Wall clock time and date at job start Mon Mar 30 2020 01:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00348 * 2 1 4 4 H 1.48499 * 109.47349 * 270.00139 * 3 2 1 5 5 H 1.48507 * 109.47003 * 29.99624 * 3 2 1 6 6 H 1.48496 * 109.47362 * 149.99772 * 3 2 1 7 7 C 1.37875 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47062 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46801 * 179.97438 * 10 9 7 12 12 C 1.46052 * 110.99885 * 66.05245 * 11 10 9 13 13 C 1.51345 * 113.61492 * 193.65000 * 12 11 10 14 14 O 1.43265 * 110.81749 * 294.66497 * 13 12 11 15 15 C 1.36177 * 115.33844 * 85.70116 * 14 13 12 16 16 C 1.38745 * 120.23658 * 110.61039 * 15 14 13 17 17 C 1.38198 * 119.64880 * 181.76085 * 16 15 14 18 18 C 1.38294 * 120.19639 * 0.28447 * 17 16 15 19 19 C 1.38384 * 120.13071 * 359.58377 * 18 17 16 20 20 C 1.38010 * 119.67058 * 359.96970 * 19 18 17 21 21 C 1.45762 * 111.04079 * 192.20620 * 11 10 9 22 22 H 1.08996 * 109.66962 * 30.79382 * 21 11 10 23 23 C 1.53001 * 109.15285 * 270.58778 * 21 11 10 24 24 O 1.42897 * 109.46910 * 64.43046 * 23 21 11 25 25 H 0.97003 * 119.99939 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47492 * 59.99506 * 9 7 2 27 27 H 1.09005 * 109.47020 * 299.99543 * 9 7 2 28 28 H 1.09007 * 109.46998 * 59.99887 * 10 9 7 29 29 H 1.08991 * 109.47058 * 299.99868 * 10 9 7 30 30 H 1.08993 * 108.66046 * 72.58002 * 12 11 10 31 31 H 1.09002 * 108.65575 * 314.71339 * 12 11 10 32 32 H 1.08998 * 109.20919 * 174.32189 * 13 12 11 33 33 H 1.08997 * 109.17409 * 54.98540 * 13 12 11 34 34 H 1.08005 * 120.17509 * 2.03442 * 16 15 14 35 35 H 1.08006 * 119.90594 * 180.30902 * 17 16 15 36 36 H 1.07989 * 119.93557 * 179.59880 * 18 17 16 37 37 H 1.07997 * 120.16297 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.46617 * 184.42279 * 23 21 11 39 39 H 1.09000 * 109.46864 * 304.42610 * 23 21 11 40 40 H 0.96701 * 114.00011 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5106 -4.9342 0.0012 12 6 0.7691 -5.1111 -1.2447 13 6 -0.2568 -6.2222 -1.1871 14 8 0.3799 -7.4952 -1.0242 15 6 0.6562 -7.8484 0.2616 16 6 -0.0400 -8.8849 0.8664 17 6 0.2246 -9.2092 2.1835 18 6 1.1741 -8.5008 2.8970 19 6 1.8702 -7.4688 2.2924 20 6 1.6124 -7.1509 0.9744 21 6 2.4004 -6.0523 0.2888 22 1 3.2078 -5.7201 0.9413 23 6 2.9825 -6.5812 -1.0236 24 8 3.7989 -5.5731 -1.6230 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8719 -3.6043 0.8906 29 1 2.8718 -3.6044 -0.8894 30 1 1.4771 -5.3313 -2.0436 31 1 0.2590 -4.1776 -1.4824 32 1 -0.8340 -6.2257 -2.1118 33 1 -0.9278 -6.0467 -0.3463 34 1 -0.7818 -9.4383 0.3096 35 1 -0.3113 -10.0186 2.6569 36 1 1.3729 -8.7536 3.9279 37 1 2.6115 -6.9149 2.8493 38 1 3.5865 -7.4659 -0.8227 39 1 2.1703 -6.8420 -1.7022 40 1 4.2013 -5.8397 -2.4609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933380618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:49 Heat of formation + Delta-G solvation = -68.730132 kcal Electronic energy + Delta-G solvation = -22300.318184 eV Core-core repulsion = 19079.719480 eV Total energy + Delta-G solvation = -3220.598704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.94780 -39.16924 -38.20557 -36.94957 -35.22292 -33.40215 -32.17014 -31.26231 -29.47005 -28.57992 -25.95226 -25.35519 -23.72013 -22.78883 -21.94600 -20.90870 -18.95285 -18.57269 -18.41890 -17.58131 -17.01471 -16.47480 -16.33946 -16.19506 -15.89872 -15.65219 -15.02055 -14.72758 -14.47881 -14.24769 -14.06798 -13.70446 -13.49044 -13.27565 -12.97678 -12.82042 -12.77533 -12.45158 -12.40468 -12.13075 -11.90643 -11.77089 -11.32997 -11.28745 -11.18119 -10.68474 -10.53319 -9.81158 -9.44993 -9.09527 -8.20082 -6.30957 0.26501 0.39990 1.39475 1.41138 1.52457 2.39560 2.44941 2.83335 3.11810 3.13174 3.26087 3.80630 3.95945 4.02650 4.12965 4.16876 4.23201 4.27319 4.31245 4.47835 4.52770 4.53695 4.58749 4.67164 4.73830 4.81894 4.93907 5.02519 5.06907 5.12285 5.43444 5.44786 5.55526 5.59926 5.68070 5.77442 5.83896 6.10242 6.27683 6.34916 6.48903 6.81022 6.85028 7.37730 8.92072 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023959 B = 0.004560 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.386511 B = 6139.403464 C = 6302.976084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.039 3.961 10 C 0.093 3.907 11 N -0.542 5.542 12 C 0.021 3.979 13 C 0.075 3.925 14 O -0.334 6.334 15 C 0.083 3.917 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.126 4.126 19 C -0.105 4.105 20 C -0.111 4.111 21 C 0.127 3.873 22 H 0.079 0.921 23 C 0.047 3.953 24 O -0.584 6.584 25 H 0.264 0.736 26 H -0.003 1.003 27 H -0.012 1.012 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.056 0.944 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.131 0.869 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -20.422 0.623 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.034 4.034 11 N -0.266 5.266 12 C -0.107 4.107 13 C 0.000 4.000 14 O -0.251 6.251 15 C 0.039 3.961 16 C -0.157 4.157 17 C -0.121 4.121 18 C -0.144 4.144 19 C -0.123 4.123 20 C -0.112 4.112 21 C 0.018 3.982 22 H 0.097 0.903 23 C -0.032 4.032 24 O -0.392 6.392 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.007 0.993 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.149 0.851 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.363 -20.052 1.335 20.143 hybrid contribution 0.988 1.093 -1.021 1.793 sum 2.352 -18.959 0.314 19.107 Atomic orbital electron populations 1.70103 1.07747 1.27753 1.51466 1.25923 0.95743 1.03166 0.94564 0.85445 0.78628 0.78405 0.78540 1.19668 1.20542 1.18923 1.21581 0.93360 0.92321 1.50908 0.92602 1.18941 0.94112 0.91930 0.94843 1.21900 0.94990 0.87363 0.99163 1.60866 1.28559 1.02004 1.35140 1.22230 0.97468 0.99745 0.91296 1.22699 0.93405 0.80198 1.03688 1.86268 1.78669 1.37170 1.23030 1.18788 0.95605 0.96806 0.84853 1.21452 0.99808 0.98773 0.95620 1.21422 0.97486 1.00054 0.93121 1.21514 0.96306 0.95269 1.01310 1.21164 1.00389 0.97749 0.93015 1.20124 0.98411 0.97141 0.95547 1.20582 0.92778 0.89462 0.95380 0.90300 1.22967 0.94486 0.90199 0.95510 1.86541 1.67779 1.42588 1.42319 0.92736 0.98486 0.99314 0.93193 0.94822 0.93308 0.91066 0.85263 0.92567 0.83723 0.82365 0.82977 0.85096 0.92894 0.90650 0.75855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -32.18 9.11 25.60 0.23 -31.94 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.04 2.18 4.92 29.85 0.15 2.33 16 10 C 0.09 4.28 4.51 86.30 0.39 4.67 16 11 N -0.54 -21.27 4.29 -882.10 -3.78 -25.05 16 12 C 0.02 0.73 4.71 85.92 0.40 1.14 16 13 C 0.07 2.16 6.59 71.44 0.47 2.63 16 14 O -0.33 -9.47 8.11 -95.57 -0.78 -10.24 16 15 C 0.08 2.30 5.40 22.37 0.12 2.43 16 16 C -0.14 -3.04 10.01 22.38 0.22 -2.82 16 17 C -0.10 -1.86 10.04 22.27 0.22 -1.64 16 18 C -0.13 -2.45 10.05 22.32 0.22 -2.23 16 19 C -0.10 -2.62 9.69 22.25 0.22 -2.41 16 20 C -0.11 -3.27 5.03 -19.65 -0.10 -3.36 16 21 C 0.13 4.21 2.48 44.67 0.11 4.32 16 22 H 0.08 2.73 7.32 -2.39 -0.02 2.71 16 23 C 0.05 1.37 5.28 71.98 0.38 1.75 16 24 O -0.58 -17.63 11.17 -148.98 -1.66 -19.30 16 25 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.00 -0.18 6.28 -2.39 -0.02 -0.20 16 27 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 28 H 0.05 2.32 7.72 -2.38 -0.02 2.31 16 29 H 0.03 1.59 6.61 -2.39 -0.02 1.57 16 30 H 0.05 1.69 5.34 -2.39 -0.01 1.68 16 31 H 0.07 2.91 5.88 -2.39 -0.01 2.89 16 32 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.06 1.73 7.90 -2.39 -0.02 1.71 16 34 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.15 2.03 8.06 -2.92 -0.02 2.01 16 37 H 0.13 3.04 7.99 -2.91 -0.02 3.01 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 2.22 4.13 -2.39 -0.01 2.21 16 40 H 0.39 7.90 9.12 -74.06 -0.68 7.23 16 Total: -1.00 -71.24 313.93 -0.03 -71.26 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.38 Total: 17.87 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 3.51 Total: -24.44 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -3.50 Total: -82.45 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -2.44 Total: -29.54 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.24 -0.03 -71.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933380618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.535 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds