Wall clock time and date at job start Mon Mar 30 2020 02:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05809 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94633 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47464 * 265.00532 * 7 6 5 9 9 O 1.21282 * 119.99932 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00106 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.46841 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99952 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99922 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00026 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47127 * 60.00192 * 17 15 13 19 19 H 1.48506 * 109.47034 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47145 * 299.99760 * 17 15 13 21 21 C 1.38246 * 120.11014 * 0.02562 * 6 5 4 22 22 C 1.50704 * 119.97128 * 180.02562 * 21 6 5 23 23 C 1.38162 * 120.05734 * 359.76698 * 21 6 5 24 24 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 26 26 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.02961 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.47297 * 25.00295 * 7 6 5 30 30 H 1.09002 * 109.47382 * 144.99782 * 7 6 5 31 31 H 0.96996 * 120.00088 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.46761 * 300.00220 * 11 10 8 33 33 H 1.08997 * 109.46865 * 59.99452 * 11 10 8 34 34 H 1.08999 * 109.47289 * 299.99906 * 12 11 10 35 35 H 1.09001 * 109.46836 * 60.00470 * 12 11 10 36 36 H 0.97002 * 119.99746 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.46973 * 90.00063 * 22 21 6 38 38 H 1.08992 * 109.47226 * 210.00189 * 22 21 6 39 39 H 1.09000 * 109.46823 * 330.00052 * 22 21 6 40 40 H 1.07998 * 120.02953 * 180.25220 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 6 4.3237 5.4103 -1.4159 9 8 4.0375 4.6717 -2.3343 10 7 4.9448 6.5811 -1.6612 11 6 5.2736 6.9617 -3.0372 12 6 5.9681 8.3250 -3.0371 13 6 6.3069 8.7162 -4.4525 14 1 6.0520 8.0585 -5.2702 15 6 6.9424 9.9138 -4.7033 16 7 7.2532 10.7145 -3.7074 17 14 7.3617 10.3990 -6.4578 18 1 6.1150 10.4794 -7.2606 19 1 8.0359 11.7222 -6.4577 20 1 8.2671 9.3817 -7.0498 21 6 4.0559 2.5172 -0.0011 22 6 5.5607 2.5983 -0.0011 23 6 3.4311 1.2849 0.0038 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2127 2.3204 0.0014 28 1 1.3339 4.5114 0.0008 29 1 3.3213 5.7651 0.4342 30 1 4.9012 4.9600 0.5886 31 1 5.1740 7.1717 -0.9267 32 1 5.9382 6.2149 -3.4717 33 1 4.3585 7.0205 -3.6264 34 1 5.3032 9.0715 -2.6027 35 1 6.8832 8.2665 -2.4477 36 1 7.7006 11.5569 -3.8839 37 1 5.9236 2.6173 1.0266 38 1 5.9714 1.7294 -0.5153 39 1 5.8756 3.5067 -0.5145 40 1 4.0206 0.3800 0.0075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:31 Heat of formation + Delta-G solvation = -70.530864 kcal Electronic energy + Delta-G solvation = -20549.570434 eV Core-core repulsion = 17328.893644 eV Total energy + Delta-G solvation = -3220.676789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44784 -39.24713 -37.69241 -34.81013 -32.88218 -32.69286 -32.18491 -29.80910 -28.58793 -26.70970 -26.51259 -24.50712 -22.35976 -21.26789 -20.75608 -19.84544 -17.84912 -16.80044 -16.65300 -16.27175 -15.88518 -15.73787 -15.08090 -14.65808 -14.46246 -14.25078 -13.90509 -13.69780 -13.37758 -13.12498 -12.95729 -12.35447 -12.31140 -12.25226 -12.07563 -11.82343 -11.37837 -11.20614 -11.01304 -10.99245 -10.85007 -10.65742 -10.31100 -9.78616 -9.46244 -9.19639 -8.80989 -8.52682 -8.33777 -8.10464 -6.09618 -4.12458 1.29569 1.37098 3.05093 3.11182 3.31047 3.34760 3.37778 3.53584 3.94599 4.42281 4.65478 4.67977 4.80836 4.87560 4.91449 5.13431 5.19515 5.21522 5.24572 5.27336 5.33088 5.47276 5.56533 5.59733 5.72015 5.89826 6.06612 6.23934 6.31507 6.35881 6.37177 6.61539 6.71243 6.74916 6.94987 7.28556 7.51746 7.61780 7.88697 8.04903 8.28184 8.70416 8.93467 9.52351 11.01915 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038008 B = 0.002778 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.511052 B =10078.141759 C =10225.127338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.064 4.064 6 C -0.096 4.096 7 C -0.102 4.102 8 C 0.504 3.496 9 O -0.541 6.541 10 N -0.725 5.725 11 C 0.122 3.878 12 C 0.013 3.987 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.029 4.029 22 C -0.118 4.118 23 C -0.152 4.152 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.397 0.603 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 -16.723 12.914 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.231 4.231 5 C -0.082 4.082 6 C -0.096 4.096 7 C -0.142 4.142 8 C 0.289 3.711 9 O -0.418 6.418 10 N -0.376 5.376 11 C 0.000 4.000 12 C -0.024 4.024 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.029 4.029 22 C -0.175 4.175 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.231 0.769 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.473 -17.263 12.262 23.623 hybrid contribution 0.021 0.870 -0.643 1.082 sum -10.452 -16.393 11.618 22.649 Atomic orbital electron populations 1.23023 0.78606 1.03692 1.01372 1.86046 1.21232 1.27179 1.88951 1.18957 0.92267 0.83977 0.96808 1.21105 0.99743 0.92281 1.10013 1.20753 0.93725 0.97081 0.96680 1.19080 0.93212 0.93486 1.03864 1.20672 1.02352 0.95460 0.95746 1.20469 0.78192 0.81671 0.90724 1.90699 1.53289 1.51589 1.46258 1.46355 1.59670 1.20340 1.11186 1.21697 0.99360 0.99043 0.79907 1.19315 0.95571 0.89447 0.98098 1.21023 1.38652 1.04081 0.92349 0.92336 1.24994 0.95560 0.96349 0.97369 1.69945 1.41175 1.11226 1.30992 0.86573 0.78716 0.77646 0.84610 1.20119 1.21233 1.20098 1.19479 0.95984 0.91572 0.95843 1.20857 0.90820 1.03581 1.02195 1.20189 0.91236 0.97930 1.07742 0.92752 0.92644 0.88430 0.85684 0.85858 0.88331 0.88118 0.76944 0.92668 0.92717 0.95978 0.95952 0.92791 0.90831 0.91205 0.91008 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.68 10.50 -19.44 -0.20 -3.88 16 3 C 0.12 1.57 6.69 -39.22 -0.26 1.31 16 4 C -0.21 -2.50 9.04 -39.43 -0.36 -2.85 16 5 C -0.06 -0.79 9.67 -39.61 -0.38 -1.18 16 6 C -0.10 -1.26 4.37 -104.60 -0.46 -1.71 16 7 C -0.10 -1.23 5.15 -29.04 -0.15 -1.38 16 8 C 0.50 8.37 7.04 -10.99 -0.08 8.30 16 9 O -0.54 -11.25 16.03 5.56 0.09 -11.16 16 10 N -0.73 -12.38 5.56 -60.29 -0.33 -12.72 16 11 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 13 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 17 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.03 -0.37 5.88 -104.64 -0.62 -0.98 16 22 C -0.12 -1.31 9.21 36.01 0.33 -0.98 16 23 C -0.15 -1.94 9.64 -39.43 -0.38 -2.32 16 24 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 25 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 28 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 30 H 0.10 0.99 6.98 -51.93 -0.36 0.63 16 31 H 0.40 5.74 8.47 -40.82 -0.35 5.39 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.07 0.89 6.15 -51.93 -0.32 0.57 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -33.40 338.39 -7.48 -40.89 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.92 Total: 1.84 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.93 Total: -11.11 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.40 Total: -38.06 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.11 Total: -15.04 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.40 -7.48 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.644 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds