Wall clock time and date at job start Mon Mar 30 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00010 * 2 1 4 4 H 1.48505 * 109.47220 * 239.99931 * 3 2 1 5 5 H 1.48502 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46972 * 120.00330 * 3 2 1 7 7 C 1.37874 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00435 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47202 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47040 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47072 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00008 * 179.97438 * 12 11 10 14 14 O 1.21550 * 119.99966 * 359.97438 * 13 12 11 15 15 C 1.47848 * 120.00150 * 179.97438 * 13 12 11 16 16 C 1.39575 * 120.14487 * 180.02562 * 15 13 12 17 17 C 1.37955 * 119.85263 * 180.27853 * 16 15 13 18 18 C 1.38361 * 120.14138 * 359.49245 * 17 16 15 19 19 C 1.50708 * 119.85196 * 180.25817 * 18 17 16 20 20 C 1.52999 * 109.47076 * 270.25154 * 19 18 17 21 21 O 1.42897 * 109.46959 * 179.97438 * 20 19 18 22 22 C 1.38356 * 120.29644 * 0.50649 * 18 17 16 23 23 C 1.37958 * 120.14423 * 359.75425 * 22 18 17 24 24 H 0.97002 * 119.99545 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46846 * 60.00186 * 9 7 2 26 26 H 1.08993 * 109.46577 * 300.00070 * 9 7 2 27 27 H 1.09005 * 109.46818 * 60.00475 * 10 9 7 28 28 H 1.08998 * 109.47349 * 300.00368 * 10 9 7 29 29 H 1.08997 * 109.47136 * 60.00222 * 11 10 9 30 30 H 1.09007 * 109.47136 * 300.00057 * 11 10 9 31 31 H 0.96996 * 120.00391 * 0.02562 * 12 11 10 32 32 H 1.08002 * 120.07104 * 359.97438 * 16 15 13 33 33 H 1.07998 * 119.92975 * 179.72529 * 17 16 15 34 34 H 1.08997 * 109.46821 * 30.25241 * 19 18 17 35 35 H 1.09000 * 109.46932 * 150.24699 * 19 18 17 36 36 H 1.09004 * 109.47072 * 300.00014 * 20 19 18 37 37 H 1.08994 * 109.47029 * 59.99595 * 20 19 18 38 38 H 0.96703 * 113.99843 * 179.97438 * 21 20 19 39 39 H 1.08006 * 119.93372 * 179.76996 * 22 18 17 40 40 H 1.07997 * 120.07488 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 7 2.4322 -6.1006 -0.0031 13 6 1.9830 -7.3713 -0.0032 14 8 0.7879 -7.5934 -0.0023 15 6 2.9437 -8.4951 -0.0044 16 6 2.4817 -9.8122 -0.0050 17 6 3.3835 -10.8562 -0.0003 18 6 4.7431 -10.5999 -0.0056 19 6 5.7225 -11.7454 -0.0063 20 6 6.0540 -12.1338 1.4360 21 8 6.9821 -13.2203 1.4353 22 6 5.2077 -9.2966 -0.0050 23 6 4.3166 -8.2435 -0.0043 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6248 -2.5570 0.8896 27 1 2.8725 -3.6047 0.8878 28 1 2.8712 -3.6039 -0.8922 29 1 0.8532 -5.0442 -0.8922 30 1 0.8539 -5.0455 0.8878 31 1 3.3859 -5.9234 -0.0027 32 1 1.4206 -10.0135 -0.0043 33 1 3.0274 -11.8758 0.0036 34 1 5.2820 -12.5995 -0.5206 35 1 6.6349 -11.4429 -0.5201 36 1 6.4944 -11.2795 1.9502 37 1 5.1415 -12.4361 1.9497 38 1 7.2381 -13.5195 2.3185 39 1 6.2703 -9.1033 -0.0054 40 1 4.6805 -7.2266 -0.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191785409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:38 Heat of formation + Delta-G solvation = -88.299796 kcal Electronic energy + Delta-G solvation = -19828.503764 eV Core-core repulsion = 16607.056456 eV Total energy + Delta-G solvation = -3221.447308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31500 -38.78519 -37.25947 -35.47350 -33.70339 -33.23374 -31.51414 -30.97447 -29.14839 -26.73007 -24.47860 -23.22061 -22.75043 -21.76537 -20.70010 -20.02035 -18.10710 -17.72503 -16.54353 -16.16080 -15.56597 -15.37601 -15.34487 -14.75921 -14.70072 -14.64733 -14.41513 -13.94547 -13.81733 -13.29453 -12.74983 -12.34506 -12.28876 -11.92025 -11.83932 -11.79872 -11.63886 -11.30853 -10.89820 -10.74836 -10.64296 -10.44394 -9.99028 -9.88801 -9.41791 -9.28062 -9.14789 -9.11597 -8.76857 -8.38270 -6.02904 -4.06242 0.59175 1.08804 2.77785 3.31034 3.31098 3.36039 3.38335 3.61418 3.80979 4.38748 4.43045 4.54010 4.62685 4.66365 4.80379 4.85157 5.01957 5.06650 5.13268 5.32699 5.43085 5.49419 5.60134 5.69516 5.72905 5.74957 6.00752 6.12736 6.14035 6.21329 6.42942 6.56935 6.58604 6.80006 6.97424 7.12796 7.61586 7.65156 7.74238 7.95433 8.31026 8.37071 9.00074 9.57894 11.08291 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.002407 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.899610 B =11631.904612 C =12296.998026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.720 5.720 13 C 0.550 3.450 14 O -0.541 6.541 15 C -0.129 4.129 16 C -0.059 4.059 17 C -0.123 4.123 18 C -0.066 4.066 19 C -0.083 4.083 20 C 0.080 3.920 21 O -0.577 6.577 22 C -0.122 4.122 23 C -0.084 4.084 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.397 0.603 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.382 0.618 39 H 0.129 0.871 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.830 -24.343 2.123 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.371 5.371 13 C 0.336 3.664 14 O -0.419 6.419 15 C -0.132 4.132 16 C -0.078 4.078 17 C -0.141 4.141 18 C -0.066 4.066 19 C -0.120 4.120 20 C 0.002 3.998 21 O -0.382 6.382 22 C -0.140 4.140 23 C -0.103 4.103 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.232 0.768 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.229 0.771 39 H 0.147 0.853 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.728 -24.261 1.475 26.988 hybrid contribution 0.925 1.113 0.614 1.572 sum 12.654 -23.148 2.090 26.464 Atomic orbital electron populations 1.69957 1.06053 1.26817 1.50402 1.25034 0.94877 0.99317 0.95265 0.86633 0.79551 0.83064 0.78580 1.20245 1.21265 1.20244 1.21160 0.92945 0.90938 1.51134 0.92697 1.19028 0.93841 0.90805 0.97703 1.21899 0.99814 0.93311 1.00902 1.21695 0.91841 0.84932 1.02199 1.46152 1.10913 1.05807 1.74195 1.18297 0.88124 0.83012 0.76933 1.90769 1.16230 1.84848 1.50076 1.20111 0.93505 0.94255 1.05345 1.21299 1.00785 0.90901 0.94805 1.21045 0.92281 0.99340 1.01432 1.19880 0.94050 0.94278 0.98408 1.20506 0.98548 0.96387 0.96551 1.22142 0.92012 0.88953 0.96646 1.86445 1.64922 1.52743 1.34138 1.20998 0.99918 0.91732 1.01313 1.21364 0.92114 0.99610 0.97185 0.92854 0.96231 0.96234 0.92690 0.92680 0.91543 0.91561 0.76768 0.84470 0.85332 0.89984 0.89958 0.93263 0.93297 0.77092 0.85321 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.50 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.02 16 12 N -0.72 -10.54 5.51 -61.25 -0.34 -10.88 16 13 C 0.55 8.53 7.77 -12.33 -0.10 8.44 16 14 O -0.54 -10.39 16.35 5.32 0.09 -10.31 16 15 C -0.13 -1.57 5.87 -104.97 -0.62 -2.19 16 16 C -0.06 -0.65 9.60 -39.19 -0.38 -1.03 16 17 C -0.12 -1.07 9.68 -39.64 -0.38 -1.46 16 18 C -0.07 -0.53 5.14 -104.53 -0.54 -1.07 16 19 C -0.08 -0.56 5.71 -27.88 -0.16 -0.72 16 20 C 0.08 0.50 7.03 37.16 0.26 0.76 16 21 O -0.58 -3.88 13.66 -35.23 -0.48 -4.36 16 22 C -0.12 -1.00 9.68 -39.64 -0.38 -1.38 16 23 C -0.08 -0.81 9.54 -39.18 -0.37 -1.18 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.40 4.64 6.51 -40.82 -0.27 4.38 16 32 H 0.14 1.55 7.65 -52.49 -0.40 1.15 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.38 0.90 9.12 45.56 0.42 1.31 16 39 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 40 H 0.13 1.01 6.41 -52.49 -0.34 0.67 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -33.99 343.31 -8.42 -42.41 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.20 Total: 0.79 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -3.38 Total: -13.20 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.40 Total: -36.91 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.39 Total: -14.67 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.99 -8.42 -42.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191785409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.893 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds