Wall clock time and date at job start Mon Mar 30 2020 01:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00030 * 2 1 4 4 H 1.48497 * 109.47385 * 269.99999 * 3 2 1 5 5 H 1.48502 * 109.47294 * 30.00074 * 3 2 1 6 6 H 1.48503 * 109.47333 * 150.00094 * 3 2 1 7 7 C 1.37879 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.53128 * 109.52249 * 179.97438 * 9 7 2 11 11 C 1.53030 * 109.27841 * 177.62345 * 10 9 7 12 12 N 1.46851 * 109.52336 * 300.81753 * 11 10 9 13 13 C 1.46905 * 110.99741 * 185.83971 * 12 11 10 14 14 C 1.50703 * 109.46574 * 169.99867 * 13 12 11 15 15 C 1.38250 * 119.92833 * 269.97940 * 14 13 12 16 16 C 1.38247 * 120.14499 * 180.02562 * 15 14 13 17 17 C 1.38561 * 119.99934 * 359.97358 * 16 15 14 18 18 O 1.35998 * 120.07319 * 180.02562 * 17 16 15 19 19 C 1.39155 * 119.85285 * 359.72963 * 17 16 15 20 20 O 1.36000 * 120.07547 * 180.27665 * 19 17 16 21 21 C 1.38248 * 119.92284 * 90.00595 * 14 13 12 22 22 C 1.46843 * 111.19529 * 61.74571 * 12 11 10 23 23 C 1.53034 * 109.52518 * 298.25615 * 22 12 11 24 24 H 0.96997 * 119.99839 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.52636 * 59.87587 * 9 7 2 26 26 H 1.08996 * 109.50540 * 57.67658 * 10 9 7 27 27 H 1.09004 * 109.52974 * 297.58278 * 10 9 7 28 28 H 1.09005 * 109.46073 * 180.80109 * 11 10 9 29 29 H 1.09004 * 109.45755 * 60.83193 * 11 10 9 30 30 H 1.08994 * 109.46905 * 50.00524 * 13 12 11 31 31 H 1.08993 * 109.47158 * 289.99959 * 13 12 11 32 32 H 1.07994 * 119.92864 * 0.02562 * 15 14 13 33 33 H 1.07996 * 119.99818 * 179.97438 * 16 15 14 34 34 H 0.96705 * 113.99356 * 89.99953 * 18 17 16 35 35 H 0.96701 * 113.99648 * 270.30012 * 20 19 17 36 36 H 1.08002 * 119.99888 * 359.97119 * 21 14 13 37 37 H 1.09003 * 109.46595 * 58.27374 * 22 12 11 38 38 H 1.08996 * 109.46328 * 178.24306 * 22 12 11 39 39 H 1.09003 * 109.50173 * 299.24486 * 23 22 12 40 40 H 1.09001 * 109.53897 * 179.14243 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2449 -3.6639 -0.0027 11 6 1.4750 -4.9852 0.0560 12 7 0.6532 -5.0206 1.2725 13 6 0.0068 -6.3300 1.4331 14 6 -0.6222 -6.4153 2.7999 15 6 0.1093 -6.9040 3.8665 16 6 -0.4634 -6.9847 5.1222 17 6 -1.7731 -6.5749 5.3139 18 8 -2.3378 -6.6531 6.5487 19 6 -2.5072 -6.0773 4.2416 20 8 -3.7912 -5.6685 4.4259 21 6 -1.9295 -6.0053 2.9843 22 6 -0.3405 -3.9395 1.2736 23 6 0.3751 -2.5870 1.2512 24 1 -0.4850 0.8400 -0.0004 25 1 0.6226 -2.5562 -0.8906 26 1 2.8990 -3.5850 0.8655 27 1 2.8433 -3.6316 -0.9133 28 1 2.1803 -5.8162 0.0697 29 1 0.8314 -5.0696 -0.8197 30 1 0.7517 -7.1185 1.3261 31 1 -0.7627 -6.4513 0.6708 32 1 1.1302 -7.2233 3.7184 33 1 0.1100 -7.3671 5.9536 34 1 -2.2188 -5.8584 7.0866 35 1 -4.4481 -6.3671 4.3010 36 1 -2.4987 -5.6240 2.1494 37 1 -0.9756 -4.0290 0.3922 38 1 -0.9539 -4.0110 2.1718 39 1 0.9999 -2.4911 2.1393 40 1 -0.3624 -1.7845 1.2367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203882555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:44 Heat of formation + Delta-G solvation = -88.597639 kcal Electronic energy + Delta-G solvation = -21561.307211 eV Core-core repulsion = 18339.846988 eV Total energy + Delta-G solvation = -3221.460224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23324 -39.80671 -37.86587 -37.70491 -35.62083 -33.46392 -31.62685 -31.18792 -30.59385 -27.93632 -25.86431 -24.02775 -23.48779 -23.33455 -22.07237 -20.34009 -19.50209 -18.80200 -18.43385 -17.24209 -16.96241 -16.52101 -16.42692 -16.18877 -15.60356 -15.18854 -14.90317 -14.69906 -14.48375 -14.25293 -14.13422 -13.50555 -13.20609 -13.08943 -12.90342 -12.84770 -12.67983 -12.44831 -12.27854 -12.11951 -11.93599 -11.84164 -11.34687 -11.13733 -10.79947 -10.64060 -10.37915 -9.80696 -9.44243 -9.14652 -8.07696 -6.21171 0.14628 0.27931 1.40602 1.41593 1.51822 2.43633 2.45178 3.11700 3.18958 3.22378 3.42222 3.83036 3.88939 4.23163 4.25892 4.33482 4.35860 4.43599 4.52369 4.60290 4.71924 4.79406 4.84892 4.91163 4.98354 4.99642 5.10900 5.21139 5.24959 5.33988 5.35602 5.57269 5.60702 5.63332 5.76802 6.00503 6.03154 6.27746 6.33927 6.41232 6.63794 6.88923 6.91151 7.46813 8.96893 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.004190 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.208138 B = 6680.664773 C = 7285.398990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.043 3.957 10 C -0.100 4.100 11 C 0.066 3.934 12 N -0.534 5.534 13 C 0.092 3.908 14 C -0.071 4.071 15 C -0.091 4.091 16 C -0.131 4.131 17 C 0.068 3.932 18 O -0.502 6.502 19 C 0.067 3.933 20 O -0.505 6.505 21 C -0.135 4.135 22 C 0.070 3.930 23 C -0.094 4.094 24 H 0.259 0.741 25 H -0.012 1.012 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.023 0.977 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.406 0.594 35 H 0.406 0.594 36 H 0.124 0.876 37 H 0.012 0.988 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 -16.676 8.415 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.137 4.137 11 C -0.062 4.062 12 N -0.259 5.259 13 C -0.035 4.035 14 C -0.072 4.072 15 C -0.110 4.110 16 C -0.150 4.150 17 C 0.023 3.977 18 O -0.315 6.315 19 C 0.022 3.978 20 O -0.317 6.317 21 C -0.154 4.154 22 C -0.058 4.058 23 C -0.132 4.132 24 H 0.068 0.932 25 H 0.006 0.994 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.041 0.959 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.264 0.736 35 H 0.264 0.736 36 H 0.142 0.858 37 H 0.031 0.969 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.523 -16.498 8.734 18.837 hybrid contribution -0.668 1.341 -0.753 1.677 sum -3.192 -15.157 7.981 17.424 Atomic orbital electron populations 1.70026 1.07227 1.26993 1.51667 1.25754 0.95646 1.02405 0.94899 0.85638 0.78792 0.79519 0.78210 1.20102 1.21046 1.19242 1.21611 0.93039 0.92276 1.50151 0.92979 1.18675 0.93222 0.92851 0.92814 1.21542 0.97910 0.93974 1.00319 1.22091 0.96022 0.98541 0.89499 1.61975 1.23167 1.02397 1.38381 1.21132 0.98041 0.91875 0.92442 1.19768 0.92875 0.98159 0.96397 1.21179 1.00459 0.98253 0.91089 1.21578 0.93437 1.01044 0.98911 1.18955 0.92498 1.00555 0.85671 1.84715 1.78332 1.44216 1.24202 1.18935 0.86762 0.99441 0.92646 1.84774 1.13734 1.40412 1.92826 1.21372 0.96444 1.01044 0.96562 1.22037 0.93145 0.91902 0.98703 1.21400 0.99074 0.94629 0.98125 0.93173 0.99431 0.92976 0.92613 0.88554 0.95908 0.87393 0.94039 0.83243 0.82895 0.73559 0.73612 0.85823 0.96935 0.91603 0.95395 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.45 11.37 21.45 0.24 -54.20 16 2 C 0.01 0.63 5.31 84.66 0.45 1.08 16 3 Si 0.95 44.47 29.54 68.60 2.03 46.49 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.53 -30.06 8.56 25.60 0.22 -29.84 16 8 H 0.05 2.88 7.75 -2.91 -0.02 2.86 16 9 C 0.04 2.20 2.16 -11.46 -0.02 2.18 16 10 C -0.10 -4.10 5.32 30.65 0.16 -3.94 16 11 C 0.07 2.17 5.46 86.32 0.47 2.64 16 12 N -0.53 -17.79 4.65 -900.94 -4.19 -21.98 16 13 C 0.09 2.33 5.12 85.56 0.44 2.77 16 14 C -0.07 -1.79 4.89 -19.86 -0.10 -1.89 16 15 C -0.09 -1.98 9.69 22.27 0.22 -1.77 16 16 C -0.13 -2.73 9.98 22.35 0.22 -2.51 16 17 C 0.07 1.60 6.72 22.57 0.15 1.75 16 18 O -0.50 -10.33 13.29 -79.67 -1.06 -11.39 16 19 C 0.07 1.72 6.72 22.57 0.15 1.87 16 20 O -0.51 -12.12 13.29 -79.69 -1.06 -13.17 16 21 C -0.14 -3.58 7.80 22.35 0.17 -3.41 16 22 C 0.07 2.79 5.15 86.33 0.44 3.24 16 23 C -0.09 -4.65 5.13 30.65 0.16 -4.49 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 25 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 26 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.10 2.51 8.02 -2.38 -0.02 2.49 16 29 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.11 2.15 7.93 -2.39 -0.02 2.13 16 31 H 0.04 1.04 8.06 -2.39 -0.02 1.02 16 32 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.41 5.35 9.06 -74.05 -0.67 4.68 16 35 H 0.41 5.91 9.06 -74.06 -0.67 5.24 16 36 H 0.12 3.35 7.95 -2.91 -0.02 3.32 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 2.54 5.75 -2.39 -0.01 2.53 16 39 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 3.20 6.18 -2.39 -0.01 3.18 16 Total: -1.00 -68.39 324.50 -1.19 -69.58 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.29 Total: 16.98 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 3.14 Total: -32.30 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -3.94 Total: -76.18 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -2.12 Total: -24.56 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.39 -1.19 -69.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203882555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.021 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds