Wall clock time and date at job start Mon Mar 30 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38149 * 120.02892 * 2 1 4 4 C 1.38264 * 120.05815 * 180.30111 * 3 2 1 5 5 C 1.50695 * 119.94451 * 179.70529 * 4 3 2 6 6 C 1.53002 * 109.46870 * 269.97711 * 5 4 3 7 7 C 1.50708 * 109.47058 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99698 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00043 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99955 * 359.97438 * 9 7 6 11 11 C 1.37097 * 120.00280 * 180.02562 * 9 7 6 12 12 H 1.07999 * 119.99716 * 24.38999 * 11 9 7 13 13 C 1.38946 * 119.99976 * 204.39536 * 11 9 7 14 14 N 1.31411 * 120.00174 * 12.65291 * 13 11 9 15 15 Si 1.86800 * 120.00128 * 192.65160 * 13 11 9 16 16 H 1.48510 * 109.46873 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47202 * 119.99631 * 15 13 11 18 18 H 1.48503 * 109.47588 * 240.00292 * 15 13 11 19 19 C 1.38262 * 120.10862 * 359.67918 * 4 3 2 20 20 C 1.38139 * 120.05873 * 0.02716 * 19 4 3 21 21 C 1.50704 * 120.02952 * 179.97438 * 20 19 4 22 22 C 1.38729 * 120.03131 * 179.70636 * 2 1 3 23 23 O 1.35901 * 120.05288 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47238 * 270.29145 * 1 2 3 25 25 H 1.08998 * 109.47412 * 30.29122 * 1 2 3 26 26 H 1.09003 * 109.46945 * 150.29751 * 1 2 3 27 27 H 1.08001 * 119.97245 * 0.02992 * 3 2 1 28 28 H 1.09001 * 109.47817 * 29.97417 * 5 4 3 29 29 H 1.09000 * 109.47408 * 149.97758 * 5 4 3 30 30 H 1.09001 * 109.47171 * 299.99841 * 6 5 4 31 31 H 1.08995 * 109.47119 * 60.00312 * 6 5 4 32 32 H 1.09005 * 109.46505 * 85.86460 * 10 9 7 33 33 H 1.08996 * 109.47055 * 205.86296 * 10 9 7 34 34 H 1.09001 * 109.47092 * 325.86966 * 10 9 7 35 35 H 0.97004 * 119.99849 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.97031 * 179.97438 * 19 4 3 37 37 H 1.09000 * 109.47067 * 270.01428 * 21 20 19 38 38 H 1.08996 * 109.47147 * 30.01491 * 21 20 19 39 39 H 1.09001 * 109.47160 * 150.01781 * 21 20 19 40 40 H 0.96706 * 113.99540 * 269.72292 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5810 1.1968 -0.0063 5 6 4.3325 2.5029 -0.0130 6 6 4.5807 2.9410 -1.4578 7 6 5.3328 4.2470 -1.4645 8 8 5.6404 4.7750 -0.4168 9 7 5.6636 4.8281 -2.6347 10 6 5.2925 4.1899 -3.9002 11 6 6.3483 6.0158 -2.6409 12 1 6.9568 6.2928 -1.7927 13 6 6.2592 6.8633 -3.7384 14 7 5.3395 6.6580 -4.6543 15 14 7.4468 8.2948 -3.9119 16 1 8.3795 8.3070 -2.7563 17 1 8.2209 8.1460 -5.1705 18 1 6.6848 9.5689 -3.9471 19 6 4.2752 0.0011 -0.0059 20 6 3.5886 -1.1976 0.0002 21 6 4.3459 -2.5005 0.0001 22 6 2.2013 -1.2010 0.0062 23 8 1.5235 -2.3789 0.0127 24 1 -0.3633 0.0052 1.0276 25 1 -0.3634 0.8873 -0.5183 26 1 -0.3633 -0.8927 -0.5092 27 1 1.6584 2.1314 0.0005 28 1 3.7445 3.2632 0.5012 29 1 5.2872 2.3755 0.4972 30 1 5.1688 2.1809 -1.9720 31 1 3.6260 3.0686 -1.9679 32 1 4.2802 4.4874 -4.1739 33 1 5.9863 4.5010 -4.6811 34 1 5.3348 3.1067 -3.7869 35 1 5.2772 7.2499 -5.4202 36 1 5.3552 0.0042 -0.0112 37 1 4.5241 -2.8171 -1.0276 38 1 5.3001 -2.3662 0.5095 39 1 3.7613 -3.2607 0.5182 40 1 1.3314 -2.7172 0.8981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182332798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:33 Heat of formation + Delta-G solvation = -88.673843 kcal Electronic energy + Delta-G solvation = -20982.320259 eV Core-core repulsion = 17760.856731 eV Total energy + Delta-G solvation = -3221.463528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12386 -40.33045 -37.94704 -36.69871 -34.58334 -34.48531 -33.59875 -30.87664 -28.40335 -27.83584 -27.59592 -26.61580 -24.88277 -21.87916 -21.53310 -20.42710 -19.15270 -18.88700 -17.86899 -17.36929 -16.67884 -16.52306 -16.25950 -15.90954 -15.21227 -14.84822 -14.55591 -14.34857 -14.17392 -14.00628 -13.86195 -13.57684 -13.47322 -13.31254 -13.17198 -13.09927 -12.92210 -12.77887 -12.66299 -12.36842 -12.13442 -12.03374 -11.96981 -11.84861 -11.25722 -11.01521 -10.36163 -9.66870 -9.51965 -9.26737 -8.34745 -6.00100 0.28727 0.38842 1.35614 1.40318 1.54557 2.03452 2.27796 2.61642 3.07916 3.11296 3.36695 3.78926 3.83596 3.89766 4.15439 4.21457 4.35027 4.38582 4.47479 4.55145 4.68101 4.73363 4.80063 4.80628 4.82364 4.84762 4.94901 5.00332 5.07815 5.18626 5.29076 5.34908 5.37592 5.44107 5.50215 5.57058 5.73383 5.97050 6.10714 6.48438 6.90040 7.16619 7.47483 8.03953 8.68762 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033005 B = 0.003339 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.165417 B = 8384.329260 C = 8575.404821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.113 4.113 3 C -0.120 4.120 4 C -0.082 4.082 5 C -0.051 4.051 6 C -0.107 4.107 7 C 0.436 3.564 8 O -0.633 6.633 9 N -0.466 5.466 10 C 0.122 3.878 11 C -0.346 4.346 12 H 0.070 0.930 13 C -0.003 4.003 14 N -0.898 5.898 15 Si 0.990 3.010 16 H -0.273 1.273 17 H -0.264 1.264 18 H -0.276 1.276 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.105 4.105 22 C 0.090 3.910 23 O -0.497 6.497 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.273 0.727 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 -18.239 6.092 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.114 4.114 3 C -0.138 4.138 4 C -0.082 4.082 5 C -0.089 4.089 6 C -0.147 4.147 7 C 0.226 3.774 8 O -0.521 6.521 9 N -0.185 5.185 10 C -0.021 4.021 11 C -0.474 4.474 12 H 0.088 0.912 13 C -0.205 4.205 14 N -0.536 5.536 15 Si 0.813 3.187 16 H -0.198 1.198 17 H -0.189 1.189 18 H -0.201 1.201 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.161 4.161 22 C 0.045 3.955 23 O -0.310 6.310 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.146 0.854 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.150 0.850 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.436 -17.857 5.766 20.184 hybrid contribution 0.495 1.114 0.195 1.234 sum -6.941 -16.743 5.961 19.080 Atomic orbital electron populations 1.20697 0.89203 1.03375 1.03154 1.20425 0.97831 0.92169 1.00940 1.20992 0.93413 0.97996 1.01368 1.19868 0.93954 0.94570 0.99848 1.20133 0.99990 0.93494 0.95275 1.21428 1.00681 0.93799 0.98757 1.21160 0.83497 0.89371 0.83384 1.90462 1.60355 1.68522 1.32794 1.43891 1.48994 1.20057 1.05545 1.21416 1.00360 0.94525 0.85812 1.19662 1.25718 0.97350 1.04718 0.91177 1.26107 0.98149 1.00611 0.95622 1.70072 1.31640 1.39651 1.12286 0.84938 0.77979 0.77309 0.78466 1.19794 1.18925 1.20111 1.20990 1.00401 0.90901 1.01229 1.20433 0.93360 0.96641 1.00895 1.20678 0.99729 0.92861 1.02856 1.18138 0.89306 0.85237 1.02810 1.84755 1.76107 1.35307 1.34786 0.89958 0.91223 0.90722 0.85432 0.91892 0.91391 0.88439 0.89196 0.93968 0.92451 0.91573 0.91709 0.84985 0.91028 0.90721 0.90281 0.73817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.79 71.24 0.70 -1.15 16 2 C -0.11 -2.55 5.89 -19.77 -0.12 -2.67 16 3 C -0.12 -3.07 9.35 22.25 0.21 -2.86 16 4 C -0.08 -2.28 5.13 -19.85 -0.10 -2.38 16 5 C -0.05 -1.70 4.63 29.85 0.14 -1.56 16 6 C -0.11 -3.91 4.29 29.85 0.13 -3.78 16 7 C 0.44 21.86 7.63 87.66 0.67 22.53 16 8 O -0.63 -36.56 15.69 -3.05 -0.05 -36.61 16 9 N -0.47 -24.78 3.01 -658.88 -1.98 -26.76 16 10 C 0.12 5.51 8.44 127.77 1.08 6.59 16 11 C -0.35 -20.24 9.24 84.04 0.78 -19.46 16 12 H 0.07 4.37 7.45 -2.91 -0.02 4.35 16 13 C 0.00 -0.18 5.04 84.93 0.43 0.25 16 14 N -0.90 -48.54 10.84 21.66 0.23 -48.31 16 15 Si 0.99 43.17 29.57 68.60 2.03 45.19 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 19 C -0.12 -2.91 9.35 22.25 0.21 -2.70 16 20 C -0.11 -2.48 5.89 -19.77 -0.12 -2.59 16 21 C -0.10 -1.71 9.79 71.24 0.70 -1.01 16 22 C 0.09 1.94 6.65 22.51 0.15 2.09 16 23 O -0.50 -8.47 11.60 -92.43 -1.07 -9.55 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 26 H 0.07 1.23 7.53 -2.39 -0.02 1.21 16 27 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 28 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 29 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 30 H 0.10 3.15 7.41 -2.39 -0.02 3.13 16 31 H 0.09 3.10 8.11 -2.39 -0.02 3.08 16 32 H 0.04 1.95 7.83 -2.38 -0.02 1.93 16 33 H 0.06 2.74 6.80 -2.39 -0.02 2.73 16 34 H 0.07 2.40 6.61 -2.39 -0.02 2.39 16 35 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 36 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 39 H 0.08 1.04 7.53 -2.39 -0.02 1.03 16 40 H 0.40 3.10 9.06 -74.05 -0.67 2.43 16 Total: -1.00 -71.19 334.45 4.38 -66.82 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.37 Total: 17.94 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 4.84 Total: -8.72 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -1.75 Total: -75.07 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -1.12 Total: -46.16 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -71.19 4.38 -66.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182332798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.856 kcal (2) G-P(sol) polarization free energy of solvation -71.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds