Wall clock time and date at job start Mon Mar 30 2020 01:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 14 14 O 1.42907 * 109.47306 * 180.02562 * 13 12 11 15 15 C 1.42900 * 113.99865 * 180.02562 * 14 13 12 16 16 H 1.08996 * 110.83830 * 327.72279 * 15 14 13 17 17 C 1.54770 * 110.94658 * 91.44960 * 15 14 13 18 18 O 1.43819 * 102.85547 * 92.99361 * 17 15 14 19 19 C 1.35949 * 109.31888 * 27.34450 * 18 17 15 20 20 C 1.39179 * 130.76917 * 161.60412 * 19 18 17 21 21 N 1.31694 * 120.77337 * 179.55085 * 20 19 18 22 22 C 1.31883 * 122.22945 * 0.02562 * 21 20 19 23 23 C 1.38453 * 120.51176 * 0.19214 * 22 21 20 24 24 C 1.37856 * 118.91157 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 27 27 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 28 28 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 29 29 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 30 30 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 31 31 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 32 32 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 33 33 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 34 34 H 1.09001 * 109.46997 * 299.99574 * 13 12 11 35 35 H 1.08992 * 109.47534 * 59.99520 * 13 12 11 36 36 H 1.08996 * 110.73642 * 211.34149 * 17 15 14 37 37 H 1.09008 * 110.73598 * 334.65908 * 17 15 14 38 38 H 1.08000 * 119.61059 * 359.57447 * 20 19 18 39 39 H 1.08001 * 119.74985 * 180.20624 * 22 21 20 40 40 H 1.08000 * 120.54292 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4742 -6.1501 -0.0005 13 6 1.7092 -7.4750 -0.0018 14 8 2.6378 -8.5613 -0.0006 15 6 2.0231 -9.8514 -0.0023 16 1 1.0779 -9.8312 0.5400 17 6 1.8207 -10.3660 -1.4478 18 8 3.0125 -11.1359 -1.6832 19 6 3.4841 -11.6080 -0.4987 20 6 4.3716 -12.6438 -0.2218 21 7 4.7042 -12.9323 1.0194 22 6 4.2214 -12.2660 2.0500 23 6 3.3295 -11.2245 1.8583 24 6 2.9552 -10.8956 0.5729 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5568 -0.8903 27 1 0.6245 -2.5571 0.8896 28 1 2.8717 -3.6045 0.8895 29 1 2.8718 -3.6044 -0.8905 30 1 0.8531 -5.0451 0.8886 31 1 0.8537 -5.0446 -0.8913 32 1 3.1015 -6.0923 -0.8901 33 1 3.1003 -6.0924 0.8899 34 1 1.0817 -7.5331 0.8875 35 1 1.0835 -7.5325 -0.8924 36 1 0.9344 -10.9971 -1.5122 37 1 1.7547 -9.5333 -2.1482 38 1 4.7926 -13.2174 -1.0343 39 1 4.5242 -12.5345 3.0513 40 1 2.9335 -10.6788 2.7019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:38 Heat of formation + Delta-G solvation = -79.901370 kcal Electronic energy + Delta-G solvation = -20143.554167 eV Core-core repulsion = 16922.471042 eV Total energy + Delta-G solvation = -3221.083125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.55333 -39.73659 -38.74530 -36.86368 -34.89703 -33.71761 -32.06557 -31.46766 -30.41577 -28.13139 -25.48585 -24.87439 -23.99292 -23.01010 -22.42122 -21.72289 -18.82331 -18.47666 -18.40095 -18.13987 -17.21572 -16.91360 -16.53594 -16.51999 -15.68496 -15.47977 -15.32966 -15.04339 -14.64268 -14.53707 -14.01430 -13.94411 -13.38439 -13.13406 -12.98406 -12.78480 -12.70853 -12.62718 -12.37954 -12.33918 -11.94654 -11.88745 -11.35568 -11.32102 -11.04809 -10.84653 -10.69497 -10.63387 -10.55090 -9.50737 -8.20674 -6.31719 -0.01528 0.07347 1.39148 1.42150 1.50160 2.06973 2.35889 2.41182 2.82422 3.12016 3.17475 3.30480 3.53605 3.60641 3.98588 4.00104 4.11626 4.19911 4.24070 4.28345 4.36073 4.40461 4.49082 4.50773 4.69535 4.71649 4.81530 4.86995 4.95889 5.06310 5.07055 5.27785 5.29345 5.29473 5.38440 5.54980 5.78245 5.86096 5.87081 6.08901 6.26206 6.85479 6.87425 7.37402 8.90808 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041357 B = 0.002279 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.876178 B =12282.465630 C =12512.062612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.101 4.101 11 C -0.105 4.105 12 C -0.110 4.110 13 C 0.061 3.939 14 O -0.388 6.388 15 C 0.097 3.903 16 H 0.120 0.880 17 C 0.024 3.976 18 O -0.309 6.309 19 C 0.055 3.945 20 C 0.071 3.929 21 N -0.465 5.465 22 C 0.061 3.939 23 C -0.102 4.102 24 C -0.154 4.154 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.176 0.824 39 H 0.194 0.806 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.109 -26.632 1.696 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.015 4.015 10 C -0.139 4.139 11 C -0.143 4.143 12 C -0.147 4.147 13 C -0.014 4.014 14 O -0.307 6.307 15 C 0.039 3.961 16 H 0.137 0.863 17 C -0.051 4.051 18 O -0.222 6.222 19 C 0.007 3.993 20 C -0.087 4.087 21 N -0.174 5.174 22 C -0.096 4.096 23 C -0.121 4.121 24 C -0.163 4.163 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.193 0.807 39 H 0.210 0.790 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.801 -27.178 1.592 27.488 hybrid contribution -0.723 1.933 -0.187 2.072 sum 3.079 -25.245 1.405 25.471 Atomic orbital electron populations 1.70083 1.07731 1.27834 1.51670 1.25996 0.95827 1.03372 0.94754 0.85514 0.78311 0.78137 0.79176 1.19232 1.20689 1.19201 1.21725 0.93510 0.92690 1.50571 0.92449 1.19036 0.94521 0.93138 0.94815 1.21456 0.98050 0.94011 1.00336 1.21423 0.97775 0.93042 1.02044 1.21435 0.98455 0.92056 1.02776 1.22732 0.91659 0.85185 1.01846 1.88031 1.34573 1.13278 1.94854 1.22236 0.96052 0.82469 0.95299 0.86269 1.24717 0.86797 0.96333 0.97269 1.86807 1.42074 1.66191 1.27114 1.20958 0.97155 0.95406 0.85820 1.22323 0.97040 0.94311 0.94997 1.67629 1.22736 1.27956 0.99092 1.23269 0.94384 0.92876 0.99074 1.21765 0.96709 0.97430 0.96234 1.21196 1.02689 0.97391 0.95002 0.92741 0.98963 0.98943 0.93336 0.93394 0.91959 0.91968 0.91840 0.91735 0.91450 0.91459 0.86480 0.86050 0.80682 0.78958 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 3 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.55 -31.64 9.11 25.60 0.23 -31.40 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -4.12 5.15 30.60 0.16 -3.96 16 11 C -0.11 -3.29 5.21 30.60 0.16 -3.13 16 12 C -0.11 -2.83 5.58 30.59 0.17 -2.66 16 13 C 0.06 1.24 5.82 71.98 0.42 1.66 16 14 O -0.39 -8.74 10.10 -148.98 -1.51 -10.24 16 15 C 0.10 1.64 3.56 30.65 0.11 1.75 16 16 H 0.12 1.36 7.90 -2.39 -0.02 1.34 16 17 C 0.02 0.35 7.76 72.59 0.56 0.92 16 18 O -0.31 -6.63 11.09 -92.98 -1.03 -7.66 16 19 C 0.05 1.15 7.09 22.71 0.16 1.31 16 20 C 0.07 1.39 11.22 84.94 0.95 2.35 16 21 N -0.46 -9.21 10.32 -194.98 -2.01 -11.22 16 22 C 0.06 0.94 11.21 84.74 0.95 1.89 16 23 C -0.10 -1.58 10.10 22.23 0.22 -1.36 16 24 C -0.15 -2.94 6.04 -19.54 -0.12 -3.06 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.12 1.68 8.12 -2.38 -0.02 1.66 16 38 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -71.09 339.74 3.36 -67.73 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.01 Total: 5.60 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 4.59 Total: -34.02 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -1.73 Total: -68.01 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -2.54 Total: -17.90 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.09 3.36 -67.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.171 kcal (2) G-P(sol) polarization free energy of solvation -71.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds