Wall clock time and date at job start Mon Mar 30 2020 01:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47108 * 300.00003 * 3 2 1 6 6 H 1.48504 * 109.47048 * 59.99748 * 3 2 1 7 7 C 1.37880 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00148 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46929 * 299.99721 * 9 7 2 11 11 O 1.42900 * 109.46868 * 59.99791 * 9 7 2 12 12 C 1.53002 * 109.46857 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.46734 * 179.97438 * 12 9 7 14 14 C 1.46906 * 110.99670 * 173.31511 * 13 12 9 15 15 C 1.50701 * 112.84656 * 295.32384 * 14 13 12 16 16 C 1.38235 * 120.00395 * 332.92379 * 15 14 13 17 17 C 1.38234 * 119.99830 * 180.02562 * 16 15 14 18 18 C 1.38232 * 120.00212 * 359.97438 * 17 16 15 19 19 C 1.38231 * 119.99854 * 0.26087 * 18 17 16 20 20 C 1.38236 * 120.00264 * 359.48506 * 19 18 17 21 21 C 1.53782 * 113.69068 * 66.59165 * 14 13 12 22 22 C 1.53787 * 87.07647 * 89.12409 * 21 14 13 23 23 H 1.09008 * 113.60856 * 139.98292 * 22 21 14 24 24 O 1.42895 * 113.69452 * 270.86670 * 22 21 14 25 25 C 1.53780 * 113.61167 * 164.13092 * 14 13 12 26 26 H 0.97001 * 119.99627 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00097 * 60.00338 * 11 9 7 28 28 H 1.08997 * 109.46971 * 60.00528 * 12 9 7 29 29 H 1.08995 * 109.46919 * 299.99965 * 12 9 7 30 30 H 1.00899 * 111.00459 * 297.27044 * 13 12 9 31 31 H 1.07996 * 119.99784 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.99815 * 179.97438 * 17 16 15 33 33 H 1.07999 * 120.00091 * 179.97438 * 18 17 16 34 34 H 1.08010 * 119.99996 * 179.72030 * 19 18 17 35 35 H 1.07995 * 120.00300 * 180.23356 * 20 19 18 36 36 H 1.08994 * 113.61486 * 203.67168 * 21 14 13 37 37 H 1.08999 * 113.61143 * 334.57835 * 21 14 13 38 38 H 0.96697 * 114.00633 * 277.54151 * 24 22 21 39 39 H 1.09000 * 113.61884 * 25.34403 * 25 14 13 40 40 H 1.08998 * 113.61351 * 156.25372 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2452 -3.6622 0.0005 13 7 1.5106 -4.9343 0.0012 14 6 2.4270 -6.0714 -0.1585 15 6 3.1254 -6.0770 -1.4939 16 6 2.5271 -5.4831 -2.5894 17 6 3.1676 -5.4887 -3.8144 18 6 4.4066 -6.0879 -3.9438 19 6 5.0027 -6.6860 -2.8494 20 6 4.3647 -6.6758 -1.6231 21 6 3.3768 -6.2717 1.0343 22 6 2.2882 -7.1669 1.6496 23 1 2.6814 -8.0556 2.1435 24 8 1.3470 -6.4551 2.4554 25 6 1.7998 -7.4250 0.2144 26 1 -0.4849 0.8401 0.0004 27 1 0.9223 -2.5300 -1.9975 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 0.9563 -5.0314 0.8386 31 1 1.5589 -5.0153 -2.4884 32 1 2.7000 -5.0251 -4.6704 33 1 4.9068 -6.0927 -4.9009 34 1 5.9688 -7.1581 -2.9515 35 1 4.8321 -7.1399 -0.7673 36 1 4.2907 -6.8082 0.7794 37 1 3.5641 -5.3598 1.6012 38 1 1.6485 -6.2897 3.3591 39 1 0.7141 -7.4442 0.1195 40 1 2.2827 -8.2767 -0.2646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931684698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:32 Heat of formation + Delta-G solvation = -69.494350 kcal Electronic energy + Delta-G solvation = -22157.377605 eV Core-core repulsion = 18936.745762 eV Total energy + Delta-G solvation = -3220.631843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63005 -39.22195 -37.93216 -36.21662 -34.27132 -33.78086 -31.63711 -31.55882 -29.62395 -26.99811 -26.26028 -24.82178 -23.29390 -22.45904 -22.10488 -19.95822 -18.96484 -18.57102 -17.64297 -16.98713 -16.67022 -16.26494 -16.09417 -15.86579 -15.46660 -15.25506 -14.95913 -14.66347 -14.33141 -14.07579 -13.85082 -13.57045 -13.38091 -13.11452 -12.89142 -12.84156 -12.74273 -12.41585 -12.20282 -11.98936 -11.93235 -11.69228 -11.28505 -11.02820 -10.72977 -10.63409 -10.09253 -9.70226 -9.46576 -9.10049 -8.13774 -6.40011 0.53583 0.61986 1.37806 1.38634 1.51178 2.37349 2.95052 3.01222 3.11995 3.39124 3.62558 3.72050 3.82953 4.12242 4.15014 4.26297 4.28575 4.40574 4.46688 4.49417 4.64506 4.70865 4.75871 4.80396 4.91643 4.97437 5.05454 5.11891 5.13168 5.25119 5.30480 5.59727 5.64844 5.73341 5.76108 5.84410 6.06801 6.23089 6.31425 6.63371 6.74739 6.90884 7.33719 7.59919 8.90995 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.005869 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.234918 B = 4769.901581 C = 5843.363835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.586 4.586 8 H 0.055 0.945 9 C 0.238 3.762 10 H 0.013 0.987 11 O -0.567 6.567 12 C 0.067 3.933 13 N -0.658 5.658 14 C 0.126 3.874 15 C -0.072 4.072 16 C -0.114 4.114 17 C -0.136 4.136 18 C -0.130 4.130 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.201 4.201 22 C 0.086 3.914 23 H 0.101 0.899 24 O -0.571 6.571 25 C -0.118 4.118 26 H 0.261 0.739 27 H 0.349 0.651 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.347 0.653 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.056 0.944 38 H 0.396 0.604 39 H 0.066 0.934 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.930 -17.249 -1.087 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.624 4.624 8 H 0.073 0.927 9 C 0.180 3.820 10 H 0.031 0.969 11 O -0.370 6.370 12 C -0.062 4.062 13 N -0.290 5.290 14 C 0.034 3.966 15 C -0.073 4.073 16 C -0.133 4.133 17 C -0.154 4.154 18 C -0.148 4.148 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.240 4.240 22 C 0.027 3.973 23 H 0.119 0.881 24 O -0.379 6.379 25 C -0.155 4.155 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.168 0.832 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.134 0.866 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.084 0.916 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.755 -17.179 -1.812 19.839 hybrid contribution 1.088 1.416 1.063 2.078 sum 10.843 -15.764 -0.749 19.147 Atomic orbital electron populations 1.70240 1.07653 1.27271 1.48440 1.25902 0.95488 1.02887 0.93369 0.85507 0.79029 0.79155 0.77855 1.18892 1.20322 1.20260 1.22026 0.93285 0.92861 1.54234 0.92719 1.19115 0.87721 0.90337 0.84789 0.96898 1.86504 1.38464 1.96470 1.15518 1.22296 0.95723 0.89631 0.98550 1.60305 1.23389 1.00137 1.45142 1.20919 0.92304 0.92139 0.91240 1.19689 0.95043 0.98419 0.94149 1.21199 1.00428 0.98574 0.93062 1.21400 0.96353 1.00192 0.97428 1.21430 0.95199 0.98191 0.99963 1.21416 1.00725 0.99788 0.92399 1.21275 0.94097 1.00314 0.98732 1.24534 0.99643 1.01166 0.98672 1.22737 0.88914 0.94147 0.91503 0.88142 1.86424 1.44671 1.78330 1.28493 1.23285 1.01609 0.96292 0.94338 0.92974 0.80734 0.96749 0.92524 0.83206 0.87247 0.85550 0.84079 0.83455 0.84060 0.86556 0.92495 0.75323 0.91568 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.39 12.84 21.45 0.28 -55.11 16 2 C 0.03 1.49 5.40 84.65 0.46 1.95 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.59 -33.50 8.76 25.60 0.22 -33.27 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.24 12.87 3.08 29.85 0.09 12.96 16 10 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 11 O -0.57 -31.35 12.60 -148.98 -1.88 -33.23 16 12 C 0.07 2.95 4.76 86.30 0.41 3.36 16 13 N -0.66 -25.07 5.39 -471.26 -2.54 -27.61 16 14 C 0.13 3.71 1.01 3.31 0.00 3.72 16 15 C -0.07 -2.12 4.46 -19.86 -0.09 -2.21 16 16 C -0.11 -3.71 8.30 22.27 0.18 -3.52 16 17 C -0.14 -3.73 10.05 22.27 0.22 -3.51 16 18 C -0.13 -2.94 10.05 22.27 0.22 -2.71 16 19 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 20 C -0.13 -2.94 9.26 22.27 0.21 -2.73 16 21 C -0.20 -4.80 6.77 31.12 0.21 -4.58 16 22 C 0.09 1.81 5.27 31.12 0.16 1.98 16 23 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 24 O -0.57 -14.08 11.75 -148.98 -1.75 -15.83 16 25 C -0.12 -2.85 7.18 31.12 0.22 -2.63 16 26 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.35 17.60 9.04 -74.06 -0.67 16.93 16 28 H 0.01 0.63 6.90 -2.39 -0.02 0.62 16 29 H 0.06 2.52 6.48 -2.39 -0.02 2.50 16 30 H 0.35 13.86 6.68 -89.69 -0.60 13.26 16 31 H 0.11 4.14 7.49 -2.91 -0.02 4.11 16 32 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.14 2.52 5.86 -2.91 -0.02 2.50 16 36 H 0.12 2.15 5.74 -2.39 -0.01 2.14 16 37 H 0.06 1.60 6.83 -2.39 -0.02 1.59 16 38 H 0.40 6.41 9.12 -74.06 -0.68 5.73 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.12 2.29 8.09 -2.39 -0.02 2.27 16 Total: -1.00 -70.95 324.70 -1.97 -72.92 By element: Atomic # 1 Polarization: 46.83 SS G_CDS: -0.87 Total: 45.96 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 2.76 Total: -33.61 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -2.26 Total: -82.72 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -3.63 Total: -49.06 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -70.95 -1.97 -72.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931684698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.426 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds