Wall clock time and date at job start Mon Mar 30 2020 01:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47090 * 270.95173 * 3 2 1 5 5 H 1.48499 * 109.46915 * 30.95009 * 3 2 1 6 6 H 1.48500 * 109.47130 * 150.94887 * 3 2 1 7 7 C 1.37878 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99919 * 358.40878 * 7 2 1 9 9 C 1.50701 * 120.00188 * 178.40567 * 7 2 1 10 10 C 1.53003 * 115.54526 * 86.86766 * 9 7 2 11 11 N 1.46500 * 109.47238 * 32.93179 * 10 9 7 12 12 C 1.34771 * 119.99754 * 185.55473 * 11 10 9 13 13 O 1.21284 * 120.00331 * 4.72760 * 12 11 10 14 14 C 1.50695 * 120.00254 * 184.72146 * 12 11 10 15 15 H 1.09003 * 110.66361 * 48.19530 * 14 12 11 16 16 C 1.54998 * 110.90931 * 284.87281 * 14 12 11 17 17 C 1.55816 * 102.78942 * 241.59530 * 16 14 12 18 18 H 1.09004 * 115.38725 * 158.10950 * 17 16 14 19 19 O 1.46532 * 101.24141 * 32.41927 * 17 16 14 20 20 C 1.46540 * 99.68263 * 305.83739 * 19 17 16 21 21 H 1.09000 * 115.68313 * 179.65458 * 20 19 17 22 22 C 1.55820 * 101.24093 * 305.83972 * 20 19 17 23 23 H 1.09004 * 118.19202 * 171.69076 * 22 20 19 24 24 C 1.56898 * 117.22088 * 331.20107 * 22 20 19 25 25 C 1.53009 * 60.00558 * 88.79897 * 24 22 20 26 26 H 1.09000 * 120.22182 * 113.71204 * 25 24 22 27 27 C 1.52996 * 117.52092 * 232.57224 * 9 7 2 28 28 C 1.52993 * 117.49703 * 301.20156 * 9 7 2 29 29 H 0.96991 * 119.99957 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47335 * 272.92539 * 10 9 7 31 31 H 1.09003 * 109.46461 * 152.93086 * 10 9 7 32 32 H 0.96995 * 119.99837 * 5.55257 * 11 10 9 33 33 H 1.08999 * 110.74789 * 359.92609 * 16 14 12 34 34 H 1.09006 * 110.75239 * 123.27295 * 16 14 12 35 35 H 1.09000 * 118.38844 * 341.80806 * 24 22 20 36 36 H 1.09000 * 116.88884 * 196.45436 * 24 22 20 37 37 H 1.08997 * 117.49663 * 214.97678 * 27 9 7 38 38 H 1.09007 * 117.49686 * 359.97438 * 27 9 7 39 39 H 1.09004 * 117.50509 * 359.97044 * 28 9 7 40 40 H 1.09003 * 117.50180 * 144.99405 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4766 2.0580 -1.3999 5 1 1.4568 2.6467 0.7200 6 1 3.5567 1.4344 0.6799 7 6 2.0046 -1.1941 -0.0005 8 1 1.4649 -2.1292 0.0250 9 6 3.5112 -1.1943 -0.0368 10 6 4.2040 -1.1005 1.3241 11 7 3.3926 -1.7854 2.3334 12 6 3.7499 -1.7364 3.6320 13 8 4.6928 -1.0557 3.9762 14 6 2.9778 -2.5273 4.6563 15 1 2.8371 -3.5553 4.3224 16 6 1.6136 -1.8569 4.9595 17 6 1.7242 -1.5206 6.4769 18 1 1.0606 -0.7313 6.8302 19 8 3.1584 -1.2494 6.6056 20 6 3.6956 -2.4894 6.0388 21 1 4.7827 -2.5604 6.0031 22 6 2.9709 -3.5599 6.9088 23 1 3.0701 -4.6076 6.6246 24 6 2.5730 -3.1481 8.3696 25 6 1.6066 -2.8895 7.2119 26 1 0.6567 -3.4216 7.1609 27 6 4.1921 -2.0335 -1.1199 28 6 4.1893 -0.5071 -1.2237 29 1 -0.4850 0.8400 0.0004 30 1 4.3202 -0.0527 1.6012 31 1 5.1851 -1.5718 1.2655 32 1 2.5982 -2.2741 2.0671 33 1 1.4906 -0.9481 4.3704 34 1 0.7931 -2.5509 4.7766 35 1 3.0639 -2.2834 8.8161 36 1 2.3255 -3.9551 9.0592 37 1 5.1335 -2.5189 -0.8628 38 1 3.5503 -2.5861 -1.8062 39 1 3.5458 -0.0552 -1.9786 40 1 5.1291 0.0119 -1.0351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935782643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:19 Heat of formation + Delta-G solvation = -24.842205 kcal Electronic energy + Delta-G solvation = -22158.459641 eV Core-core repulsion = 18939.764060 eV Total energy + Delta-G solvation = -3218.695580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.50306 -40.29658 -38.66888 -35.06735 -34.99896 -34.26116 -33.13876 -30.43403 -28.45755 -27.32723 -25.01187 -23.58658 -23.31737 -21.43643 -21.31302 -21.01400 -20.48595 -18.50973 -18.16783 -17.71549 -17.27418 -16.81229 -16.48285 -15.88899 -15.64500 -15.25703 -14.83804 -14.72005 -14.45343 -14.12971 -13.98466 -13.55129 -13.36985 -13.12730 -12.85027 -12.61095 -12.43731 -12.29577 -12.16520 -12.08483 -12.03257 -11.57520 -11.18089 -11.04834 -10.99341 -10.76723 -10.65148 -10.54073 -10.36945 -9.78280 -8.32967 -6.37889 1.28238 1.36198 1.44983 1.67926 2.24305 2.32931 2.64785 2.80037 3.03878 3.18945 3.47759 3.53750 3.60711 3.84210 3.90998 4.04924 4.05955 4.15865 4.21718 4.32961 4.39010 4.41245 4.60540 4.63419 4.66282 4.81309 4.84217 4.86181 4.88938 4.94443 4.98777 5.06591 5.15092 5.20921 5.33995 5.47737 5.55922 5.60585 5.72576 6.27787 6.68517 6.78380 7.33374 7.35892 8.80365 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.005215 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.802072 B = 5367.429060 C = 5794.518723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.043 3.957 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.305 1.305 6 H -0.250 1.250 7 C -0.475 4.475 8 H 0.055 0.945 9 C -0.041 4.041 10 C 0.157 3.843 11 N -0.697 5.697 12 C 0.510 3.490 13 O -0.592 6.592 14 C -0.127 4.127 15 H 0.135 0.865 16 C -0.129 4.129 17 C 0.078 3.922 18 H 0.140 0.860 19 O -0.397 6.397 20 C 0.111 3.889 21 H 0.122 0.878 22 C -0.197 4.197 23 H 0.150 0.850 24 C -0.128 4.128 25 C -0.183 4.183 26 H 0.146 0.854 27 C -0.152 4.152 28 C -0.198 4.198 29 H 0.264 0.736 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.413 0.587 33 H 0.051 0.949 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -9.251 11.991 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.157 4.157 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.233 1.233 6 H -0.173 1.173 7 C -0.513 4.513 8 H 0.073 0.927 9 C -0.042 4.042 10 C 0.033 3.967 11 N -0.347 5.347 12 C 0.297 3.703 13 O -0.474 6.474 14 C -0.148 4.148 15 H 0.153 0.847 16 C -0.167 4.167 17 C 0.021 3.979 18 H 0.157 0.843 19 O -0.317 6.317 20 C 0.053 3.947 21 H 0.140 0.860 22 C -0.215 4.215 23 H 0.167 0.833 24 C -0.165 4.165 25 C -0.201 4.201 26 H 0.164 0.836 27 C -0.189 4.189 28 C -0.236 4.236 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.251 0.749 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.147 0.853 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.310 -8.468 12.259 15.510 hybrid contribution -0.409 1.071 -0.729 1.359 sum 3.901 -7.396 11.530 14.243 Atomic orbital electron populations 1.69974 1.07594 1.27722 1.51921 1.25472 0.94856 1.01494 0.93836 0.86273 0.80141 0.80631 0.78688 1.19374 1.23273 1.17349 1.20235 0.88011 0.92990 1.50020 0.92687 1.19544 0.93548 1.03839 0.87294 1.20904 0.92651 0.95403 0.87745 1.45986 1.29837 1.53069 1.05801 1.20967 0.84130 0.81729 0.83494 1.90628 1.32149 1.43627 1.80986 1.22944 0.96034 1.01438 0.94391 0.84699 1.23123 0.96046 1.01130 0.96409 1.24476 0.83110 0.96689 0.93606 0.84295 1.90121 1.19862 1.39017 1.82676 1.24006 0.98686 0.82984 0.89041 0.86017 1.24951 0.98741 0.99412 0.98426 0.83267 1.23488 1.00360 1.03044 0.89572 1.24347 0.96033 0.96848 1.02823 0.83645 1.22952 1.01551 0.92119 1.02264 1.22994 1.01817 0.96524 1.02222 0.92658 0.94658 0.92069 0.74947 0.92995 0.86929 0.89766 0.85313 0.87833 0.89478 0.90473 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.96 21.45 0.30 -53.98 16 2 C 0.04 2.33 5.47 84.65 0.46 2.80 16 3 Si 0.92 44.24 25.20 68.60 1.73 45.97 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.31 -15.20 7.11 99.48 0.71 -14.50 16 6 H -0.25 -11.76 5.27 99.48 0.52 -11.24 16 7 C -0.47 -24.02 7.80 25.60 0.20 -23.82 16 8 H 0.06 3.00 8.06 -2.91 -0.02 2.98 16 9 C -0.04 -1.74 1.24 -52.93 -0.07 -1.81 16 10 C 0.16 6.52 5.61 86.38 0.48 7.00 16 11 N -0.70 -27.10 5.28 -463.06 -2.45 -29.54 16 12 C 0.51 19.34 6.97 87.66 0.61 19.95 16 13 O -0.59 -26.97 15.99 -3.04 -0.05 -27.02 16 14 C -0.13 -3.58 2.89 -9.88 -0.03 -3.61 16 15 H 0.14 2.94 8.03 -2.39 -0.02 2.92 16 16 C -0.13 -3.53 6.16 32.25 0.20 -3.33 16 17 C 0.08 1.97 5.65 32.54 0.18 2.15 16 18 H 0.14 3.12 8.14 -2.38 -0.02 3.10 16 19 O -0.40 -12.98 10.82 -148.98 -1.61 -14.59 16 20 C 0.11 3.04 4.51 32.54 0.15 3.19 16 21 H 0.12 3.55 7.91 -2.39 -0.02 3.53 16 22 C -0.20 -3.74 6.79 -7.77 -0.05 -3.79 16 23 H 0.15 2.10 8.14 -2.38 -0.02 2.08 16 24 C -0.13 -2.19 9.98 31.96 0.32 -1.87 16 25 C -0.18 -3.33 6.50 -9.13 -0.06 -3.39 16 26 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 27 C -0.15 -5.39 9.88 30.59 0.30 -5.09 16 28 C -0.20 -7.69 7.65 30.59 0.23 -7.46 16 29 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 30 H 0.04 1.65 6.30 -2.39 -0.02 1.63 16 31 H 0.06 2.31 7.89 -2.39 -0.02 2.30 16 32 H 0.41 15.66 7.30 -92.71 -0.68 14.99 16 33 H 0.05 1.77 7.77 -2.39 -0.02 1.75 16 34 H 0.11 2.47 8.03 -2.38 -0.02 2.45 16 35 H 0.08 1.75 7.72 -2.39 -0.02 1.73 16 36 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 3.09 8.04 -2.39 -0.02 3.07 16 38 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 39 H 0.08 3.19 7.29 -2.38 -0.02 3.17 16 40 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -67.29 319.31 1.04 -66.24 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.19 Total: 31.99 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 2.94 Total: -19.07 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.15 Total: -83.53 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.66 Total: -41.61 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.73 Total: 45.97 kcal Total: -67.29 1.04 -66.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.403 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds