Wall clock time and date at job start Mon Mar 30 2020 01:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00030 * 2 1 4 4 H 1.48497 * 109.47385 * 269.99999 * 3 2 1 5 5 H 1.48502 * 109.47294 * 30.00074 * 3 2 1 6 6 H 1.48503 * 109.47333 * 150.00094 * 3 2 1 7 7 C 1.37879 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.53128 * 109.52249 * 179.97438 * 9 7 2 11 11 C 1.53030 * 109.27841 * 177.62345 * 10 9 7 12 12 N 1.46851 * 109.52336 * 300.81753 * 11 10 9 13 13 C 1.46905 * 110.99741 * 185.83971 * 12 11 10 14 14 C 1.50703 * 109.46574 * 169.99867 * 13 12 11 15 15 C 1.38250 * 119.92833 * 269.97940 * 14 13 12 16 16 C 1.38247 * 120.14499 * 180.02562 * 15 14 13 17 17 C 1.38561 * 119.99934 * 359.97358 * 16 15 14 18 18 O 1.35998 * 120.07319 * 180.02562 * 17 16 15 19 19 C 1.39155 * 119.85285 * 359.72963 * 17 16 15 20 20 O 1.36000 * 120.07547 * 180.27665 * 19 17 16 21 21 C 1.38248 * 119.92284 * 90.00595 * 14 13 12 22 22 C 1.46843 * 111.19529 * 61.74571 * 12 11 10 23 23 C 1.53034 * 109.52518 * 298.25615 * 22 12 11 24 24 H 0.96997 * 119.99839 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.52636 * 59.87587 * 9 7 2 26 26 H 1.08996 * 109.50540 * 57.67658 * 10 9 7 27 27 H 1.09004 * 109.52974 * 297.58278 * 10 9 7 28 28 H 1.09005 * 109.46073 * 180.80109 * 11 10 9 29 29 H 1.09004 * 109.45755 * 60.83193 * 11 10 9 30 30 H 1.08994 * 109.46905 * 50.00524 * 13 12 11 31 31 H 1.08993 * 109.47158 * 289.99959 * 13 12 11 32 32 H 1.07994 * 119.92864 * 0.02562 * 15 14 13 33 33 H 1.07996 * 119.99818 * 179.97438 * 16 15 14 34 34 H 0.96705 * 113.99356 * 89.99953 * 18 17 16 35 35 H 0.96701 * 113.99648 * 270.30012 * 20 19 17 36 36 H 1.08002 * 119.99888 * 359.97119 * 21 14 13 37 37 H 1.09003 * 109.46595 * 58.27374 * 22 12 11 38 38 H 1.08996 * 109.46328 * 178.24306 * 22 12 11 39 39 H 1.09003 * 109.50173 * 299.24486 * 23 22 12 40 40 H 1.09001 * 109.53897 * 179.14243 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2449 -3.6639 -0.0027 11 6 1.4750 -4.9852 0.0560 12 7 0.6532 -5.0206 1.2725 13 6 0.0068 -6.3300 1.4331 14 6 -0.6222 -6.4153 2.7999 15 6 0.1093 -6.9040 3.8665 16 6 -0.4634 -6.9847 5.1222 17 6 -1.7731 -6.5749 5.3139 18 8 -2.3378 -6.6531 6.5487 19 6 -2.5072 -6.0773 4.2416 20 8 -3.7912 -5.6685 4.4259 21 6 -1.9295 -6.0053 2.9843 22 6 -0.3405 -3.9395 1.2736 23 6 0.3751 -2.5870 1.2512 24 1 -0.4850 0.8400 -0.0004 25 1 0.6226 -2.5562 -0.8906 26 1 2.8990 -3.5850 0.8655 27 1 2.8433 -3.6316 -0.9133 28 1 2.1803 -5.8162 0.0697 29 1 0.8314 -5.0696 -0.8197 30 1 0.7517 -7.1185 1.3261 31 1 -0.7627 -6.4513 0.6708 32 1 1.1302 -7.2233 3.7184 33 1 0.1100 -7.3671 5.9536 34 1 -2.2188 -5.8584 7.0866 35 1 -4.4481 -6.3671 4.3010 36 1 -2.4987 -5.6240 2.1494 37 1 -0.9756 -4.0290 0.3922 38 1 -0.9539 -4.0110 2.1718 39 1 0.9999 -2.4911 2.1393 40 1 -0.3624 -1.7845 1.2367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203882555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:45 Heat of formation + Delta-G solvation = -65.800727 kcal Electronic energy + Delta-G solvation = -21560.318663 eV Core-core repulsion = 18339.846988 eV Total energy + Delta-G solvation = -3220.471675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26890 -38.39254 -36.96609 -36.59300 -33.89911 -31.75685 -30.31805 -29.71435 -29.42442 -26.32577 -24.32901 -22.91588 -22.04237 -21.82540 -20.85895 -18.64279 -18.53414 -17.85605 -16.38300 -16.26752 -15.65428 -15.41768 -15.17853 -14.42978 -14.21095 -14.08309 -13.86420 -13.20170 -12.91930 -12.64803 -12.52420 -12.35420 -11.92470 -11.89086 -11.55117 -11.31768 -11.13829 -10.93752 -10.69639 -10.46536 -10.21301 -10.19674 -9.95026 -9.41376 -8.97545 -8.87370 -8.64696 -8.46671 -8.26749 -7.76528 -5.94891 -4.00202 1.09070 1.22051 3.32757 3.39458 3.39839 3.43093 4.01245 4.22964 4.47071 4.58401 4.80223 4.88013 5.24890 5.31686 5.35504 5.48162 5.59272 5.71921 5.75897 5.89368 5.90446 6.10320 6.14504 6.22916 6.26710 6.33066 6.56621 6.63082 6.64418 6.66473 6.86542 7.08839 7.17333 7.36834 7.45266 7.61950 7.67585 7.69252 7.84671 8.07175 8.18426 8.50793 9.03477 9.64145 11.11361 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.004190 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.208138 B = 6680.664773 C = 7285.398990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.530 5.530 13 C 0.089 3.911 14 C -0.058 4.058 15 C -0.091 4.091 16 C -0.133 4.133 17 C 0.073 3.927 18 O -0.497 6.497 19 C 0.079 3.921 20 O -0.492 6.492 21 C -0.121 4.121 22 C 0.053 3.947 23 C -0.103 4.103 24 H 0.259 0.741 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.390 0.610 35 H 0.388 0.612 36 H 0.131 0.869 37 H 0.021 0.979 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -15.208 7.614 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.254 5.254 13 C -0.039 4.039 14 C -0.058 4.058 15 C -0.110 4.110 16 C -0.151 4.151 17 C 0.028 3.972 18 O -0.307 6.307 19 C 0.034 3.966 20 O -0.301 6.301 21 C -0.141 4.141 22 C -0.074 4.074 23 C -0.141 4.141 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.246 0.754 35 H 0.243 0.757 36 H 0.149 0.851 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.599 -15.011 7.928 17.354 hybrid contribution -0.281 0.903 -0.555 1.096 sum -3.880 -14.109 7.373 16.385 Atomic orbital electron populations 1.69877 1.05875 1.26290 1.51085 1.24967 0.94826 0.98995 0.95216 0.86639 0.79932 0.83697 0.77989 1.20813 1.21306 1.19954 1.21209 0.92867 0.90682 1.50107 0.92767 1.18691 0.92706 0.91763 0.93959 1.21678 0.98704 0.93690 1.00315 1.22137 0.95663 0.99417 0.89471 1.62054 1.23582 1.01348 1.38461 1.21050 0.97282 0.93533 0.91989 1.19732 0.92809 0.97160 0.96141 1.20935 0.99726 0.98947 0.91378 1.21318 0.93699 1.01781 0.98317 1.18817 0.92153 1.00855 0.85420 1.84759 1.78311 1.43048 1.24553 1.18789 0.86296 0.99067 0.92419 1.84829 1.13454 1.39045 1.92821 1.21329 0.95985 1.00320 0.96424 1.22373 0.93207 0.92987 0.98809 1.21647 1.00162 0.92984 0.99328 0.93113 0.96195 0.92464 0.93140 0.92356 0.95743 0.90213 0.94385 0.85170 0.85154 0.75407 0.75684 0.85113 0.96059 0.92190 0.93901 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 11.37 55.43 0.63 -25.03 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.12 8.56 -34.44 -0.29 -14.41 16 8 H 0.05 1.48 7.75 -52.48 -0.41 1.08 16 9 C 0.05 1.18 2.16 -91.65 -0.20 0.99 16 10 C -0.11 -2.21 5.32 -26.65 -0.14 -2.36 16 11 C 0.06 1.06 5.46 -3.84 -0.02 1.04 16 12 N -0.53 -9.27 4.65 -236.12 -1.10 -10.36 16 13 C 0.09 1.24 5.12 -4.97 -0.03 1.22 16 14 C -0.06 -0.78 4.89 -104.61 -0.51 -1.29 16 15 C -0.09 -1.12 9.69 -39.57 -0.38 -1.50 16 16 C -0.13 -1.55 9.98 -39.46 -0.39 -1.95 16 17 C 0.07 0.91 6.72 -39.12 -0.26 0.65 16 18 O -0.50 -5.58 13.29 -34.23 -0.45 -6.03 16 19 C 0.08 1.05 6.72 -39.12 -0.26 0.79 16 20 O -0.49 -6.05 13.29 -34.24 -0.46 -6.51 16 21 C -0.12 -1.66 7.80 -39.46 -0.31 -1.97 16 22 C 0.05 1.06 5.15 -3.84 -0.02 1.04 16 23 C -0.10 -2.47 5.13 -26.65 -0.14 -2.61 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.88 8.02 -51.93 -0.42 0.46 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.96 7.93 -51.93 -0.41 0.55 16 31 H 0.04 0.52 8.06 -51.93 -0.42 0.10 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.39 2.93 9.06 45.56 0.41 3.34 16 35 H 0.39 2.96 9.06 45.56 0.41 3.37 16 36 H 0.13 1.76 7.95 -52.49 -0.42 1.34 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 1.15 5.75 -51.93 -0.30 0.85 16 39 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 2.46 6.18 -51.93 -0.32 2.14 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -31.41 324.50 -8.94 -40.35 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.38 Total: 5.01 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -3.05 Total: -18.76 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.47 Total: -35.40 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.91 Total: -12.54 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.41 -8.94 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203882555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.452 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds