Wall clock time and date at job start Mon Mar 30 2020 01:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46912 * 2 1 4 4 C 1.50700 * 109.47081 * 240.00200 * 2 1 3 5 5 H 1.08001 * 119.99810 * 245.01317 * 4 2 1 6 6 C 1.37872 * 119.99860 * 65.01283 * 4 2 1 7 7 N 1.31517 * 120.00542 * 5.96695 * 6 4 2 8 8 Si 1.86806 * 119.99824 * 185.97132 * 6 4 2 9 9 H 1.48501 * 109.47272 * 94.99352 * 8 6 4 10 10 H 1.48497 * 109.46946 * 214.99425 * 8 6 4 11 11 H 1.48499 * 109.47112 * 334.99170 * 8 6 4 12 12 N 1.46897 * 109.47214 * 119.99938 * 2 1 3 13 13 C 1.46904 * 110.99749 * 58.95506 * 12 2 1 14 14 C 1.38413 * 111.00138 * 295.00045 * 12 2 1 15 15 N 1.31373 * 126.35653 * 14.08541 * 14 12 2 16 16 N 1.28510 * 110.11365 * 179.97438 * 15 14 12 17 17 C 1.31394 * 109.92383 * 359.97438 * 16 15 14 18 18 C 1.47404 * 126.49069 * 179.97438 * 17 16 15 19 19 C 1.36951 * 127.16686 * 342.93034 * 18 17 16 20 20 N 1.33454 * 106.35322 * 179.90415 * 19 18 17 21 21 N 1.28528 * 109.36625 * 0.36949 * 20 19 18 22 22 N 1.28705 * 110.62100 * 359.76385 * 21 20 19 23 23 H 0.96998 * 126.00047 * 180.02562 * 22 21 20 24 24 N 1.36500 * 126.35592 * 194.05701 * 14 12 2 25 25 C 1.46508 * 127.17640 * 0.04021 * 24 14 12 26 26 H 1.08996 * 109.47101 * 185.56297 * 1 2 3 27 27 H 1.09000 * 109.47033 * 305.55995 * 1 2 3 28 28 H 1.08999 * 109.47071 * 65.55774 * 1 2 3 29 29 H 0.97000 * 120.00025 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46910 * 289.21699 * 13 12 2 31 31 H 1.09000 * 109.46922 * 49.22218 * 13 12 2 32 32 H 1.08999 * 109.47048 * 169.22122 * 13 12 2 33 33 H 1.08000 * 126.82273 * 0.02562 * 19 18 17 34 34 H 1.09000 * 109.46617 * 95.94980 * 25 24 14 35 35 H 1.08991 * 109.47310 * 215.95133 * 25 24 14 36 36 H 1.09003 * 109.46908 * 335.95590 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5849 -1.6333 -1.1335 6 6 1.7866 -0.1821 -2.4800 7 7 1.2180 0.9983 -2.5949 8 14 2.2612 -1.1429 -4.0101 9 1 1.0878 -1.9134 -4.4946 10 1 2.7058 -0.2006 -5.0682 11 1 3.3673 -2.0785 -3.6839 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6702 -0.0031 2.3476 15 7 0.7877 0.9660 2.4360 16 7 0.7088 1.3827 3.6491 17 6 1.5369 0.7037 4.4105 18 6 1.7416 0.8817 5.8593 19 6 1.3761 1.9602 6.6202 20 7 1.7562 1.6847 7.8695 21 7 2.3231 0.5316 7.8980 22 7 2.3418 0.0064 6.7232 23 1 2.7152 -0.8581 6.4910 24 7 2.1782 -0.2044 3.5985 25 6 3.1940 -1.1830 3.9946 26 1 -0.3633 -1.0228 0.0996 27 1 -0.3633 0.5976 0.8360 28 1 -0.3633 0.4252 -0.9356 29 1 1.0448 1.3697 -3.4740 30 1 0.4588 -2.0749 1.4559 31 1 1.7096 -2.5585 0.2854 32 1 2.0522 -2.6215 2.0309 33 1 0.8775 2.8548 6.2777 34 1 4.1737 -0.7053 4.0058 35 1 2.9638 -1.5632 4.9898 36 1 3.2004 -2.0084 3.2827 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121358023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:02 Heat of formation + Delta-G solvation = 206.851211 kcal Electronic energy + Delta-G solvation = -21597.346559 eV Core-core repulsion = 18349.743117 eV Total energy + Delta-G solvation = -3247.603441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.53506 -42.62209 -37.57028 -35.23151 -33.60809 -32.97846 -32.15971 -29.20784 -28.83329 -27.91807 -25.53189 -25.27092 -23.77872 -23.32016 -21.75424 -21.40836 -19.69781 -18.64444 -16.97156 -16.68594 -16.26962 -15.99107 -15.85438 -15.26030 -14.70422 -14.51155 -14.14568 -13.69050 -13.37162 -13.12881 -12.51623 -12.24010 -11.84202 -11.65635 -11.42409 -11.33723 -11.04590 -10.98036 -10.88292 -10.71017 -10.54771 -10.28736 -10.15598 -10.13332 -9.87795 -8.97269 -8.87560 -8.49589 -7.66453 -6.15410 -4.21134 0.74474 1.94178 2.08691 2.23565 2.45458 3.13129 3.22250 3.29973 3.31379 3.80239 4.16379 4.24067 4.39429 4.42113 4.72353 4.80572 4.95313 5.03497 5.18562 5.32723 5.51869 5.79506 5.82045 5.90544 5.93875 6.26052 6.35178 6.49519 6.67747 6.93427 7.10887 7.22228 7.42265 7.61750 7.80429 8.06653 8.11407 8.28126 8.77929 8.93312 9.43092 10.93031 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.043636 B = 0.004109 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.523914 B = 6812.622697 C = 7193.615050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.226 3.774 3 H 0.057 0.943 4 C -0.519 4.519 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.455 5.455 13 C 0.032 3.968 14 C 0.405 3.595 15 N -0.301 5.301 16 N -0.237 5.237 17 C 0.195 3.805 18 C 0.079 3.921 19 C 0.006 3.994 20 N -0.262 5.262 21 N -0.067 5.067 22 N -0.394 5.394 23 H 0.444 0.556 24 N -0.488 5.488 25 C 0.078 3.922 26 H 0.023 0.977 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.264 0.736 30 H 0.036 0.964 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.205 0.795 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 -5.952 13.640 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.122 3.878 3 H 0.075 0.925 4 C -0.558 4.558 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.179 5.179 13 C -0.115 4.115 14 C 0.051 3.949 15 N -0.147 5.147 16 N -0.080 5.080 17 C -0.070 4.070 18 C -0.055 4.055 19 C -0.154 4.154 20 N -0.128 5.128 21 N -0.047 5.047 22 N -0.120 5.120 23 H 0.292 0.708 24 N -0.185 5.185 25 C -0.065 4.065 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.222 0.778 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.886 -4.935 14.548 15.631 hybrid contribution 0.572 -1.923 -1.866 2.740 sum 3.457 -6.859 12.681 14.826 Atomic orbital electron populations 1.22512 0.98913 0.98885 1.03080 1.19462 0.91330 0.94934 0.82026 0.92518 1.20983 1.36310 1.09001 0.89485 0.91717 1.24892 0.95080 0.94750 0.98965 1.69969 1.42175 1.15629 1.24068 0.86489 0.78652 0.79736 0.82563 1.20645 1.21125 1.19821 1.59356 1.56342 1.03173 0.99040 1.22449 0.97820 0.87432 1.03782 1.23288 0.90793 0.96339 0.84489 1.75060 1.16171 1.13817 1.09611 1.74422 1.16077 1.19988 0.97525 1.20829 1.00497 0.96090 0.89581 1.18984 1.05416 0.93395 0.87733 1.23773 1.03617 0.99749 0.88257 1.74977 1.11608 1.06354 1.19871 1.78210 1.18292 1.05725 1.02462 1.45625 1.41754 1.18261 1.06399 0.70794 1.46183 1.33773 1.30241 1.08352 1.22124 0.90908 0.92574 1.00937 0.95841 0.92621 0.90468 0.92614 0.94555 0.87939 0.93389 0.77821 0.89502 0.91780 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.46 37.16 0.31 -3.80 16 2 C 0.23 5.42 1.95 -68.86 -0.13 5.29 16 3 H 0.06 1.58 8.09 -51.93 -0.42 1.16 16 4 C -0.52 -13.13 7.84 -34.44 -0.27 -13.40 16 5 H 0.06 1.58 6.63 -52.49 -0.35 1.23 16 6 C 0.07 1.74 5.21 -17.82 -0.09 1.64 16 7 N -0.88 -24.34 11.96 55.43 0.66 -23.68 16 8 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.46 -8.94 4.74 -176.07 -0.84 -9.77 16 13 C 0.03 0.52 8.49 60.07 0.51 1.03 16 14 C 0.41 7.59 6.65 -318.86 -2.12 5.46 16 15 N -0.30 -6.26 8.97 30.32 0.27 -5.99 16 16 N -0.24 -4.39 12.23 32.53 0.40 -3.99 16 17 C 0.20 2.93 7.93 -153.77 -1.22 1.72 16 18 C 0.08 0.98 7.09 -82.37 -0.58 0.39 16 19 C 0.01 0.07 12.05 -17.31 -0.21 -0.14 16 20 N -0.26 -3.46 12.36 30.49 0.38 -3.08 16 21 N -0.07 -0.80 13.35 60.35 0.81 0.00 16 22 N -0.39 -3.91 6.86 33.31 0.23 -3.68 16 23 H 0.44 2.82 6.30 -190.34 -1.20 1.62 16 24 N -0.49 -7.02 3.24 -122.15 -0.40 -7.42 16 25 C 0.08 0.69 10.82 59.85 0.65 1.34 16 26 H 0.02 0.51 6.34 -51.93 -0.33 0.18 16 27 H 0.06 1.30 5.54 -51.93 -0.29 1.01 16 28 H 0.08 2.01 6.61 -51.93 -0.34 1.67 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.04 0.61 6.74 -51.93 -0.35 0.26 16 31 H 0.10 1.76 6.17 -51.93 -0.32 1.44 16 32 H 0.05 0.60 6.01 -51.93 -0.31 0.29 16 33 H 0.21 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.34 5.51 -51.93 -0.29 0.06 16 36 H 0.11 0.92 5.81 -51.93 -0.30 0.61 16 LS Contribution 295.33 15.07 4.45 4.45 Total: -1.00 -31.22 295.33 -6.69 -37.91 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.48 Total: 0.66 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -3.16 Total: -0.46 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 1.51 Total: -57.61 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.22 -6.69 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121358023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.760 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds