Wall clock time and date at job start Mon Mar 30 2020 01:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00010 * 2 1 4 4 H 1.48505 * 109.47220 * 239.99931 * 3 2 1 5 5 H 1.48502 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46972 * 120.00330 * 3 2 1 7 7 C 1.37874 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00435 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47202 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47040 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47072 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00008 * 179.97438 * 12 11 10 14 14 O 1.21550 * 119.99966 * 359.97438 * 13 12 11 15 15 C 1.47848 * 120.00150 * 179.97438 * 13 12 11 16 16 C 1.39575 * 120.14487 * 180.02562 * 15 13 12 17 17 C 1.37955 * 119.85263 * 180.27853 * 16 15 13 18 18 C 1.38361 * 120.14138 * 359.49245 * 17 16 15 19 19 C 1.50708 * 119.85196 * 180.25817 * 18 17 16 20 20 C 1.52999 * 109.47076 * 270.25154 * 19 18 17 21 21 O 1.42897 * 109.46959 * 179.97438 * 20 19 18 22 22 C 1.38356 * 120.29644 * 0.50649 * 18 17 16 23 23 C 1.37958 * 120.14423 * 359.75425 * 22 18 17 24 24 H 0.97002 * 119.99545 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46846 * 60.00186 * 9 7 2 26 26 H 1.08993 * 109.46577 * 300.00070 * 9 7 2 27 27 H 1.09005 * 109.46818 * 60.00475 * 10 9 7 28 28 H 1.08998 * 109.47349 * 300.00368 * 10 9 7 29 29 H 1.08997 * 109.47136 * 60.00222 * 11 10 9 30 30 H 1.09007 * 109.47136 * 300.00057 * 11 10 9 31 31 H 0.96996 * 120.00391 * 0.02562 * 12 11 10 32 32 H 1.08002 * 120.07104 * 359.97438 * 16 15 13 33 33 H 1.07998 * 119.92975 * 179.72529 * 17 16 15 34 34 H 1.08997 * 109.46821 * 30.25241 * 19 18 17 35 35 H 1.09000 * 109.46932 * 150.24699 * 19 18 17 36 36 H 1.09004 * 109.47072 * 300.00014 * 20 19 18 37 37 H 1.08994 * 109.47029 * 59.99595 * 20 19 18 38 38 H 0.96703 * 113.99843 * 179.97438 * 21 20 19 39 39 H 1.08006 * 119.93372 * 179.76996 * 22 18 17 40 40 H 1.07997 * 120.07488 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 7 2.4322 -6.1006 -0.0031 13 6 1.9830 -7.3713 -0.0032 14 8 0.7879 -7.5934 -0.0023 15 6 2.9437 -8.4951 -0.0044 16 6 2.4817 -9.8122 -0.0050 17 6 3.3835 -10.8562 -0.0003 18 6 4.7431 -10.5999 -0.0056 19 6 5.7225 -11.7454 -0.0063 20 6 6.0540 -12.1338 1.4360 21 8 6.9821 -13.2203 1.4353 22 6 5.2077 -9.2966 -0.0050 23 6 4.3166 -8.2435 -0.0043 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6248 -2.5570 0.8896 27 1 2.8725 -3.6047 0.8878 28 1 2.8712 -3.6039 -0.8922 29 1 0.8532 -5.0442 -0.8922 30 1 0.8539 -5.0455 0.8878 31 1 3.3859 -5.9234 -0.0027 32 1 1.4206 -10.0135 -0.0043 33 1 3.0274 -11.8758 0.0036 34 1 5.2820 -12.5995 -0.5206 35 1 6.6349 -11.4429 -0.5201 36 1 6.4944 -11.2795 1.9502 37 1 5.1415 -12.4361 1.9497 38 1 7.2381 -13.5195 2.3185 39 1 6.2703 -9.1033 -0.0054 40 1 4.6805 -7.2266 -0.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191785409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:37 Heat of formation + Delta-G solvation = -112.224116 kcal Electronic energy + Delta-G solvation = -19829.541201 eV Core-core repulsion = 16607.056456 eV Total energy + Delta-G solvation = -3222.484744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.31063 -39.73699 -37.76495 -37.02101 -35.27912 -34.28168 -33.03867 -31.91253 -30.01153 -28.40241 -25.60545 -24.50551 -23.58108 -22.63135 -22.30793 -21.13719 -19.03577 -18.48828 -18.35554 -17.30224 -16.75220 -16.52970 -16.29604 -16.07575 -15.76063 -15.49058 -15.33695 -15.14279 -14.60412 -14.41393 -14.10788 -13.78135 -13.69638 -13.33957 -12.85854 -12.71973 -12.63332 -12.52911 -12.42400 -12.21701 -11.98311 -11.68945 -11.62277 -11.27990 -10.98231 -10.86995 -10.55048 -10.25328 -9.98952 -9.75588 -8.19487 -6.31228 -0.23248 0.37919 1.41785 1.44952 1.52792 1.76667 2.10738 2.42554 2.79248 3.14098 3.30343 3.68442 3.77285 3.97421 4.09547 4.11870 4.18406 4.18542 4.35886 4.39352 4.47215 4.52331 4.56268 4.82323 4.90355 4.91750 4.94144 5.06051 5.11208 5.15174 5.27588 5.35299 5.38615 5.51110 5.55322 5.69367 5.83376 5.88454 6.21392 6.49246 6.85953 6.89111 7.13593 7.38311 8.92365 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.002407 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.899610 B =11631.904612 C =12296.998026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.709 5.709 13 C 0.548 3.452 14 O -0.588 6.588 15 C -0.153 4.153 16 C -0.073 4.073 17 C -0.122 4.122 18 C -0.055 4.055 19 C -0.081 4.081 20 C 0.080 3.920 21 O -0.595 6.595 22 C -0.119 4.119 23 C -0.081 4.081 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.414 0.586 32 H 0.124 0.876 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.399 0.601 39 H 0.157 0.843 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.188 -25.016 2.276 29.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.360 5.360 13 C 0.337 3.663 14 O -0.470 6.470 15 C -0.156 4.156 16 C -0.092 4.092 17 C -0.139 4.139 18 C -0.055 4.055 19 C -0.118 4.118 20 C 0.003 3.997 21 O -0.404 6.404 22 C -0.137 4.137 23 C -0.099 4.099 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.011 0.989 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.253 0.747 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.249 0.751 39 H 0.174 0.826 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 15.143 -24.952 1.641 29.234 hybrid contribution -0.089 1.206 0.578 1.340 sum 15.054 -23.746 2.219 28.204 Atomic orbital electron populations 1.70111 1.07960 1.27856 1.51591 1.26050 0.95778 1.03638 0.94794 0.85451 0.78161 0.77826 0.79291 1.18997 1.21243 1.18959 1.21649 0.93779 0.91938 1.50576 0.91419 1.18947 0.94458 0.92979 0.95092 1.21605 0.98474 0.91582 1.02285 1.21291 0.91956 0.85425 1.00852 1.45897 1.11297 1.04897 1.73936 1.18869 0.88147 0.83726 0.75558 1.90738 1.18443 1.85507 1.52321 1.19905 0.93954 0.93146 1.08568 1.21327 1.00768 0.91349 0.95755 1.21239 0.92372 0.99622 1.00698 1.20111 0.93948 0.94952 0.96527 1.20516 0.98303 0.95813 0.97217 1.22129 0.92247 0.89191 0.96169 1.86394 1.65034 1.52929 1.36028 1.21324 1.01084 0.91212 1.00053 1.21558 0.90920 1.01134 0.96312 0.92826 0.98970 0.98943 0.91158 0.91199 0.93079 0.93050 0.74741 0.85798 0.83331 0.89781 0.89361 0.92570 0.92948 0.75062 0.82554 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.29 21.45 0.28 -56.96 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.20 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 11 C 0.13 4.64 5.67 86.38 0.49 5.13 16 12 N -0.71 -20.44 5.51 -465.97 -2.57 -23.01 16 13 C 0.55 17.27 7.77 86.79 0.67 17.94 16 14 O -0.59 -23.70 16.35 -3.87 -0.06 -23.76 16 15 C -0.15 -3.64 5.87 -20.09 -0.12 -3.76 16 16 C -0.07 -1.60 9.60 22.53 0.22 -1.39 16 17 C -0.12 -1.91 9.68 22.23 0.22 -1.70 16 18 C -0.05 -0.73 5.14 -19.80 -0.10 -0.84 16 19 C -0.08 -0.85 5.71 29.85 0.17 -0.68 16 20 C 0.08 0.76 7.03 71.98 0.51 1.27 16 21 O -0.59 -6.51 13.66 -148.98 -2.03 -8.55 16 22 C -0.12 -1.56 9.68 22.23 0.22 -1.35 16 23 C -0.08 -1.36 9.54 22.53 0.21 -1.15 16 24 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 27 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.41 8.92 6.51 -92.71 -0.60 8.32 16 32 H 0.12 2.97 7.65 -2.91 -0.02 2.95 16 33 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 35 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.40 0.95 9.12 -74.06 -0.68 0.27 16 39 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.15 1.85 6.41 -2.91 -0.02 1.83 16 Total: -1.00 -74.91 343.31 0.90 -74.01 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -0.23 Total: 11.21 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 3.49 Total: -18.62 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -2.28 Total: -79.97 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -2.10 Total: -32.31 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -74.91 0.90 -74.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191785409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.214 kcal (2) G-P(sol) polarization free energy of solvation -74.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds