Wall clock time and date at job start Mon Mar 30 2020 01:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99589 * 2 1 4 4 H 1.48499 * 109.47012 * 270.77027 * 3 2 1 5 5 H 1.48491 * 109.47395 * 30.77493 * 3 2 1 6 6 H 1.48502 * 109.47011 * 150.77736 * 3 2 1 7 7 C 1.37871 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 358.02491 * 7 2 1 9 9 C 1.50701 * 120.00218 * 178.02569 * 7 2 1 10 10 C 1.53009 * 115.54697 * 86.39711 * 9 7 2 11 11 N 1.46498 * 109.47219 * 32.91730 * 10 9 7 12 12 C 1.34774 * 120.00037 * 185.70655 * 11 10 9 13 13 O 1.21279 * 119.99958 * 4.83818 * 12 11 10 14 14 C 1.50695 * 120.00122 * 184.85041 * 12 11 10 15 15 H 1.09002 * 110.46034 * 290.17371 * 14 12 11 16 16 C 1.54751 * 110.46054 * 52.56693 * 14 12 11 17 17 C 1.55980 * 104.46556 * 118.46669 * 16 14 12 18 18 H 1.08997 * 116.70586 * 161.21302 * 17 16 14 19 19 C 1.57793 * 105.00734 * 291.41800 * 17 16 14 20 20 C 1.52181 * 104.73647 * 69.70325 * 19 17 16 21 21 O 1.20761 * 127.32680 * 180.13989 * 20 19 17 22 22 C 1.53520 * 105.34138 * 0.11824 * 20 19 17 23 23 H 1.08998 * 115.83839 * 160.28976 * 22 20 19 24 24 C 1.56926 * 100.84116 * 34.04174 * 22 20 19 25 25 C 1.52994 * 117.52004 * 232.09666 * 9 7 2 26 26 C 1.52996 * 117.49998 * 300.72780 * 9 7 2 27 27 H 0.97002 * 120.00357 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.46794 * 272.91467 * 10 9 7 29 29 H 1.08998 * 109.47009 * 152.91427 * 10 9 7 30 30 H 0.97006 * 120.00071 * 5.69457 * 11 10 9 31 31 H 1.09004 * 110.47069 * 359.70604 * 16 14 12 32 32 H 1.08993 * 110.50414 * 237.25136 * 16 14 12 33 33 H 1.08997 * 110.07061 * 311.07761 * 19 17 16 34 34 H 1.09001 * 110.87346 * 188.73236 * 19 17 16 35 35 H 1.09002 * 112.08713 * 62.50173 * 24 22 20 36 36 H 1.09003 * 112.08381 * 189.10463 * 24 22 20 37 37 H 1.08997 * 117.50092 * 214.97470 * 25 9 7 38 38 H 1.09002 * 117.49789 * 359.97438 * 25 9 7 39 39 H 1.08996 * 117.49827 * 359.97222 * 26 9 7 40 40 H 1.08999 * 117.49717 * 144.99469 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4802 2.0559 -1.3999 5 1 1.4548 2.6479 0.7163 6 1 3.5547 1.4356 0.6835 7 6 2.0046 -1.1940 0.0005 8 1 1.4651 -2.1290 0.0332 9 6 3.5109 -1.1943 -0.0444 10 6 4.2115 -1.0834 1.3113 11 7 3.4060 -1.7556 2.3337 12 6 3.7691 -1.6878 3.6299 13 8 4.7109 -0.9990 3.9606 14 6 3.0049 -2.4680 4.6683 15 1 2.0095 -2.0458 4.8059 16 6 2.9065 -3.9579 4.2614 17 6 3.6421 -4.7232 5.4043 18 1 3.4302 -5.7885 5.4958 19 6 5.1617 -4.3274 5.2489 20 6 5.2234 -2.8619 5.6544 21 8 6.1987 -2.1503 5.6822 22 6 3.7820 -2.4806 6.0200 23 1 3.6687 -1.5925 6.6417 24 6 3.2681 -3.8281 6.6388 25 6 4.1858 -2.0468 -1.1207 26 6 4.1820 -0.5218 -1.2436 27 1 -0.4851 0.8400 0.0004 28 1 4.3292 -0.0323 1.5744 29 1 5.1923 -1.5554 1.2531 30 1 2.6112 -2.2494 2.0779 31 1 3.4063 -4.1264 3.3075 32 1 1.8638 -4.2699 4.2042 33 1 5.4754 -4.4475 4.2119 34 1 5.7890 -4.9295 5.9062 35 1 3.8264 -4.1080 7.5322 36 1 2.1938 -3.8113 6.8226 37 1 5.1289 -2.5287 -0.8631 38 1 3.5403 -2.6080 -1.7964 39 1 3.5341 -0.0795 -2.0003 40 1 5.1227 -0.0003 -1.0668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128506504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:15 Heat of formation + Delta-G solvation = -63.500822 kcal Electronic energy + Delta-G solvation = -22392.498970 eV Core-core repulsion = 19172.127026 eV Total energy + Delta-G solvation = -3220.371944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.20116 -40.03197 -38.72382 -38.25959 -35.02928 -34.27294 -31.57417 -29.80953 -28.56098 -27.89932 -26.92798 -23.46692 -23.26588 -21.36695 -21.08156 -20.95536 -19.50805 -18.47700 -17.86172 -17.62525 -17.10736 -16.78884 -16.38594 -16.08887 -15.56294 -15.22359 -14.83468 -14.69017 -14.44062 -14.27762 -14.12917 -13.90425 -13.42774 -13.13969 -12.96339 -12.62853 -12.43620 -12.29800 -12.20346 -12.08100 -12.00655 -11.65525 -11.59769 -11.43006 -11.06211 -10.79112 -10.65353 -10.38790 -10.21927 -9.79827 -8.34010 -6.38867 1.10132 1.27211 1.35137 1.44285 1.67402 2.31722 2.34107 3.02027 3.12645 3.21330 3.39574 3.45456 3.69777 3.98799 4.02689 4.04587 4.17851 4.25138 4.30760 4.38141 4.39527 4.55005 4.56436 4.75833 4.81368 4.81840 4.84448 4.93190 5.03942 5.08494 5.11169 5.17785 5.18759 5.25689 5.35873 5.45590 5.58761 5.71198 6.27072 6.67437 6.69599 6.76935 7.32498 7.35433 8.79191 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.005525 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.363177 B = 5066.921727 C = 5220.994982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.044 3.956 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.304 1.304 6 H -0.252 1.252 7 C -0.475 4.475 8 H 0.059 0.941 9 C -0.040 4.040 10 C 0.159 3.841 11 N -0.694 5.694 12 C 0.490 3.510 13 O -0.589 6.589 14 C -0.104 4.104 15 H 0.126 0.874 16 C -0.118 4.118 17 C -0.071 4.071 18 H 0.155 0.845 19 C -0.182 4.182 20 C 0.356 3.644 21 O -0.482 6.482 22 C -0.145 4.145 23 H 0.102 0.898 24 C -0.105 4.105 25 C -0.151 4.151 26 C -0.199 4.199 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.415 0.585 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 -12.785 10.636 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.156 4.156 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.231 1.231 6 H -0.176 1.176 7 C -0.512 4.512 8 H 0.077 0.923 9 C -0.041 4.041 10 C 0.034 3.966 11 N -0.345 5.345 12 C 0.277 3.723 13 O -0.471 6.471 14 C -0.125 4.125 15 H 0.144 0.856 16 C -0.156 4.156 17 C -0.089 4.089 18 H 0.172 0.828 19 C -0.219 4.219 20 C 0.232 3.768 21 O -0.356 6.356 22 C -0.164 4.164 23 H 0.120 0.880 24 C -0.142 4.142 25 C -0.188 4.188 26 C -0.237 4.237 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.253 0.747 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.251 -11.827 10.824 16.870 hybrid contribution -0.127 1.653 -0.613 1.767 sum 5.124 -10.174 10.211 15.298 Atomic orbital electron populations 1.69966 1.07521 1.27758 1.51836 1.25449 0.94845 1.01410 0.93862 0.86295 0.80053 0.80792 0.78700 1.19428 1.23106 1.17629 1.20235 0.87854 0.93123 1.50025 0.92340 1.19538 0.93665 1.03751 0.87120 1.20857 0.92461 0.95447 0.87820 1.45966 1.29832 1.53066 1.05597 1.21484 0.84525 0.82051 0.84208 1.90758 1.31845 1.43031 1.81461 1.22448 1.00207 0.98329 0.91491 0.85615 1.22861 1.03912 0.89743 0.99071 1.23974 0.90230 1.00893 0.93766 0.82753 1.23607 1.00959 0.93774 1.03603 1.26038 0.89545 0.90737 0.70463 1.90351 1.41334 1.60397 1.43548 1.24121 0.94297 1.01759 0.96262 0.88006 1.23626 1.03251 0.89865 0.97491 1.22943 1.01487 0.91990 1.02383 1.22993 1.01757 0.96721 1.02206 0.92593 0.94777 0.92908 0.74685 0.91532 0.87154 0.89705 0.86245 0.88856 0.87282 0.88114 0.89197 0.90312 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.89 13.96 21.44 0.30 -53.59 16 2 C 0.04 2.38 5.47 84.65 0.46 2.85 16 3 Si 0.91 44.29 25.25 68.60 1.73 46.02 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 6 H -0.25 -12.04 5.23 99.48 0.52 -11.52 16 7 C -0.47 -23.88 7.80 25.60 0.20 -23.68 16 8 H 0.06 3.15 8.06 -2.91 -0.02 3.12 16 9 C -0.04 -1.69 1.24 -52.93 -0.07 -1.76 16 10 C 0.16 6.71 5.59 86.38 0.48 7.19 16 11 N -0.69 -26.78 4.85 -463.07 -2.25 -29.03 16 12 C 0.49 18.40 6.52 87.66 0.57 18.98 16 13 O -0.59 -27.50 13.78 17.15 0.24 -27.27 16 14 C -0.10 -2.67 3.13 -9.93 -0.03 -2.71 16 15 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 16 C -0.12 -2.13 5.60 32.22 0.18 -1.95 16 17 C -0.07 -0.90 5.30 -6.65 -0.04 -0.93 16 18 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 19 C -0.18 -3.59 6.19 32.02 0.20 -3.39 16 20 C 0.36 10.79 5.42 30.50 0.17 10.96 16 21 O -0.48 -19.93 16.74 18.72 0.31 -19.62 16 22 C -0.14 -3.54 4.51 -8.23 -0.04 -3.57 16 23 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 24 C -0.11 -1.38 6.41 33.38 0.21 -1.17 16 25 C -0.15 -5.42 9.88 30.59 0.30 -5.11 16 26 C -0.20 -7.85 7.69 30.59 0.24 -7.62 16 27 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.03 1.63 6.21 -2.39 -0.01 1.61 16 29 H 0.05 2.11 7.89 -2.39 -0.02 2.09 16 30 H 0.41 15.33 7.05 -92.70 -0.65 14.68 16 31 H 0.07 1.39 7.21 -2.39 -0.02 1.38 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.86 7.92 -2.39 -0.02 1.84 16 34 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 3.09 8.04 -2.39 -0.02 3.07 16 38 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.08 3.28 7.36 -2.39 -0.02 3.27 16 40 H 0.09 3.26 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -73.50 316.11 3.38 -70.12 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.20 Total: 25.27 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 2.84 Total: -11.91 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -1.95 Total: -82.62 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: 0.55 Total: -46.88 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.73 Total: 46.02 kcal Total: -73.50 3.38 -70.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128506504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.618 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds