Wall clock time and date at job start Mon Mar 30 2020 01:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47351 * 179.97438 * 11 10 9 13 13 C 1.39938 * 120.00337 * 180.02562 * 12 11 10 14 14 C 1.38884 * 120.08475 * 0.02562 * 13 12 11 15 15 C 1.37920 * 119.87644 * 180.02562 * 14 13 12 16 16 C 1.39134 * 120.32059 * 359.91423 * 15 14 13 17 17 C 1.38362 * 119.81634 * 359.96534 * 16 15 14 18 18 C 1.38479 * 119.89417 * 359.89122 * 17 16 15 19 19 C 1.50780 * 121.40659 * 180.26386 * 17 16 15 20 20 H 1.09000 * 109.39300 * 102.22009 * 19 17 16 21 21 O 1.42898 * 109.43780 * 222.10373 * 19 17 16 22 22 C 1.53067 * 109.69830 * 342.17788 * 19 17 16 23 23 C 1.53409 * 108.29133 * 48.23812 * 22 19 17 24 24 O 1.35984 * 118.41276 * 179.78784 * 16 15 14 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 1.09000 * 109.47250 * 300.00684 * 11 10 9 31 31 H 1.09007 * 109.46897 * 59.99806 * 11 10 9 32 32 H 0.97003 * 119.99825 * 0.02562 * 12 11 10 33 33 H 1.08001 * 120.06554 * 0.04841 * 14 13 12 34 34 H 1.07999 * 119.84238 * 179.97438 * 15 14 13 35 35 H 1.08000 * 119.86756 * 180.14253 * 18 17 16 36 36 H 0.96702 * 114.00020 * 180.23343 * 21 19 17 37 37 H 1.09002 * 109.69648 * 288.53920 * 22 19 17 38 38 H 1.08997 * 109.70218 * 167.93676 * 22 19 17 39 39 H 1.09000 * 109.68708 * 175.53868 * 23 22 19 40 40 H 1.09004 * 109.71478 * 54.99856 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4806 -4.9870 0.0257 12 7 2.4326 -6.1004 0.0308 13 6 1.9662 -7.4198 0.0375 14 6 0.6011 -7.6757 0.0388 15 6 0.1462 -8.9777 0.0459 16 6 1.0484 -10.0369 0.0500 17 6 2.4084 -9.7823 0.0462 18 6 2.8658 -8.4753 0.0361 19 6 3.4175 -10.9027 0.0446 20 1 3.8188 -11.0268 -0.9612 21 8 4.4810 -10.5861 0.9450 22 6 2.7446 -12.2038 0.4886 23 6 1.4408 -12.3662 -0.3034 24 8 0.5574 -11.3050 0.0614 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.8541 -5.0399 0.9162 31 1 0.8536 -5.0496 -0.8638 32 1 3.3862 -5.9232 0.0296 33 1 -0.1029 -6.8567 0.0338 34 1 -0.9154 -9.1761 0.0473 35 1 3.9274 -8.2771 0.0308 36 1 5.1704 -11.2625 0.9927 37 1 2.5234 -12.1578 1.5549 38 1 3.4050 -13.0469 0.2858 39 1 0.9819 -13.3251 -0.0627 40 1 1.6511 -12.3179 -1.3719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168431164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:15 Heat of formation + Delta-G solvation = -104.502087 kcal Electronic energy + Delta-G solvation = -20603.629142 eV Core-core repulsion = 17381.479250 eV Total energy + Delta-G solvation = -3222.149892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67593 -39.35290 -37.99887 -37.10339 -35.50948 -33.47067 -33.11744 -31.49290 -29.97103 -27.55314 -25.98152 -25.18809 -23.87452 -23.59711 -22.24576 -20.75535 -18.95705 -18.74565 -18.56064 -17.78425 -17.59672 -16.44169 -16.16961 -15.89343 -15.65425 -15.62987 -15.10563 -15.00393 -14.72717 -14.43858 -14.32310 -14.04822 -13.84894 -13.45684 -13.22945 -12.82785 -12.60555 -12.43694 -12.17585 -12.04489 -11.98963 -11.82430 -11.73068 -11.52147 -11.07717 -10.71454 -10.55720 -10.39505 -9.83556 -8.70517 -8.09812 -6.41334 0.28276 0.60159 1.52310 1.60755 1.80181 2.37922 2.49955 2.58039 2.77068 3.14494 3.27654 3.63430 3.69816 3.79371 4.02603 4.08065 4.11043 4.15724 4.30957 4.42823 4.46513 4.49968 4.59381 4.66217 4.75740 4.80416 4.88627 4.92644 4.98227 5.08377 5.10455 5.34816 5.35638 5.44652 5.46848 5.64527 5.96537 6.16714 6.28909 6.55740 6.58113 6.82843 6.86107 7.40725 8.70807 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042777 B = 0.002695 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.401353 B =10388.105599 C =10963.942561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.041 4.041 3 Si 1.118 2.882 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.621 4.621 8 H 0.052 0.948 9 C 0.011 3.989 10 C -0.097 4.097 11 C 0.138 3.862 12 N -0.745 5.745 13 C 0.175 3.825 14 C -0.172 4.172 15 C -0.110 4.110 16 C 0.068 3.932 17 C -0.126 4.126 18 C -0.149 4.149 19 C 0.151 3.849 20 H 0.084 0.916 21 O -0.574 6.574 22 C -0.183 4.183 23 C 0.056 3.944 24 O -0.335 6.335 25 H 0.256 0.744 26 H -0.008 1.008 27 H -0.007 1.007 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.403 0.597 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.460 -28.333 -1.139 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.939 3.061 4 H -0.209 1.209 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.659 4.659 8 H 0.070 0.930 9 C -0.027 4.027 10 C -0.135 4.135 11 C 0.014 3.986 12 N -0.376 5.376 13 C 0.072 3.928 14 C -0.194 4.194 15 C -0.129 4.129 16 C 0.022 3.978 17 C -0.128 4.128 18 C -0.171 4.171 19 C 0.092 3.908 20 H 0.102 0.898 21 O -0.383 6.383 22 C -0.221 4.221 23 C -0.019 4.019 24 O -0.250 6.250 25 H 0.066 0.934 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.238 0.762 33 H 0.146 0.854 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.575 -26.113 -1.006 26.947 hybrid contribution 0.668 -1.817 -0.041 1.936 sum 7.243 -27.930 -1.047 28.873 Atomic orbital electron populations 1.70920 1.07977 1.29942 1.48726 1.27473 0.96630 1.06974 0.92696 0.82926 0.74122 0.70991 0.78063 1.20886 1.19399 1.19302 1.22496 0.94780 0.93425 1.55203 0.92982 1.19095 0.95024 0.94068 0.94524 1.21441 0.98299 0.92459 1.01324 1.21203 0.91997 0.85188 1.00228 1.44685 1.08615 1.01580 1.82717 1.17955 0.93144 0.85008 0.96646 1.20645 0.93915 0.96923 1.07932 1.20499 0.99955 0.89977 1.02492 1.18477 0.90978 0.84685 1.03652 1.19613 0.92672 0.95162 1.05310 1.20368 0.99150 0.90548 1.07083 1.20443 0.86079 0.90656 0.93611 0.89829 1.86573 1.35604 1.50370 1.65762 1.22931 0.98824 0.98799 1.01543 1.23201 0.89778 0.89620 0.99274 1.85965 1.41048 1.12944 1.85074 0.93446 0.98971 0.98857 0.92274 0.92436 0.93148 0.92921 0.76169 0.85417 0.84064 0.85265 0.75028 0.91039 0.86083 0.84948 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.92 13.65 21.45 0.29 -58.63 16 2 C -0.04 -2.37 5.46 84.65 0.46 -1.91 16 3 Si 1.12 50.54 29.90 68.60 2.05 52.59 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.62 -35.81 9.11 25.60 0.23 -35.58 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.01 0.55 4.28 29.85 0.13 0.67 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.14 4.77 4.92 86.38 0.42 5.20 16 12 N -0.74 -22.59 5.74 -339.40 -1.95 -24.54 16 13 C 0.18 5.23 6.65 38.11 0.25 5.48 16 14 C -0.17 -5.01 9.31 22.35 0.21 -4.80 16 15 C -0.11 -2.96 9.93 22.41 0.22 -2.74 16 16 C 0.07 1.76 6.47 22.51 0.15 1.91 16 17 C -0.13 -3.12 5.58 -19.75 -0.11 -3.23 16 18 C -0.15 -4.06 9.15 22.43 0.21 -3.85 16 19 C 0.15 2.51 3.58 29.90 0.11 2.62 16 20 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 21 O -0.57 -9.77 12.62 -148.98 -1.88 -11.65 16 22 C -0.18 -2.13 5.81 30.75 0.18 -1.95 16 23 C 0.06 0.72 7.03 72.12 0.51 1.22 16 24 O -0.34 -7.51 10.27 -93.37 -0.96 -8.47 16 25 H 0.26 16.22 7.22 -92.70 -0.67 15.55 16 26 H -0.01 -0.44 8.01 -2.38 -0.02 -0.46 16 27 H -0.01 -0.38 8.00 -2.39 -0.02 -0.40 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 1.78 7.96 -2.39 -0.02 1.76 16 31 H 0.05 1.83 7.95 -2.38 -0.02 1.81 16 32 H 0.40 11.13 8.49 -92.71 -0.79 10.34 16 33 H 0.13 3.67 6.75 -2.91 -0.02 3.65 16 34 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.13 3.31 7.76 -2.91 -0.02 3.29 16 36 H 0.40 2.52 9.08 -74.06 -0.67 1.84 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.12 0.50 8.14 -2.39 -0.02 0.49 16 39 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -72.42 330.08 0.37 -72.05 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.31 Total: 19.39 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 3.13 Total: -40.73 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.66 Total: -83.17 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -2.84 Total: -20.12 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.05 Total: 52.59 kcal Total: -72.42 0.37 -72.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.456 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds