -105.025019 kcal Electronic energy + Delta-G solvation = -22121.320134 eV Core-core repulsion = 18899.147566 eV Total energy + Delta-G solvation = -3222.172568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12455 -39.09069 -37.70530 -36.52556 -35.50600 -33.33356 -32.00729 -30.89345 -30.01846 -27.14505 -26.86925 -24.81781 -23.37644 -22.67690 -22.18408 -20.02768 -18.85975 -18.20310 -17.45198 -17.31723 -17.15347 -16.50409 -16.11994 -16.02439 -15.72294 -15.06824 -14.89250 -14.42108 -14.28145 -14.21969 -13.91550 -13.57257 -13.33274 -13.09761 -12.98375 -12.81232 -12.63273 -12.40713 -12.30625 -12.08514 -11.90531 -11.62635 -11.55618 -11.06545 -11.02861 -10.98554 -10.81630 -9.22317 -9.16476 -9.05079 -8.60968 -6.33637 0.95421 1.05648 1.36189 1.48620 1.50721 2.18317 2.72162 2.80348 3.46355 3.64501 3.67709 3.97471 4.08973 4.18060 4.22132 4.26310 4.38933 4.42059 4.49768 4.58659 4.61974 4.66457 4.77209 4.82153 4.91650 5.03871 5.07096 5.14878 5.20086 5.25421 5.35611 5.47566 5.75626 5.94137 6.07435 6.13053 6.17595 6.26602 6.38655 6.70882 6.88339 6.95526 7.00123 7.06742 8.34039 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.005030 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.846692 B = 5565.405484 C = 5785.226403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.033 3.967 3 Si 0.979 3.021 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.486 4.486 8 H 0.079 0.921 9 C 0.079 3.921 10 C -0.197 4.197 11 C -0.115 4.115 12 C -0.238 4.238 13 C -0.095 4.095 14 C -0.192 4.192 15 C -0.081 4.081 16 C 0.059 3.941 17 N -0.509 5.509 18 C 0.027 3.973 19 C 0.118 3.882 20 H 0.077 0.923 21 O -0.557 6.557 22 C 0.049 3.951 23 O -0.586 6.586 24 C 0.101 3.899 25 H 0.285 0.715 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.383 0.617 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.396 0.604 39 H 0.080 0.920 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.428 -7.762 -1.329 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.515 4.515 8 H 0.097 0.903 9 C 0.077 3.923 10 C -0.216 4.216 11 C -0.133 4.133 12 C -0.258 4.258 13 C -0.096 4.096 14 C -0.193 4.193 15 C -0.119 4.119 16 C -0.069 4.069 17 N -0.230 5.230 18 C -0.102 4.102 19 C 0.058 3.942 20 H 0.095 0.905 21 O -0.363 6.363 22 C -0.030 4.030 23 O -0.394 6.394 24 C -0.027 4.027 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.232 0.768 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.246 0.754 39 H 0.098 0.902 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.340 -8.480 -0.767 12.639 hybrid contribution 0.230 2.449 -0.938 2.633 sum 9.571 -6.031 -1.705 11.440 Atomic orbital electron populations 1.69909 1.09081 1.30155 1.36531 1.26762 0.95420 1.04529 0.91438 0.85206 0.79589 0.76510 0.78713 1.17842 1.19327 1.19274 1.19795 0.97444 0.91735 1.42557 0.90258 1.17951 0.91962 0.92981 0.89405 1.21276 1.00500 0.96736 1.03120 1.20870 0.98964 0.93391 1.00098 1.20635 1.00853 0.96678 1.07653 1.20117 0.95952 0.95555 0.97999 1.19678 1.01600 0.92441 1.05629 1.20646 0.94755 0.98901 0.97617 1.22256 1.02931 0.87289 0.94378 1.62734 1.03806 1.42616 1.13860 1.22682 0.98126 0.96449 0.92916 1.21747 0.97984 0.85880 0.88544 0.90465 1.86594 1.38147 1.42416 1.69145 1.22844 0.99757 0.88336 0.92035 1.86488 1.68797 1.43417 1.40746 1.21002 0.89580 0.92452 0.99684 0.90458 0.88440 0.87957 0.87277 0.92545 0.92399 0.91442 0.88213 0.94636 0.88452 0.76800 0.92783 0.90681 0.75402 0.90189 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.90 10.87 21.83 0.24 -43.67 16 2 C 0.03 1.63 5.18 85.26 0.44 2.07 16 3 Si 0.98 37.93 29.59 68.60 2.03 39.96 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.49 -25.45 8.13 23.46 0.19 -25.26 16 8 H 0.08 3.96 6.97 -2.91 -0.02 3.94 16 9 C 0.08 4.21 5.58 -21.23 -0.12 4.10 16 10 C -0.20 -10.60 8.68 22.69 0.20 -10.40 16 11 C -0.11 -5.53 10.02 22.17 0.22 -5.31 16 12 C -0.24 -10.58 9.65 22.54 0.22 -10.36 16 13 C -0.09 -4.06 5.19 -19.89 -0.10 -4.16 16 14 C -0.19 -8.89 5.11 -19.40 -0.10 -8.99 16 15 C -0.08 -3.10 4.16 29.81 0.12 -2.98 16 16 C 0.06 1.84 6.03 86.22 0.52 2.36 16 17 N -0.51 -15.70 4.88 -901.09 -4.40 -20.10 16 18 C 0.03 0.74 3.59 86.30 0.31 1.05 16 19 C 0.12 3.10 3.16 30.60 0.10 3.20 16 20 H 0.08 2.44 6.39 -2.39 -0.02 2.43 16 21 O -0.56 -14.50 13.17 -144.32 -1.90 -16.40 16 22 C 0.05 1.02 6.68 71.98 0.48 1.51 16 23 O -0.59 -13.10 13.62 -144.32 -1.97 -15.07 16 24 C 0.10 3.54 5.43 85.60 0.46 4.00 16 25 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 26 H 0.10 5.54 6.13 -2.91 -0.02 5.52 16 27 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.06 2.32 7.34 -2.39 -0.02 2.30 16 30 H 0.06 2.12 7.06 -2.39 -0.02 2.11 16 31 H 0.07 2.18 8.05 -2.39 -0.02 2.16 16 32 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.04 1.19 5.91 -2.39 -0.01 1.17 16 34 H 0.10 2.17 8.08 -2.39 -0.02 2.15 16 35 H 0.38 6.74 9.04 -74.06 -0.67 6.07 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.40 4.75 9.12 -74.06 -0.68 4.07 16 39 H 0.08 2.71 6.09 -2.39 -0.01 2.70 16 40 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 Total: -1.00 -65.02 317.20 -3.33 -68.35 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.27 Total: 36.10 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 2.94 Total: -49.17 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -4.16 Total: -63.77 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -3.87 Total: -31.47 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -65.02 -3.33 -68.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931332369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.675 kcal (2) G-P(sol) polarization free energy of solvation -65.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds