Wall clock time and date at job start Mon Mar 30 2020 01:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48506 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47031 * 299.99756 * 3 2 1 6 6 H 1.48498 * 109.47222 * 59.99746 * 3 2 1 7 7 C 1.37868 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00414 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47171 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00204 * 180.02562 * 11 10 9 13 13 H 1.09007 * 109.43457 * 325.08144 * 12 11 10 14 14 C 1.50771 * 109.44080 * 84.99937 * 12 11 10 15 15 C 1.38505 * 118.75988 * 282.13373 * 14 12 11 16 16 C 1.38106 * 120.31196 * 179.35115 * 15 14 12 17 17 C 1.38285 * 119.98207 * 0.54544 * 16 15 14 18 18 C 1.37973 * 119.95808 * 359.52452 * 17 16 15 19 19 C 1.38370 * 121.40255 * 101.92606 * 14 12 11 20 20 O 1.35840 * 121.79541 * 0.81481 * 19 14 12 21 21 C 1.42820 * 117.87577 * 342.61900 * 20 19 14 22 22 C 1.53072 * 109.40702 * 205.18405 * 12 11 10 23 23 H 1.08997 * 109.70258 * 168.54331 * 22 12 11 24 24 C 1.52998 * 109.70084 * 47.94512 * 22 12 11 25 25 O 1.42898 * 109.47329 * 175.00335 * 24 22 12 26 26 H 0.97006 * 119.99542 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47043 * 60.00076 * 9 7 2 28 28 H 1.08998 * 109.46858 * 299.99952 * 9 7 2 29 29 H 1.09006 * 109.47335 * 60.00279 * 10 9 7 30 30 H 1.08998 * 109.47436 * 299.99899 * 10 9 7 31 31 H 1.00894 * 111.00184 * 303.95472 * 11 10 9 32 32 H 1.07998 * 119.84609 * 359.62428 * 15 14 12 33 33 H 1.08004 * 120.00781 * 180.26317 * 16 15 14 34 34 H 1.08002 * 120.02284 * 179.81167 * 17 16 15 35 35 H 1.08003 * 119.88891 * 180.27779 * 18 17 16 36 36 H 1.09000 * 109.67903 * 289.43319 * 21 20 19 37 37 H 1.09000 * 109.67701 * 168.89003 * 21 20 19 38 38 H 1.09009 * 109.46863 * 295.00700 * 24 22 12 39 39 H 1.09001 * 109.46837 * 55.00024 * 24 22 12 40 40 H 0.96697 * 113.99674 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5107 -4.9342 0.0012 12 6 2.4351 -6.0759 0.0018 13 1 3.3184 -5.8276 -0.5867 14 6 2.8471 -6.3872 1.4183 15 6 3.8026 -5.5889 2.0251 16 6 4.1940 -5.8369 3.3261 17 6 3.6394 -6.8933 4.0251 18 6 2.6882 -7.6927 3.4253 19 6 2.2889 -7.4437 2.1159 20 8 1.3579 -8.2590 1.5557 21 6 0.6864 -7.7986 0.3823 22 6 1.7398 -7.2937 -0.6120 23 1 2.4723 -8.0783 -0.8013 24 6 1.0611 -6.8935 -1.9235 25 8 0.5136 -8.0551 -2.5503 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8903 29 1 2.8718 -3.6043 0.8906 30 1 2.8718 -3.6043 -0.8894 31 1 0.8745 -4.9841 0.7827 32 1 4.2404 -4.7659 1.4798 33 1 4.9364 -5.2087 3.7959 34 1 3.9472 -7.0897 5.0416 35 1 2.2525 -8.5148 3.9738 36 1 0.0081 -6.9860 0.6426 37 1 0.1235 -8.6184 -0.0640 38 1 0.2621 -6.1814 -1.7166 39 1 1.7943 -6.4343 -2.5866 40 1 0.0673 -7.8758 -3.3892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934211256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:47 Heat of formation + Delta-G solvation = -93.322513 kcal Electronic energy + Delta-G solvation = -21780.266963 eV Core-core repulsion = 18558.601854 eV Total energy + Delta-G solvation = -3221.665109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.97846 -38.70254 -38.23329 -37.24112 -35.40250 -33.60497 -31.89265 -31.34526 -30.23701 -26.96670 -26.67520 -25.16809 -23.77770 -22.96668 -22.39115 -20.35869 -19.00168 -18.48814 -18.30756 -17.55297 -16.91896 -16.68175 -16.39396 -16.21072 -15.63239 -15.49127 -15.04843 -14.91538 -14.71533 -14.30942 -14.24274 -13.91863 -13.65134 -13.15725 -13.03814 -12.89656 -12.67305 -12.43047 -12.33489 -12.20320 -11.96958 -11.78049 -11.52494 -11.33646 -11.14075 -10.80591 -10.57701 -9.94095 -9.45685 -9.05064 -8.20761 -6.31642 0.30438 0.44020 1.40038 1.40533 1.53322 2.31359 2.39800 2.75449 3.13430 3.14677 3.24049 3.61146 3.73200 3.82695 3.97074 4.16793 4.19557 4.28339 4.45283 4.48791 4.51235 4.58236 4.62930 4.66399 4.73679 4.83055 4.92493 5.01391 5.08734 5.14630 5.31363 5.43830 5.47967 5.56980 5.66984 5.76161 5.82694 6.06342 6.19576 6.37256 6.44781 6.85781 6.92069 7.37862 8.91498 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.005061 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.654636 B = 5531.487557 C = 6864.815239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.081 3.919 11 N -0.670 5.670 12 C 0.136 3.864 13 H 0.092 0.908 14 C -0.201 4.201 15 C -0.090 4.090 16 C -0.159 4.159 17 C -0.080 4.080 18 C -0.163 4.163 19 C 0.121 3.879 20 O -0.326 6.326 21 C 0.071 3.929 22 C -0.102 4.102 23 H 0.086 0.914 24 C 0.102 3.898 25 O -0.591 6.591 26 H 0.263 0.737 27 H -0.003 1.003 28 H -0.014 1.014 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.334 0.666 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.143 0.857 36 H 0.062 0.938 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 -16.387 2.362 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.003 4.003 10 C -0.048 4.048 11 N -0.299 5.299 12 C 0.026 3.974 13 H 0.110 0.890 14 C -0.204 4.204 15 C -0.109 4.109 16 C -0.177 4.177 17 C -0.098 4.098 18 C -0.181 4.181 19 C 0.075 3.925 20 O -0.240 6.240 21 C -0.003 4.003 22 C -0.122 4.122 23 H 0.104 0.896 24 C 0.024 3.976 25 O -0.399 6.399 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.005 0.995 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.176 0.824 35 H 0.161 0.839 36 H 0.080 0.920 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.644 -16.743 2.219 17.808 hybrid contribution 0.154 1.637 0.174 1.653 sum 5.799 -15.106 2.393 16.357 Atomic orbital electron populations 1.70113 1.07804 1.27657 1.51634 1.25933 0.95702 1.03259 0.94727 0.85418 0.79134 0.78881 0.77718 1.18500 1.20424 1.20527 1.21616 0.93516 0.92147 1.50553 0.92102 1.18889 0.94247 0.92245 0.94930 1.21919 0.95815 0.87796 0.99221 1.60911 1.18625 1.01384 1.48994 1.20401 0.95342 0.90779 0.90863 0.89017 1.20605 1.01906 0.99275 0.98611 1.21197 0.95745 0.97810 0.96129 1.21342 1.02397 0.99484 0.94514 1.21293 0.94381 0.93439 1.00722 1.20900 1.01647 1.03425 0.92159 1.18995 0.90284 0.90538 0.92688 1.85957 1.51222 1.43410 1.43422 1.23071 0.93338 1.01269 0.82650 1.21709 0.98295 0.96904 0.95264 0.89565 1.21757 0.97369 0.86593 0.91875 1.86335 1.77263 1.34407 1.41940 0.92818 0.98507 0.99522 0.95487 0.91921 0.84832 0.86038 0.84008 0.82390 0.83872 0.92014 0.85941 0.92358 0.93229 0.75224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.44 0.28 -56.10 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.78 5.23 29.85 0.16 1.94 16 10 C 0.08 3.24 5.32 86.30 0.46 3.70 16 11 N -0.67 -22.54 4.90 -495.20 -2.43 -24.97 16 12 C 0.14 3.89 2.17 44.22 0.10 3.99 16 13 H 0.09 2.60 7.79 -2.38 -0.02 2.58 16 14 C -0.20 -5.84 5.04 -19.75 -0.10 -5.94 16 15 C -0.09 -2.53 8.63 22.30 0.19 -2.34 16 16 C -0.16 -3.80 10.04 22.25 0.22 -3.58 16 17 C -0.08 -1.72 10.04 22.22 0.22 -1.49 16 18 C -0.16 -3.96 9.94 22.42 0.22 -3.74 16 19 C 0.12 3.43 6.47 22.52 0.15 3.58 16 20 O -0.33 -9.21 10.27 -91.75 -0.94 -10.15 16 21 C 0.07 1.83 6.23 72.12 0.45 2.28 16 22 C -0.10 -2.63 2.50 -10.63 -0.03 -2.65 16 23 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 24 C 0.10 2.47 6.02 71.98 0.43 2.90 16 25 O -0.59 -12.66 13.21 -148.98 -1.97 -14.63 16 26 H 0.26 14.93 8.31 -92.70 -0.77 14.15 16 27 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 29 H 0.03 1.07 5.67 -2.38 -0.01 1.05 16 30 H 0.06 2.46 8.05 -2.39 -0.02 2.44 16 31 H 0.33 11.81 7.76 -89.70 -0.70 11.11 16 32 H 0.12 3.46 6.67 -2.91 -0.02 3.45 16 33 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.06 1.66 7.27 -2.39 -0.02 1.64 16 37 H 0.12 2.83 7.79 -2.39 -0.02 2.81 16 38 H 0.06 1.56 7.54 -2.38 -0.02 1.54 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.40 5.14 9.12 -74.06 -0.68 4.47 16 Total: -1.00 -65.80 325.18 -0.17 -65.97 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.32 Total: 24.85 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 3.17 Total: -30.75 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.14 Total: -81.07 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -2.91 Total: -24.78 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.80 -0.17 -65.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934211256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.352 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds