Wall clock time and date at job start Mon Mar 30 2020 01:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99589 * 2 1 4 4 H 1.48499 * 109.47012 * 270.77027 * 3 2 1 5 5 H 1.48491 * 109.47395 * 30.77493 * 3 2 1 6 6 H 1.48502 * 109.47011 * 150.77736 * 3 2 1 7 7 C 1.37871 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 358.02491 * 7 2 1 9 9 C 1.50701 * 120.00218 * 178.02569 * 7 2 1 10 10 C 1.53009 * 115.54697 * 86.39711 * 9 7 2 11 11 N 1.46498 * 109.47219 * 32.91730 * 10 9 7 12 12 C 1.34774 * 120.00037 * 185.70655 * 11 10 9 13 13 O 1.21279 * 119.99958 * 4.83818 * 12 11 10 14 14 C 1.50695 * 120.00122 * 184.85041 * 12 11 10 15 15 H 1.09002 * 110.46034 * 290.17371 * 14 12 11 16 16 C 1.54751 * 110.46054 * 52.56693 * 14 12 11 17 17 C 1.55980 * 104.46556 * 118.46669 * 16 14 12 18 18 H 1.08997 * 116.70586 * 161.21302 * 17 16 14 19 19 C 1.57793 * 105.00734 * 291.41800 * 17 16 14 20 20 C 1.52181 * 104.73647 * 69.70325 * 19 17 16 21 21 O 1.20761 * 127.32680 * 180.13989 * 20 19 17 22 22 C 1.53520 * 105.34138 * 0.11824 * 20 19 17 23 23 H 1.08998 * 115.83839 * 160.28976 * 22 20 19 24 24 C 1.56926 * 100.84116 * 34.04174 * 22 20 19 25 25 C 1.52994 * 117.52004 * 232.09666 * 9 7 2 26 26 C 1.52996 * 117.49998 * 300.72780 * 9 7 2 27 27 H 0.97002 * 120.00357 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.46794 * 272.91467 * 10 9 7 29 29 H 1.08998 * 109.47009 * 152.91427 * 10 9 7 30 30 H 0.97006 * 120.00071 * 5.69457 * 11 10 9 31 31 H 1.09004 * 110.47069 * 359.70604 * 16 14 12 32 32 H 1.08993 * 110.50414 * 237.25136 * 16 14 12 33 33 H 1.08997 * 110.07061 * 311.07761 * 19 17 16 34 34 H 1.09001 * 110.87346 * 188.73236 * 19 17 16 35 35 H 1.09002 * 112.08713 * 62.50173 * 24 22 20 36 36 H 1.09003 * 112.08381 * 189.10463 * 24 22 20 37 37 H 1.08997 * 117.50092 * 214.97470 * 25 9 7 38 38 H 1.09002 * 117.49789 * 359.97438 * 25 9 7 39 39 H 1.08996 * 117.49827 * 359.97222 * 26 9 7 40 40 H 1.08999 * 117.49717 * 144.99469 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4802 2.0559 -1.3999 5 1 1.4548 2.6479 0.7163 6 1 3.5547 1.4356 0.6835 7 6 2.0046 -1.1940 0.0005 8 1 1.4651 -2.1290 0.0332 9 6 3.5109 -1.1943 -0.0444 10 6 4.2115 -1.0834 1.3113 11 7 3.4060 -1.7556 2.3337 12 6 3.7691 -1.6878 3.6299 13 8 4.7109 -0.9990 3.9606 14 6 3.0049 -2.4680 4.6683 15 1 2.0095 -2.0458 4.8059 16 6 2.9065 -3.9579 4.2614 17 6 3.6421 -4.7232 5.4043 18 1 3.4302 -5.7885 5.4958 19 6 5.1617 -4.3274 5.2489 20 6 5.2234 -2.8619 5.6544 21 8 6.1987 -2.1503 5.6822 22 6 3.7820 -2.4806 6.0200 23 1 3.6687 -1.5925 6.6417 24 6 3.2681 -3.8281 6.6388 25 6 4.1858 -2.0468 -1.1207 26 6 4.1820 -0.5218 -1.2436 27 1 -0.4851 0.8400 0.0004 28 1 4.3292 -0.0323 1.5744 29 1 5.1923 -1.5554 1.2531 30 1 2.6112 -2.2494 2.0779 31 1 3.4063 -4.1264 3.3075 32 1 1.8638 -4.2699 4.2042 33 1 5.4754 -4.4475 4.2119 34 1 5.7890 -4.9295 5.9062 35 1 3.8264 -4.1080 7.5322 36 1 2.1938 -3.8113 6.8226 37 1 5.1289 -2.5287 -0.8631 38 1 3.5403 -2.6080 -1.7964 39 1 3.5341 -0.0795 -2.0003 40 1 5.1227 -0.0003 -1.0668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128506504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:16 Heat of formation + Delta-G solvation = -43.278652 kcal Electronic energy + Delta-G solvation = -22391.622070 eV Core-core repulsion = 19172.127026 eV Total energy + Delta-G solvation = -3219.495045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.10346 -38.54742 -37.26717 -36.86216 -33.42182 -32.22472 -30.50469 -28.90341 -27.40529 -26.32977 -25.21236 -22.25825 -21.70396 -20.34716 -19.80998 -19.32481 -18.28687 -16.87797 -16.62139 -16.30347 -15.68799 -15.17126 -14.92347 -14.61520 -14.03959 -13.86586 -13.54099 -13.27929 -12.95096 -12.72682 -12.63842 -12.39646 -12.22136 -11.90138 -11.60459 -11.35373 -11.24222 -11.15812 -10.87737 -10.67536 -10.59455 -10.54324 -10.22107 -9.70952 -9.34779 -9.16006 -9.07100 -8.72047 -8.64773 -8.13790 -6.24598 -4.30259 2.24101 3.13522 3.25011 3.35596 3.42452 3.73085 4.16936 4.24353 4.34834 4.36620 4.58072 4.81923 4.89291 5.03041 5.06443 5.14488 5.22127 5.26783 5.51992 5.59281 5.62764 5.70310 5.72450 5.80740 5.87971 5.95379 5.99166 6.03271 6.06173 6.11665 6.27530 6.42563 6.52957 6.68843 6.88091 7.04793 7.22238 7.62619 7.81232 8.27957 8.32464 8.74522 8.85844 9.39564 10.85685 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.005525 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.363177 B = 5066.921727 C = 5220.994982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.086 3.914 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.255 1.255 7 C -0.494 4.494 8 H 0.080 0.920 9 C -0.016 4.016 10 C 0.151 3.849 11 N -0.693 5.693 12 C 0.497 3.503 13 O -0.546 6.546 14 C -0.105 4.105 15 H 0.113 0.887 16 C -0.119 4.119 17 C -0.094 4.094 18 H 0.113 0.887 19 C -0.183 4.183 20 C 0.371 3.629 21 O -0.420 6.420 22 C -0.132 4.132 23 H 0.114 0.886 24 C -0.122 4.122 25 C -0.178 4.178 26 C -0.196 4.196 27 H 0.266 0.734 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.411 0.589 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 -10.256 9.999 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.118 4.118 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.532 4.532 8 H 0.097 0.903 9 C -0.017 4.017 10 C 0.027 3.973 11 N -0.344 5.344 12 C 0.282 3.718 13 O -0.425 6.425 14 C -0.127 4.127 15 H 0.131 0.869 16 C -0.156 4.156 17 C -0.112 4.112 18 H 0.131 0.869 19 C -0.220 4.220 20 C 0.243 3.757 21 O -0.290 6.290 22 C -0.151 4.151 23 H 0.132 0.868 24 C -0.159 4.159 25 C -0.215 4.215 26 C -0.234 4.234 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.249 0.751 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.311 -9.266 10.196 14.766 hybrid contribution -0.163 0.888 -0.401 0.988 sum 5.147 -8.378 9.795 13.879 Atomic orbital electron populations 1.69878 1.06353 1.27404 1.49142 1.24930 0.94513 0.99119 0.93241 0.86924 0.81001 0.83269 0.78494 1.20364 1.22057 1.17889 1.20120 0.86056 0.94444 1.52539 0.90255 1.19627 0.95439 1.00525 0.86106 1.21061 0.91685 0.96796 0.87801 1.45963 1.29892 1.53197 1.05339 1.20516 0.84923 0.82568 0.83827 1.90770 1.29736 1.41109 1.80866 1.22335 1.00651 0.96734 0.92941 0.86924 1.22783 1.02012 0.92054 0.98801 1.23859 0.93151 0.99039 0.95127 0.86896 1.23529 0.98137 0.96570 1.03800 1.25117 0.89386 0.88946 0.72218 1.90390 1.39322 1.58397 1.40884 1.23990 0.95459 0.99448 0.96238 0.86777 1.23592 1.01696 0.93467 0.97180 1.22898 1.00927 0.92779 1.04944 1.22951 1.01472 0.95280 1.03676 0.92396 0.91892 0.93814 0.75077 0.90326 0.89783 0.88826 0.88691 0.90569 0.89712 0.90903 0.89444 0.89235 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 2 C 0.09 2.31 5.47 -17.82 -0.10 2.21 16 3 Si 0.88 21.38 25.25 -169.99 -4.29 17.08 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.25 -6.12 5.23 56.52 0.30 -5.83 16 7 C -0.49 -12.47 7.80 -34.44 -0.27 -12.73 16 8 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 9 C -0.02 -0.34 1.24 -155.66 -0.19 -0.54 16 10 C 0.15 3.20 5.59 -4.04 -0.02 3.17 16 11 N -0.69 -13.40 4.85 -60.30 -0.29 -13.69 16 12 C 0.50 9.27 6.52 -10.99 -0.07 9.19 16 13 O -0.55 -12.31 13.78 -15.54 -0.21 -12.53 16 14 C -0.11 -1.43 3.13 -89.29 -0.28 -1.71 16 15 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 16 C -0.12 -1.26 5.60 -24.22 -0.14 -1.40 16 17 C -0.09 -0.81 5.30 -84.23 -0.45 -1.26 16 18 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 19 C -0.18 -2.02 6.19 -24.52 -0.15 -2.17 16 20 C 0.37 5.66 5.42 -26.88 -0.15 5.51 16 21 O -0.42 -8.32 16.74 -15.10 -0.25 -8.57 16 22 C -0.13 -1.68 4.51 -86.66 -0.39 -2.08 16 23 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 24 C -0.12 -1.05 6.41 -22.43 -0.14 -1.20 16 25 C -0.18 -3.42 9.88 -26.74 -0.26 -3.69 16 26 C -0.20 -4.04 7.69 -26.73 -0.21 -4.25 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.06 1.48 6.21 -51.93 -0.32 1.16 16 29 H 0.04 0.89 7.89 -51.93 -0.41 0.48 16 30 H 0.41 7.68 7.05 -40.82 -0.29 7.39 16 31 H 0.08 0.92 7.21 -51.93 -0.37 0.54 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 38 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.09 1.93 7.36 -51.93 -0.38 1.55 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -32.17 316.11 -8.41 -40.58 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.07 Total: 7.93 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.82 Total: -10.92 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.48 Total: -38.34 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.47 Total: -21.09 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.29 Total: 17.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.17 -8.41 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128506504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.700 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds