Wall clock time and date at job start Mon Mar 30 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99737 * 2 1 4 4 H 1.48495 * 109.47684 * 270.00492 * 3 2 1 5 5 H 1.48506 * 109.47145 * 30.00201 * 3 2 1 6 6 H 1.48501 * 109.47411 * 150.00177 * 3 2 1 7 7 C 1.37870 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00188 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00124 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.53455 * 60.09842 * 9 7 2 11 11 C 1.53121 * 109.50506 * 300.00095 * 9 7 2 12 12 C 1.53113 * 109.16253 * 182.40249 * 11 9 7 13 13 C 1.53039 * 109.27729 * 57.65444 * 12 11 9 14 14 N 1.46844 * 109.52362 * 300.81957 * 13 12 11 15 15 C 1.46900 * 111.00167 * 185.84187 * 14 13 12 16 16 C 1.50697 * 109.47289 * 66.04350 * 15 14 13 17 17 C 1.38194 * 119.97427 * 260.30012 * 16 15 14 18 18 C 1.38154 * 120.11021 * 180.25817 * 17 16 15 19 19 C 1.38799 * 120.05312 * 359.44212 * 18 17 16 20 20 O 1.35893 * 120.02648 * 180.30456 * 19 18 17 21 21 C 1.38616 * 119.94305 * 0.27918 * 19 18 17 22 22 C 1.38654 * 119.89427 * 0.02562 * 21 19 18 23 23 O 1.35891 * 120.02872 * 179.97438 * 22 21 19 24 24 C 1.46846 * 111.19956 * 61.74339 * 14 13 12 25 25 H 0.96992 * 120.00439 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.52267 * 62.49564 * 11 9 7 27 27 H 1.09007 * 109.57274 * 302.34254 * 11 9 7 28 28 H 1.08996 * 109.50572 * 297.71639 * 12 11 9 29 29 H 1.09002 * 109.50522 * 177.59080 * 12 11 9 30 30 H 1.09007 * 109.46583 * 180.80414 * 13 12 11 31 31 H 1.09004 * 109.46311 * 60.83600 * 13 12 11 32 32 H 1.08997 * 109.47178 * 306.04211 * 15 14 13 33 33 H 1.09003 * 109.47118 * 186.04811 * 15 14 13 34 34 H 1.08001 * 119.94633 * 359.97438 * 17 16 15 35 35 H 1.08002 * 119.97709 * 179.72642 * 18 17 16 36 36 H 0.96694 * 114.00612 * 90.00595 * 20 19 18 37 37 H 1.08003 * 120.05211 * 179.97438 * 21 19 18 38 38 H 0.96706 * 113.99726 * 90.00527 * 23 22 21 39 39 H 1.09001 * 109.46518 * 58.27039 * 24 14 13 40 40 H 1.09003 * 109.46376 * 178.24238 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 -0.0011 10 1 3.8764 -0.6820 0.8893 11 6 4.0224 -0.4719 -1.2511 12 6 5.5523 -0.5287 -1.2745 13 6 6.0042 -1.9905 -1.2430 14 7 5.4910 -2.6368 -0.0284 15 6 6.0192 -4.0010 0.1054 16 6 7.5079 -3.9434 0.3315 17 6 8.3753 -4.1635 -0.7216 18 6 9.7407 -4.1166 -0.5162 19 6 10.2446 -3.8368 0.7464 20 8 11.5877 -3.7848 0.9464 21 6 9.3766 -3.6100 1.8031 22 6 8.0066 -3.6639 1.5959 23 8 7.1532 -3.4425 2.6299 24 6 4.0227 -2.6364 -0.0066 25 1 -0.4850 0.8399 0.0004 26 1 3.6968 0.5681 -1.2297 27 1 3.6261 -0.9593 -2.1419 28 1 5.9492 -0.0064 -0.4040 29 1 5.9203 -0.0536 -2.1839 30 1 7.0934 -2.0342 -1.2451 31 1 5.6184 -2.5089 -2.1209 32 1 5.8115 -4.5620 -0.8058 33 1 5.5417 -4.4940 0.9522 34 1 7.9852 -4.3770 -1.7058 35 1 10.4166 -4.2933 -1.3399 36 1 11.9712 -2.9069 0.8153 37 1 9.7667 -3.3926 2.7864 38 1 6.9009 -2.5155 2.7400 39 1 3.6462 -3.1517 -0.8902 40 1 3.6727 -3.1491 0.8894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204278698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:01 Heat of formation + Delta-G solvation = -58.670576 kcal Electronic energy + Delta-G solvation = -21831.687977 eV Core-core repulsion = 18611.525488 eV Total energy + Delta-G solvation = -3220.162489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30969 -38.52278 -37.73509 -35.89416 -33.95700 -32.21656 -30.55538 -30.20293 -29.69530 -25.74531 -24.94983 -22.86608 -22.71241 -21.65347 -20.74062 -19.11257 -18.85786 -17.11912 -16.73809 -16.38594 -16.02303 -15.78182 -15.17982 -14.47137 -14.30537 -13.96143 -13.85220 -13.63792 -13.45849 -12.96657 -12.81037 -12.34415 -12.28578 -12.00664 -11.88152 -11.24211 -11.12231 -11.06344 -10.85178 -10.62044 -10.48645 -10.09265 -9.98096 -9.72051 -9.14554 -8.96720 -8.93550 -8.54246 -8.49946 -7.88148 -6.07758 -4.07038 1.03477 1.13851 3.27003 3.28990 3.38196 3.40934 3.94617 4.36322 4.41141 4.43987 4.74260 4.83840 4.94908 5.23403 5.27082 5.40877 5.46221 5.56182 5.62364 5.75305 5.79080 5.90533 5.98386 6.09907 6.13395 6.21919 6.25880 6.30091 6.40844 6.48957 6.53634 6.58743 6.77583 6.81499 7.17829 7.37459 7.40219 7.54803 7.62677 7.72902 7.84706 8.51271 8.95619 9.54911 11.05571 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.004272 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.690396 B = 6552.954532 C = 6646.592179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.022 3.978 10 H 0.035 0.965 11 C -0.123 4.123 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.536 5.536 15 C 0.095 3.905 16 C -0.104 4.104 17 C -0.084 4.084 18 C -0.158 4.158 19 C 0.113 3.887 20 O -0.500 6.500 21 C -0.177 4.177 22 C 0.149 3.851 23 O -0.492 6.492 24 C 0.077 3.923 25 H 0.263 0.737 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.389 0.611 37 H 0.132 0.868 38 H 0.400 0.600 39 H 0.027 0.973 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.019 -4.951 -0.826 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.003 3.997 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.156 4.156 13 C -0.068 4.068 14 N -0.261 5.261 15 C -0.032 4.032 16 C -0.105 4.105 17 C -0.103 4.103 18 C -0.176 4.176 19 C 0.069 3.931 20 O -0.310 6.310 21 C -0.196 4.196 22 C 0.104 3.896 23 O -0.304 6.304 24 C -0.049 4.049 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.245 0.755 37 H 0.150 0.850 38 H 0.258 0.742 39 H 0.045 0.955 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.969 -5.775 -0.213 20.788 hybrid contribution 0.136 1.518 -0.955 1.799 sum 20.105 -4.257 -1.168 20.584 Atomic orbital electron populations 1.69898 1.06315 1.26940 1.50898 1.24984 0.94653 0.99031 0.94427 0.86818 0.79939 0.83501 0.77794 1.20786 1.22653 1.18897 1.21003 0.88794 0.94492 1.50979 0.90953 1.19149 0.95927 0.91051 0.93616 0.94710 1.22034 0.92593 1.00230 1.01184 1.21642 0.98101 0.95196 1.00685 1.22039 0.98742 0.95402 0.90586 1.62017 1.10394 1.15769 1.37896 1.20925 0.89987 0.91105 1.01230 1.20267 0.96457 1.01259 0.92484 1.20863 0.92291 0.98605 0.98542 1.21344 0.95705 1.03972 0.96597 1.18210 0.82803 1.00055 0.92058 1.84816 1.18035 1.35746 1.92413 1.21674 0.92840 1.05035 1.00005 1.18015 0.87666 0.97362 0.86596 1.84701 1.64298 1.32946 1.48423 1.22109 0.83198 0.99703 0.99935 0.92682 0.93594 0.92570 0.91995 0.92899 0.91788 0.95426 0.94368 0.89330 0.85433 0.85439 0.75481 0.85015 0.74225 0.95501 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 3 Si 0.89 21.82 24.35 -169.99 -4.14 17.68 16 4 H -0.28 -6.73 6.89 56.52 0.39 -6.34 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 7 C -0.51 -14.15 9.15 -34.44 -0.31 -14.47 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.74 16 9 C 0.02 0.50 1.85 -91.69 -0.17 0.33 16 10 H 0.03 0.83 7.21 -51.93 -0.37 0.46 16 11 C -0.12 -2.58 4.73 -26.61 -0.13 -2.71 16 12 C -0.12 -2.01 6.09 -26.65 -0.16 -2.17 16 13 C 0.06 0.92 5.25 -3.83 -0.02 0.90 16 14 N -0.54 -8.67 4.65 -236.11 -1.10 -9.76 16 15 C 0.10 1.34 4.75 -4.98 -0.02 1.31 16 16 C -0.10 -1.33 4.61 -104.45 -0.48 -1.81 16 17 C -0.08 -0.94 8.53 -39.63 -0.34 -1.28 16 18 C -0.16 -1.64 9.98 -39.40 -0.39 -2.04 16 19 C 0.11 1.24 6.70 -39.23 -0.26 0.97 16 20 O -0.50 -4.70 13.50 -19.40 -0.26 -4.97 16 21 C -0.18 -2.05 9.93 -39.29 -0.39 -2.44 16 22 C 0.15 1.91 6.67 -39.24 -0.26 1.65 16 23 O -0.49 -6.38 12.73 -19.40 -0.25 -6.62 16 24 C 0.08 1.50 4.68 -3.83 -0.02 1.48 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.05 1.03 3.34 -51.93 -0.17 0.86 16 27 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.88 6.30 -51.93 -0.33 0.55 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.51 7.98 -51.93 -0.41 0.10 16 33 H 0.09 1.30 7.69 -51.93 -0.40 0.90 16 34 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.39 1.76 9.06 45.56 0.41 2.18 16 37 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.40 4.17 9.06 45.56 0.41 4.58 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.36 8.01 -51.93 -0.42 0.94 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -31.74 317.93 -7.50 -39.24 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.26 Total: 4.66 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -3.06 Total: -18.35 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.32 Total: -36.43 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.51 Total: -11.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.74 -7.50 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204278698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.432 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds