Wall clock time and date at job start Mon Mar 30 2020 01:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00420 * 2 1 4 4 H 1.48499 * 109.47537 * 270.00120 * 3 2 1 5 5 H 1.48495 * 109.47193 * 30.00412 * 3 2 1 6 6 H 1.48501 * 109.46986 * 150.00062 * 3 2 1 7 7 C 1.37882 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00174 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00008 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.50237 * 59.92600 * 9 7 2 11 11 C 1.53123 * 109.50911 * 299.81455 * 9 7 2 12 12 C 1.53116 * 109.16464 * 182.40525 * 11 9 7 13 13 C 1.53041 * 109.28157 * 57.64427 * 12 11 9 14 14 N 1.46842 * 109.52461 * 300.82529 * 13 12 11 15 15 C 1.46902 * 111.00006 * 185.83362 * 14 13 12 16 16 C 1.50706 * 109.46577 * 45.79109 * 15 14 13 17 17 C 1.38251 * 119.92702 * 90.00001 * 16 15 14 18 18 C 1.38233 * 120.14722 * 179.97438 * 17 16 15 19 19 C 1.38569 * 120.00268 * 359.97438 * 18 17 16 20 20 O 1.35993 * 120.07603 * 180.02562 * 19 18 17 21 21 C 1.39158 * 119.84805 * 0.02562 * 19 18 17 22 22 O 1.35994 * 120.06952 * 179.97438 * 21 19 18 23 23 C 1.38236 * 119.92629 * 269.71951 * 16 15 14 24 24 C 1.46850 * 111.19962 * 61.73935 * 14 13 12 25 25 H 0.97008 * 119.99920 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.51449 * 302.30691 * 11 9 7 27 27 H 1.09000 * 109.52719 * 62.42616 * 11 9 7 28 28 H 1.08999 * 109.50586 * 177.59199 * 12 11 9 29 29 H 1.09001 * 109.49704 * 297.70961 * 12 11 9 30 30 H 1.08997 * 109.45896 * 180.80682 * 13 12 11 31 31 H 1.09008 * 109.45747 * 60.83923 * 13 12 11 32 32 H 1.09000 * 109.46894 * 285.79342 * 15 14 13 33 33 H 1.09000 * 109.47263 * 165.78908 * 15 14 13 34 34 H 1.08008 * 119.92380 * 359.97438 * 17 16 15 35 35 H 1.08005 * 120.00003 * 179.97438 * 18 17 16 36 36 H 0.96703 * 113.99537 * 90.00395 * 20 19 18 37 37 H 0.96700 * 113.99488 * 89.99671 * 22 21 19 38 38 H 1.08006 * 120.00261 * 0.02718 * 23 16 15 39 39 H 1.08999 * 109.45996 * 58.27332 * 24 14 13 40 40 H 1.08998 * 109.46346 * 178.23702 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6227 -2.5566 -0.8895 11 6 0.3742 -2.5835 1.2521 12 6 -0.3414 -3.9369 1.2746 13 6 0.6985 -5.0591 1.2370 14 7 1.5108 -4.9349 0.0201 15 6 2.4278 -6.0740 -0.1193 16 6 1.6818 -7.3553 0.1509 17 6 1.0612 -8.0243 -0.8877 18 6 0.3761 -9.2001 -0.6451 19 6 0.3108 -9.7112 0.6412 20 8 -0.3623 -10.8682 0.8815 21 6 0.9355 -9.0378 1.6866 22 8 0.8737 -9.5351 2.9509 23 6 1.6245 -7.8621 1.4357 24 6 2.2446 -3.6630 -0.0011 25 1 -0.4850 0.8401 -0.0004 26 1 0.9983 -2.4866 2.1405 27 1 -0.3629 -1.7807 1.2355 28 1 -0.9340 -4.0202 2.1857 29 1 -0.9950 -4.0173 0.4060 30 1 0.1916 -6.0240 1.2385 31 1 1.3432 -4.9862 2.1130 32 1 3.2451 -5.9719 0.5946 33 1 2.8304 -6.0946 -1.1321 34 1 1.1118 -7.6272 -1.8909 35 1 -0.1082 -9.7206 -1.4582 36 1 0.1828 -11.6633 0.8056 37 1 1.5955 -10.1398 3.1713 38 1 2.1137 -7.3398 2.2446 39 1 2.8819 -3.5968 0.8806 40 1 2.8607 -3.6141 -0.8989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203882158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:09 Heat of formation + Delta-G solvation = -86.794601 kcal Electronic energy + Delta-G solvation = -21565.426950 eV Core-core repulsion = 18344.044912 eV Total energy + Delta-G solvation = -3221.382038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32797 -39.84990 -37.88215 -37.72328 -35.47823 -33.65627 -31.91218 -31.14587 -30.50402 -26.95982 -26.81356 -23.83587 -23.78193 -23.27394 -21.97853 -20.36632 -19.67214 -18.61617 -18.37419 -17.26531 -17.07524 -16.62697 -16.41460 -15.92848 -15.56848 -15.29786 -14.93564 -14.67191 -14.58545 -14.36855 -14.01432 -13.52737 -13.34795 -13.11187 -12.87328 -12.84322 -12.63855 -12.56484 -12.40747 -12.10774 -11.82210 -11.72155 -11.38815 -11.15358 -10.86941 -10.66079 -10.37965 -9.80010 -9.49316 -9.07968 -8.06879 -6.21195 0.13863 0.25823 1.42536 1.42919 1.53083 2.42465 2.50587 3.10046 3.20292 3.23615 3.29124 3.76736 3.89573 4.18114 4.20176 4.32366 4.34795 4.40608 4.57342 4.59883 4.68219 4.76503 4.86128 4.88708 4.95962 4.97560 5.09361 5.17397 5.19810 5.32667 5.37005 5.51398 5.60448 5.64153 5.76711 5.95874 6.11588 6.20292 6.31185 6.45738 6.64488 6.91756 6.97668 7.46808 8.97936 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039742 B = 0.003626 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.382979 B = 7720.027753 C = 7848.741367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.052 3.948 10 H -0.002 1.002 11 C -0.102 4.102 12 C -0.112 4.112 13 C 0.070 3.930 14 N -0.540 5.540 15 C 0.092 3.908 16 C -0.075 4.075 17 C -0.095 4.095 18 C -0.130 4.130 19 C 0.072 3.928 20 O -0.501 6.501 21 C 0.072 3.928 22 O -0.502 6.502 23 C -0.130 4.130 24 C 0.081 3.919 25 H 0.260 0.740 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.024 0.976 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.407 0.593 37 H 0.406 0.594 38 H 0.129 0.871 39 H 0.017 0.983 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -21.571 1.149 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.016 0.984 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.058 4.058 14 N -0.265 5.265 15 C -0.035 4.035 16 C -0.075 4.075 17 C -0.114 4.114 18 C -0.149 4.149 19 C 0.027 3.973 20 O -0.314 6.314 21 C 0.027 3.973 22 O -0.314 6.314 23 C -0.149 4.149 24 C -0.046 4.046 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.266 0.734 37 H 0.264 0.736 38 H 0.147 0.853 39 H 0.036 0.964 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.287 -20.757 0.888 21.034 hybrid contribution 1.506 0.648 0.716 1.789 sum 4.793 -20.109 1.604 20.735 Atomic orbital electron populations 1.70048 1.07256 1.27044 1.51237 1.25742 0.95642 1.02408 0.94804 0.85600 0.78704 0.79367 0.78233 1.20082 1.21068 1.19219 1.21524 0.93067 0.92049 1.50744 0.92787 1.18590 0.93018 0.91446 0.93599 0.98397 1.21459 0.99123 0.95882 0.97609 1.21597 0.97646 0.95217 1.00542 1.22030 0.95098 0.98582 0.90099 1.62093 1.24447 1.01814 1.38150 1.21149 0.92939 0.86769 1.02608 1.19700 0.98985 0.95762 0.93059 1.21156 0.96058 0.94185 0.99951 1.21542 0.99701 0.97432 0.96189 1.18885 0.96698 0.89903 0.91803 1.84866 1.38749 1.15045 1.92694 1.18793 0.98933 0.94954 0.84656 1.84879 1.53700 1.66338 1.26496 1.21330 1.00256 0.96382 0.96976 1.22014 0.95288 0.88387 0.98902 0.93116 0.95908 0.92441 0.91889 0.93268 0.90432 0.95828 0.93786 0.88666 0.83947 0.83045 0.73427 0.73565 0.85349 0.96439 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.99 11.36 21.45 0.24 -53.75 16 2 C 0.01 0.71 5.30 84.66 0.45 1.16 16 3 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.54 -29.85 8.56 25.60 0.22 -29.63 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.05 2.70 2.26 -11.49 -0.03 2.67 16 10 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 11 C -0.10 -5.08 5.03 30.67 0.15 -4.92 16 12 C -0.11 -4.62 6.09 30.65 0.19 -4.43 16 13 C 0.07 2.50 4.58 86.33 0.40 2.89 16 14 N -0.54 -19.45 4.80 -900.91 -4.32 -23.77 16 15 C 0.09 2.53 5.43 85.56 0.46 2.99 16 16 C -0.07 -1.82 4.11 -19.86 -0.08 -1.90 16 17 C -0.09 -2.07 9.69 22.27 0.22 -1.86 16 18 C -0.13 -2.57 9.98 22.35 0.22 -2.35 16 19 C 0.07 1.53 6.72 22.57 0.15 1.68 16 20 O -0.50 -9.16 13.29 -79.60 -1.06 -10.21 16 21 C 0.07 1.61 6.72 22.57 0.15 1.77 16 22 O -0.50 -10.19 13.29 -79.62 -1.06 -11.25 16 23 C -0.13 -3.09 7.74 22.35 0.17 -2.92 16 24 C 0.08 3.42 4.65 86.32 0.40 3.83 16 25 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 26 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.06 3.21 6.16 -2.39 -0.01 3.20 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 2.61 5.65 -2.39 -0.01 2.60 16 31 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.04 1.17 8.02 -2.39 -0.02 1.15 16 33 H 0.10 2.36 8.08 -2.39 -0.02 2.34 16 34 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.41 2.84 9.06 -74.06 -0.67 2.17 16 37 H 0.41 3.70 9.06 -74.06 -0.67 3.03 16 38 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 2.63 8.12 -2.39 -0.02 2.61 16 Total: -1.00 -68.95 323.72 -1.38 -70.33 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.29 Total: 13.69 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 3.08 Total: -31.02 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -4.08 Total: -77.52 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -2.12 Total: -21.47 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.95 -1.38 -70.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203882158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.463 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds