Wall clock time and date at job start Mon Mar 30 2020 01:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48494 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46828 * 299.99886 * 3 2 1 6 6 H 1.48499 * 109.47027 * 59.99721 * 3 2 1 7 7 C 1.39906 * 119.99293 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99571 * 175.54380 * 7 2 1 9 9 C 1.41155 * 120.00720 * 355.55656 * 7 2 1 10 10 C 1.40868 * 120.16304 * 35.00344 * 9 7 2 11 11 C 1.36375 * 119.82898 * 180.25634 * 10 9 7 12 12 C 1.39480 * 120.16649 * 359.48341 * 11 10 9 13 13 N 1.39236 * 119.83106 * 180.30100 * 12 11 10 14 14 C 1.34776 * 119.99753 * 324.70394 * 13 12 11 15 15 O 1.21273 * 120.00133 * 4.29686 * 14 13 12 16 16 C 1.50701 * 119.99732 * 184.29399 * 14 13 12 17 17 C 1.52999 * 109.47178 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47216 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47216 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47532 * 180.02562 * 19 18 17 21 21 O 1.42895 * 109.47676 * 180.02562 * 20 19 18 22 22 C 1.39475 * 120.33350 * 0.27156 * 12 11 10 23 23 C 1.36379 * 120.17254 * 359.97438 * 22 12 11 24 24 H 0.97006 * 119.99623 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.08833 * 0.03719 * 10 9 7 26 26 H 1.08000 * 119.91454 * 179.75739 * 11 10 9 27 27 H 0.97003 * 120.00025 * 144.71491 * 13 12 11 28 28 H 1.08997 * 109.47652 * 300.00347 * 16 14 13 29 29 H 1.08996 * 109.47376 * 60.00469 * 16 14 13 30 30 H 1.08997 * 109.47495 * 300.00371 * 17 16 14 31 31 H 1.09005 * 109.46934 * 60.00480 * 17 16 14 32 32 H 1.08997 * 109.47406 * 300.00688 * 18 17 16 33 33 H 1.09005 * 109.46562 * 60.00515 * 18 17 16 34 34 H 1.09006 * 109.46905 * 300.00588 * 19 18 17 35 35 H 1.09001 * 109.46878 * 59.99795 * 19 18 17 36 36 H 1.09005 * 109.46738 * 300.00322 * 20 19 18 37 37 H 1.09002 * 109.47071 * 59.99532 * 20 19 18 38 38 H 0.96697 * 114.00316 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.91806 * 179.97438 * 22 12 11 40 40 H 1.07995 * 120.08860 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7028 1.3462 0.0006 5 1 1.8841 2.3963 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0857 -1.2132 -0.0721 9 6 1.3055 -2.4323 0.0958 10 6 0.0437 -2.5721 -0.5145 11 6 -0.6315 -3.7527 -0.4138 12 6 -0.0709 -4.8235 0.2822 13 7 -0.7636 -6.0278 0.3754 14 6 -2.1076 -6.0260 0.4762 15 8 -2.7195 -4.9812 0.4075 16 6 -2.8500 -7.3224 0.6743 17 6 -4.3520 -7.0426 0.7559 18 6 -5.1058 -8.3588 0.9564 19 6 -6.6079 -8.0792 1.0373 20 6 -7.3617 -9.3953 1.2385 21 8 -8.7646 -9.1341 1.3135 22 6 1.1803 -4.6943 0.8848 23 6 1.8653 -3.5183 0.7969 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3896 -1.7453 -1.0579 26 1 -1.6008 -3.8601 -0.8779 27 1 -0.2789 -6.8680 0.3679 28 1 -2.6499 -7.9878 -0.1654 29 1 -2.5173 -7.7940 1.5989 30 1 -4.5526 -6.3770 1.5955 31 1 -4.6845 -6.5712 -0.1690 32 1 -4.9052 -9.0241 0.1166 33 1 -4.7734 -8.8306 1.8811 34 1 -6.8088 -7.4137 1.8770 35 1 -6.9399 -7.6075 0.1125 36 1 -7.1607 -10.0610 0.3990 37 1 -7.0295 -9.8666 2.1635 38 1 -9.3057 -9.9254 1.4405 39 1 1.6079 -5.5277 1.4224 40 1 2.8342 -3.4199 1.2636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135828177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:20 Heat of formation + Delta-G solvation = -113.946715 kcal Electronic energy + Delta-G solvation = -20167.698719 eV Core-core repulsion = 16945.139277 eV Total energy + Delta-G solvation = -3222.559442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19802 -39.14290 -38.17551 -36.35033 -35.93099 -34.67732 -32.42801 -31.40827 -30.74068 -27.87204 -26.37067 -23.74022 -23.12946 -22.38138 -21.87838 -20.92189 -19.23430 -18.45063 -18.16634 -17.61286 -17.17930 -16.95107 -16.31893 -15.77775 -15.27594 -15.24511 -15.07655 -14.70421 -14.47335 -13.96460 -13.75301 -13.60824 -13.39740 -13.32455 -12.87164 -12.67312 -12.62182 -12.32296 -12.17868 -12.07372 -11.78594 -11.75221 -11.66346 -11.46543 -11.20317 -10.85255 -10.72367 -10.42841 -9.45862 -8.73753 -8.50208 -6.33330 0.81677 1.12282 1.37917 1.43809 1.54283 1.85661 2.22944 2.41542 2.81670 3.33971 3.67823 3.84195 3.98089 4.11620 4.21572 4.24987 4.43768 4.47076 4.48830 4.67411 4.67979 4.79573 4.85046 4.97408 5.02684 5.04436 5.12882 5.19607 5.23915 5.34685 5.39613 5.44166 5.49443 5.71005 5.88003 6.09056 6.15362 6.35659 6.70676 6.77848 6.92626 6.95741 7.02496 7.48612 8.43108 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034105 B = 0.002689 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.794525 B =10408.628464 C =11094.944185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.019 3.981 3 Si 0.992 3.008 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.080 0.920 9 C 0.062 3.938 10 C -0.169 4.169 11 C -0.111 4.111 12 C 0.021 3.979 13 N -0.647 5.647 14 C 0.488 3.512 15 O -0.584 6.584 16 C -0.122 4.122 17 C -0.105 4.105 18 C -0.103 4.103 19 C -0.127 4.127 20 C 0.075 3.925 21 O -0.604 6.604 22 C -0.109 4.109 23 C -0.209 4.209 24 H 0.281 0.719 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.420 0.580 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.397 0.603 39 H 0.138 0.862 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 -20.171 2.458 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.191 4.191 3 Si 0.813 3.187 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.060 3.940 10 C -0.190 4.190 11 C -0.132 4.132 12 C -0.073 4.073 13 N -0.293 5.293 14 C 0.278 3.722 15 O -0.464 6.464 16 C -0.161 4.161 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.165 4.165 20 C -0.002 4.002 21 O -0.413 6.413 22 C -0.129 4.129 23 C -0.229 4.229 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.258 0.742 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.247 0.753 39 H 0.156 0.844 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.759 -18.727 2.341 20.405 hybrid contribution 0.071 0.471 -0.024 0.477 sum -7.688 -18.256 2.317 19.944 Atomic orbital electron populations 1.69931 1.08983 1.29709 1.39098 1.26886 0.95710 1.04852 0.91695 0.85002 0.79265 0.75853 0.78557 1.17610 1.19284 1.19492 1.19790 0.94982 0.91122 1.46783 0.90190 1.18084 0.92681 0.93378 0.89842 1.21177 0.98035 0.96347 1.03416 1.20673 0.98648 0.94190 0.99655 1.17404 0.95113 0.88139 1.06606 1.43008 1.06683 1.07579 1.71996 1.21877 0.82247 0.92751 0.75331 1.90708 1.68331 1.36213 1.51124 1.21694 0.94785 0.92808 1.06809 1.21293 0.93260 0.98053 1.01676 1.21416 0.92347 0.96356 1.03870 1.21563 0.95511 0.97566 1.01875 1.22268 0.80322 0.96669 1.00969 1.86447 1.18926 1.39262 1.96617 1.20472 0.94364 0.98106 0.99985 1.20975 1.01869 0.94759 1.05270 0.90821 0.87942 0.88708 0.74162 0.85684 0.85814 0.93526 0.93347 0.89665 0.89761 0.92868 0.92781 0.92067 0.92105 0.75296 0.84390 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.43 10.61 21.82 0.23 -48.19 16 2 C 0.02 1.04 5.42 85.24 0.46 1.50 16 3 Si 0.99 40.56 29.56 68.60 2.03 42.59 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.50 -27.69 9.02 23.39 0.21 -27.47 16 8 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 9 C 0.06 3.51 5.55 -21.28 -0.12 3.39 16 10 C -0.17 -9.78 8.61 22.48 0.19 -9.59 16 11 C -0.11 -5.86 8.61 22.13 0.19 -5.66 16 12 C 0.02 0.92 6.31 38.56 0.24 1.17 16 13 N -0.65 -20.81 5.30 -303.13 -1.61 -22.42 16 14 C 0.49 16.11 7.66 87.66 0.67 16.78 16 15 O -0.58 -26.47 13.40 -3.01 -0.04 -26.51 16 16 C -0.12 -2.30 5.70 29.85 0.17 -2.13 16 17 C -0.10 -2.26 4.50 30.59 0.14 -2.12 16 18 C -0.10 -1.42 5.21 30.59 0.16 -1.26 16 19 C -0.13 -2.23 5.58 30.59 0.17 -2.05 16 20 C 0.07 0.99 7.05 71.98 0.51 1.50 16 21 O -0.60 -9.94 13.66 -148.98 -2.03 -11.98 16 22 C -0.11 -4.57 9.90 22.13 0.22 -4.35 16 23 C -0.21 -10.09 9.74 22.48 0.22 -9.87 16 24 H 0.28 14.69 8.30 -92.70 -0.77 13.92 16 25 H 0.10 6.35 6.15 -2.91 -0.02 6.33 16 26 H 0.09 5.12 6.22 -2.91 -0.02 5.11 16 27 H 0.42 9.16 8.82 -92.71 -0.82 8.34 16 28 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 31 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.40 2.52 9.12 -74.06 -0.68 1.84 16 39 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -77.49 336.63 1.57 -75.92 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.44 Total: 30.76 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 3.44 Total: -40.17 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.38 Total: -70.61 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -2.08 Total: -38.49 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -77.49 1.57 -75.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135828177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.026 kcal (2) G-P(sol) polarization free energy of solvation -77.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds