Wall clock time and date at job start Mon Mar 30 2020 01:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47351 * 179.97438 * 11 10 9 13 13 C 1.39938 * 120.00337 * 180.02562 * 12 11 10 14 14 C 1.38884 * 120.08475 * 0.02562 * 13 12 11 15 15 C 1.37920 * 119.87644 * 180.02562 * 14 13 12 16 16 C 1.39134 * 120.32059 * 359.91423 * 15 14 13 17 17 C 1.38362 * 119.81634 * 359.96534 * 16 15 14 18 18 C 1.38479 * 119.89417 * 359.89122 * 17 16 15 19 19 C 1.50780 * 121.40659 * 180.26386 * 17 16 15 20 20 H 1.09000 * 109.39300 * 102.22009 * 19 17 16 21 21 O 1.42898 * 109.43780 * 222.10373 * 19 17 16 22 22 C 1.53067 * 109.69830 * 342.17788 * 19 17 16 23 23 C 1.53409 * 108.29133 * 48.23812 * 22 19 17 24 24 O 1.35984 * 118.41276 * 179.78784 * 16 15 14 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 1.09000 * 109.47250 * 300.00684 * 11 10 9 31 31 H 1.09007 * 109.46897 * 59.99806 * 11 10 9 32 32 H 0.97003 * 119.99825 * 0.02562 * 12 11 10 33 33 H 1.08001 * 120.06554 * 0.04841 * 14 13 12 34 34 H 1.07999 * 119.84238 * 179.97438 * 15 14 13 35 35 H 1.08000 * 119.86756 * 180.14253 * 18 17 16 36 36 H 0.96702 * 114.00020 * 180.23343 * 21 19 17 37 37 H 1.09002 * 109.69648 * 288.53920 * 22 19 17 38 38 H 1.08997 * 109.70218 * 167.93676 * 22 19 17 39 39 H 1.09000 * 109.68708 * 175.53868 * 23 22 19 40 40 H 1.09004 * 109.71478 * 54.99856 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4806 -4.9870 0.0257 12 7 2.4326 -6.1004 0.0308 13 6 1.9662 -7.4198 0.0375 14 6 0.6011 -7.6757 0.0388 15 6 0.1462 -8.9777 0.0459 16 6 1.0484 -10.0369 0.0500 17 6 2.4084 -9.7823 0.0462 18 6 2.8658 -8.4753 0.0361 19 6 3.4175 -10.9027 0.0446 20 1 3.8188 -11.0268 -0.9612 21 8 4.4810 -10.5861 0.9450 22 6 2.7446 -12.2038 0.4886 23 6 1.4408 -12.3662 -0.3034 24 8 0.5574 -11.3050 0.0614 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.8541 -5.0399 0.9162 31 1 0.8536 -5.0496 -0.8638 32 1 3.3862 -5.9232 0.0296 33 1 -0.1029 -6.8567 0.0338 34 1 -0.9154 -9.1761 0.0473 35 1 3.9274 -8.2771 0.0308 36 1 5.1704 -11.2625 0.9927 37 1 2.5234 -12.1578 1.5549 38 1 3.4050 -13.0469 0.2858 39 1 0.9819 -13.3251 -0.0627 40 1 1.6511 -12.3179 -1.3719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168431164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:15 Heat of formation + Delta-G solvation = -81.159519 kcal Electronic energy + Delta-G solvation = -20602.616933 eV Core-core repulsion = 17381.479250 eV Total energy + Delta-G solvation = -3221.137682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79086 -38.29901 -37.26897 -35.64789 -33.69455 -32.71554 -31.41967 -30.58862 -28.65522 -25.91228 -25.15989 -23.75164 -22.63319 -22.39144 -20.59855 -19.87354 -17.87915 -17.79426 -17.02283 -16.60889 -16.54538 -15.38175 -14.88523 -14.84451 -14.62809 -14.34112 -13.78962 -13.73526 -13.57509 -13.23950 -12.95830 -12.82313 -12.74520 -12.05908 -11.91135 -11.57395 -11.35436 -11.18573 -10.82985 -10.77840 -10.68984 -10.38422 -10.15386 -9.99810 -9.85838 -9.30335 -8.83129 -8.58293 -8.34488 -6.98449 -6.37936 -4.07402 1.31549 1.65632 3.21963 3.43226 3.45182 3.63891 3.67324 3.74128 4.00742 4.31317 4.35485 4.51474 4.53909 4.80576 4.99010 5.06238 5.12604 5.22600 5.39334 5.41016 5.44689 5.53197 5.65153 5.65953 5.74241 6.00121 6.01658 6.06516 6.42348 6.44806 6.47909 6.50920 6.70629 6.83270 7.27958 7.34004 7.37713 7.47527 7.58876 7.96696 8.18496 8.43959 8.86482 9.64918 11.02892 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042777 B = 0.002695 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.401353 B =10388.105599 C =10963.942561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.048 0.952 9 C 0.011 3.989 10 C -0.113 4.113 11 C 0.122 3.878 12 N -0.745 5.745 13 C 0.194 3.806 14 C -0.159 4.159 15 C -0.100 4.100 16 C 0.070 3.930 17 C -0.116 4.116 18 C -0.144 4.144 19 C 0.153 3.847 20 H 0.067 0.933 21 O -0.554 6.554 22 C -0.193 4.193 23 C 0.067 3.933 24 O -0.320 6.320 25 H 0.269 0.731 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.398 0.602 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.377 0.623 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -26.523 -0.919 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.067 0.933 9 C -0.026 4.026 10 C -0.151 4.151 11 C -0.002 4.002 12 N -0.374 5.374 13 C 0.090 3.910 14 C -0.181 4.181 15 C -0.119 4.119 16 C 0.024 3.976 17 C -0.118 4.118 18 C -0.167 4.167 19 C 0.094 3.906 20 H 0.084 0.916 21 O -0.359 6.359 22 C -0.231 4.231 23 C -0.008 4.008 24 O -0.235 6.235 25 H 0.079 0.921 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.232 0.768 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.224 0.776 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.874 -24.233 -0.786 24.730 hybrid contribution 1.194 -2.210 -0.110 2.515 sum 6.068 -26.443 -0.896 27.145 Atomic orbital electron populations 1.70788 1.06882 1.30616 1.46571 1.25868 0.96560 1.02784 0.93742 0.83540 0.74890 0.75321 0.76510 1.20725 1.21438 1.21445 1.22027 0.94275 0.91977 1.55882 0.93329 1.19154 0.94499 0.92770 0.96201 1.21700 0.99464 0.92806 1.01123 1.21576 0.92246 0.85937 1.00437 1.44928 1.08794 1.01884 1.81819 1.17808 0.92670 0.85136 0.95400 1.20561 0.93933 0.96397 1.07250 1.20290 0.99022 0.90056 1.02533 1.18326 0.90755 0.83932 1.04573 1.19152 0.91766 0.94320 1.06541 1.20233 0.99060 0.90254 1.07173 1.20357 0.86511 0.91150 0.92566 0.91579 1.86633 1.34822 1.48772 1.65701 1.22978 0.98640 0.98673 1.02767 1.22798 0.89694 0.89960 0.98382 1.85985 1.39497 1.12926 1.85085 0.92083 0.97257 0.97263 0.92637 0.92621 0.92717 0.92730 0.76814 0.85156 0.85267 0.85739 0.77557 0.89506 0.89857 0.87625 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.65 55.43 0.76 -27.37 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 3 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.60 -17.27 9.11 -34.44 -0.31 -17.58 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 9 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 10 C -0.11 -2.28 5.27 -26.73 -0.14 -2.42 16 11 C 0.12 2.07 4.92 -4.05 -0.02 2.05 16 12 N -0.75 -11.32 5.74 -58.63 -0.34 -11.66 16 13 C 0.19 2.89 6.65 -83.75 -0.56 2.34 16 14 C -0.16 -2.28 9.31 -39.46 -0.37 -2.65 16 15 C -0.10 -1.35 9.93 -39.37 -0.39 -1.74 16 16 C 0.07 0.93 6.47 -39.20 -0.25 0.68 16 17 C -0.12 -1.51 5.58 -104.45 -0.58 -2.09 16 18 C -0.14 -2.01 9.15 -39.33 -0.36 -2.37 16 19 C 0.15 1.46 3.58 -27.81 -0.10 1.36 16 20 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 21 O -0.55 -5.34 12.62 -35.23 -0.44 -5.79 16 22 C -0.19 -1.42 5.81 -26.48 -0.15 -1.57 16 23 C 0.07 0.53 7.03 37.37 0.26 0.79 16 24 O -0.32 -3.84 10.27 -19.69 -0.20 -4.05 16 25 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 26 H 0.01 0.24 8.01 -51.92 -0.42 -0.17 16 27 H 0.01 0.24 8.00 -51.93 -0.42 -0.18 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.94 7.96 -51.93 -0.41 0.53 16 31 H 0.05 0.93 7.95 -51.93 -0.41 0.52 16 32 H 0.40 5.57 8.49 -40.82 -0.35 5.22 16 33 H 0.13 1.81 6.75 -52.49 -0.35 1.45 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.12 1.65 7.76 -52.49 -0.41 1.24 16 36 H 0.38 1.72 9.08 45.56 0.41 2.13 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -33.39 330.08 -8.76 -42.15 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.23 Total: 4.13 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -3.19 Total: -22.71 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.42 Total: -39.03 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.65 Total: -9.83 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.39 -8.76 -42.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.008 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds