Wall clock time and date at job start Mon Mar 30 2020 01:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47279 * 239.99851 * 3 2 1 5 5 H 1.48495 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47083 * 119.99927 * 3 2 1 7 7 C 1.37885 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99585 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00321 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.50270 * 59.91910 * 9 7 2 11 11 C 1.53123 * 109.50314 * 299.80776 * 9 7 2 12 12 C 1.53124 * 109.16220 * 182.40363 * 11 9 7 13 13 C 1.53035 * 109.27475 * 57.64849 * 12 11 9 14 14 N 1.46846 * 109.52744 * 300.82106 * 13 12 11 15 15 C 1.46898 * 111.00056 * 185.84176 * 14 13 12 16 16 C 1.50705 * 109.47151 * 66.04430 * 15 14 13 17 17 C 1.38151 * 120.00086 * 259.72193 * 16 15 14 18 18 C 1.38671 * 119.99733 * 179.77015 * 17 16 15 19 19 O 1.35983 * 120.00187 * 180.25360 * 18 17 16 20 20 C 1.38720 * 120.00194 * 0.53240 * 18 17 16 21 21 C 1.38109 * 119.99872 * 359.72475 * 20 18 17 22 22 C 1.38669 * 119.99524 * 80.00167 * 16 15 14 23 23 O 1.35983 * 120.00535 * 359.97438 * 22 16 15 24 24 C 1.46846 * 111.19780 * 61.74478 * 14 13 12 25 25 H 0.96994 * 120.00034 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.51952 * 302.30623 * 11 9 7 27 27 H 1.08995 * 109.52691 * 62.49592 * 11 9 7 28 28 H 1.08993 * 109.50112 * 297.71243 * 12 11 9 29 29 H 1.08992 * 109.50394 * 177.58991 * 12 11 9 30 30 H 1.09008 * 109.45841 * 180.80263 * 13 12 11 31 31 H 1.09003 * 109.46290 * 60.84246 * 13 12 11 32 32 H 1.08996 * 109.47292 * 186.04689 * 15 14 13 33 33 H 1.09004 * 109.47431 * 306.04954 * 15 14 13 34 34 H 1.07995 * 120.00126 * 0.02562 * 17 16 15 35 35 H 0.96699 * 114.00485 * 270.27657 * 19 18 17 36 36 H 1.08002 * 120.00396 * 179.70469 * 20 18 17 37 37 H 1.08000 * 120.00353 * 179.97438 * 21 20 18 38 38 H 0.96700 * 114.00500 * 89.99471 * 23 22 16 39 39 H 1.09009 * 109.46169 * 58.27021 * 24 14 13 40 40 H 1.08995 * 109.46611 * 178.23876 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6228 -2.5567 -0.8894 11 6 0.3746 -2.5835 1.2522 12 6 -0.3410 -3.9370 1.2748 13 6 0.6990 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0201 15 6 2.4282 -6.0739 -0.1194 16 6 1.6332 -7.3340 -0.3459 17 6 1.4036 -8.2038 0.7026 18 6 0.6680 -9.3609 0.4952 19 8 0.4375 -10.2144 1.5283 20 6 0.1721 -9.6506 -0.7676 21 6 0.4062 -8.7837 -1.8169 22 6 1.1371 -7.6233 -1.6081 23 8 1.3676 -6.7698 -2.6414 24 6 2.2449 -3.6630 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 0.9988 -2.4866 2.1406 27 1 -0.3633 -1.7815 1.2351 28 1 -0.9947 -4.0175 0.4064 29 1 -0.9334 -4.0203 2.1859 30 1 0.1922 -6.0241 1.2387 31 1 1.3437 -4.9862 2.1131 32 1 3.0910 -5.9050 -0.9680 33 1 3.0208 -6.1768 0.7896 34 1 1.7934 -7.9805 1.6847 35 1 1.1155 -10.8957 1.6344 36 1 -0.3967 -10.5541 -0.9302 37 1 0.0205 -9.0094 -2.8002 38 1 2.1787 -6.9574 -3.1332 39 1 2.8823 -3.5966 0.8806 40 1 2.8609 -3.6140 -0.8990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141159380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:22 Heat of formation + Delta-G solvation = -87.996827 kcal Electronic energy + Delta-G solvation = -21760.344741 eV Core-core repulsion = 18538.910571 eV Total energy + Delta-G solvation = -3221.434170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20206 -39.63589 -38.73165 -36.51936 -35.60797 -33.87844 -32.08228 -31.47472 -29.69175 -27.11817 -26.90970 -23.88860 -23.58191 -23.24461 -22.00849 -20.36079 -19.27903 -18.92176 -18.37646 -17.26809 -16.93525 -16.57046 -16.25933 -16.03542 -15.54798 -15.15457 -14.93802 -14.72616 -14.43139 -14.22188 -13.85486 -13.71715 -13.43023 -13.30311 -12.91166 -12.80323 -12.63402 -12.51547 -12.27669 -11.86118 -11.80650 -11.73212 -11.42735 -11.17798 -10.85501 -10.67436 -10.37264 -9.89496 -9.30468 -9.07989 -8.06375 -6.21192 0.20818 0.28965 1.42358 1.44136 1.51723 2.43096 2.52052 3.15343 3.20430 3.36990 3.40456 3.78672 3.91939 4.16742 4.19044 4.25220 4.37923 4.43132 4.56558 4.59817 4.64179 4.75273 4.87212 4.90443 4.95976 4.99676 5.07690 5.17340 5.22396 5.36811 5.42037 5.50199 5.56038 5.63652 5.77323 5.96565 6.12639 6.21330 6.35331 6.46641 6.87458 6.91626 7.00474 7.46714 8.98390 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.004064 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.600488 B = 6888.826150 C = 7215.076193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.054 3.946 10 H -0.008 1.008 11 C -0.102 4.102 12 C -0.111 4.111 13 C 0.070 3.930 14 N -0.537 5.537 15 C 0.101 3.899 16 C -0.096 4.096 17 C -0.131 4.131 18 C 0.091 3.909 19 O -0.507 6.507 20 C -0.130 4.130 21 C -0.135 4.135 22 C 0.109 3.891 23 O -0.501 6.501 24 C 0.084 3.916 25 H 0.260 0.740 26 H 0.025 0.975 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.133 0.867 35 H 0.409 0.591 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.402 0.598 39 H 0.017 0.983 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.514 -21.422 -0.494 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.010 0.990 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.058 4.058 14 N -0.262 5.262 15 C -0.026 4.026 16 C -0.097 4.097 17 C -0.151 4.151 18 C 0.046 3.954 19 O -0.320 6.320 20 C -0.148 4.148 21 C -0.154 4.154 22 C 0.064 3.936 23 O -0.313 6.313 24 C -0.043 4.043 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.151 0.849 35 H 0.268 0.732 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.260 0.740 39 H 0.036 0.964 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.050 -20.704 -0.631 20.937 hybrid contribution 1.554 0.812 0.425 1.804 sum 4.604 -19.892 -0.206 20.419 Atomic orbital electron populations 1.70048 1.07318 1.27125 1.51157 1.25757 0.95640 1.02450 0.94732 0.85640 0.78365 0.78939 0.78863 1.19541 1.21041 1.19573 1.21496 0.93046 0.92046 1.50925 0.92784 1.18563 0.92984 0.91482 0.93459 0.98953 1.21450 0.99102 0.95837 0.97595 1.21575 0.97579 0.95251 1.00442 1.21966 0.95228 0.98492 0.90075 1.61883 1.24583 1.01574 1.38135 1.20872 0.92995 0.87535 1.01196 1.20037 1.00068 0.95957 0.93614 1.21333 0.99705 0.95055 0.98967 1.18442 0.97992 0.91540 0.87410 1.84829 1.52523 1.45574 1.49091 1.21506 1.01014 1.01173 0.91131 1.21515 0.99952 0.93008 1.00883 1.18483 0.97980 0.89597 0.87554 1.84950 1.47942 1.54207 1.44237 1.21971 0.95240 0.88491 0.98588 0.93107 0.95653 0.92460 0.93815 0.91480 0.90795 0.95406 0.89563 0.93794 0.84945 0.73181 0.82987 0.83369 0.73963 0.96431 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.86 11.36 21.45 0.24 -54.61 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -30.49 8.56 25.60 0.22 -30.27 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.05 2.87 2.26 -11.49 -0.03 2.84 16 10 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 11 C -0.10 -5.13 5.03 30.68 0.15 -4.97 16 12 C -0.11 -4.66 6.09 30.65 0.19 -4.47 16 13 C 0.07 2.59 5.26 86.33 0.45 3.04 16 14 N -0.54 -20.45 4.65 -900.92 -4.19 -24.63 16 15 C 0.10 2.98 4.76 85.56 0.41 3.38 16 16 C -0.10 -2.52 4.59 -19.78 -0.09 -2.61 16 17 C -0.13 -3.06 8.52 22.35 0.19 -2.87 16 18 C 0.09 1.88 6.70 22.49 0.15 2.03 16 19 O -0.51 -8.85 13.50 -93.36 -1.26 -10.11 16 20 C -0.13 -2.45 9.98 22.35 0.22 -2.23 16 21 C -0.14 -2.82 9.98 22.36 0.22 -2.59 16 22 C 0.11 2.78 6.68 22.49 0.15 2.93 16 23 O -0.50 -13.16 12.73 -93.36 -1.19 -14.35 16 24 C 0.08 3.69 4.68 86.32 0.40 4.10 16 25 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 3.25 6.17 -2.39 -0.01 3.24 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 2.52 6.33 -2.38 -0.02 2.51 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 2.38 7.69 -2.39 -0.02 2.36 16 33 H 0.04 1.20 7.98 -2.38 -0.02 1.18 16 34 H 0.13 2.89 8.03 -2.91 -0.02 2.86 16 35 H 0.41 2.75 9.06 -74.06 -0.67 2.08 16 36 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.40 6.30 9.06 -74.06 -0.67 5.63 16 39 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.06 2.57 8.01 -2.39 -0.02 2.55 16 Total: -1.00 -70.58 324.86 -1.56 -72.14 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -0.29 Total: 15.63 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 3.10 Total: -30.52 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -3.94 Total: -79.25 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -2.45 Total: -24.46 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.58 -1.56 -72.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141159380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.857 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds