Wall clock time and date at job start Mon Mar 30 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86801 * 119.99580 * 2 1 4 4 H 1.48502 * 109.47194 * 239.99612 * 3 2 1 5 5 H 1.48502 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46872 * 119.99845 * 3 2 1 7 7 C 1.38631 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 180.02562 * 7 2 1 9 9 O 1.34928 * 120.00372 * 359.97438 * 7 2 1 10 10 C 1.42896 * 116.99967 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.52848 * 330.14495 * 10 9 7 12 12 C 1.50722 * 109.58210 * 90.31117 * 10 9 7 13 13 O 1.44232 * 112.85350 * 211.45078 * 12 10 9 14 14 C 1.43937 * 116.11295 * 318.68589 * 13 12 10 15 15 C 1.50736 * 111.88093 * 319.24308 * 14 13 12 16 16 N 1.47600 * 108.44132 * 93.37810 * 15 14 13 17 17 C 1.46906 * 110.99562 * 152.96673 * 16 15 14 18 18 C 1.50702 * 109.47035 * 293.95076 * 17 16 15 19 19 C 1.38230 * 119.99850 * 269.72565 * 18 17 16 20 20 C 1.38243 * 119.99911 * 179.78971 * 19 18 17 21 21 C 1.38238 * 119.99436 * 0.44103 * 20 19 18 22 22 C 1.38233 * 120.00431 * 359.81660 * 21 20 19 23 23 C 1.38234 * 119.99637 * 90.00541 * 18 17 16 24 24 C 1.40456 * 114.43587 * 279.54864 * 16 15 14 25 25 H 0.97001 * 120.00345 * 0.02562 * 1 2 3 26 26 H 1.09004 * 108.80653 * 332.31785 * 12 10 9 27 27 H 1.08999 * 108.80576 * 90.68999 * 12 10 9 28 28 H 1.08994 * 108.99882 * 198.62465 * 14 13 12 29 29 H 1.09000 * 108.99864 * 79.86250 * 14 13 12 30 30 H 1.08998 * 109.63734 * 213.06307 * 15 14 13 31 31 H 1.08994 * 109.64044 * 333.68965 * 15 14 13 32 32 H 1.08995 * 109.46952 * 53.95304 * 17 16 15 33 33 H 1.08998 * 109.47143 * 173.95416 * 17 16 15 34 34 H 1.07995 * 120.00434 * 0.02562 * 19 18 17 35 35 H 1.07999 * 120.00218 * 180.28018 * 20 19 18 36 36 H 1.08007 * 119.99743 * 179.83245 * 21 20 19 37 37 H 1.08000 * 120.00209 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.00592 * 359.97438 * 23 18 17 39 39 H 1.08997 * 109.08753 * 181.76108 * 24 16 15 40 40 H 1.08997 * 109.08778 * 300.81562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1035 1.6965 1.2126 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0005 11 1 3.0584 -3.3878 -0.5119 12 6 2.3815 -3.9954 1.4195 13 8 3.6465 -4.6714 1.5710 14 6 3.9919 -5.6089 0.5348 15 6 2.8037 -6.4277 0.0992 16 7 2.1776 -5.7620 -1.0599 17 6 1.4779 -6.7341 -1.9105 18 6 2.4813 -7.6702 -2.5336 19 6 3.0465 -7.3628 -3.7570 20 6 3.9702 -8.2193 -4.3264 21 6 4.3216 -9.3877 -3.6766 22 6 3.7524 -9.6978 -2.4557 23 6 2.8320 -8.8391 -1.8842 24 6 1.3371 -4.6867 -0.7282 25 1 -0.4851 0.8400 -0.0004 26 1 2.3758 -3.1129 2.0594 27 1 1.5853 -4.6669 1.7408 28 1 4.7673 -6.2786 0.9064 29 1 4.3797 -5.0614 -0.3242 30 1 3.1322 -7.4272 -0.1857 31 1 2.0850 -6.4938 0.9160 32 1 0.7742 -7.3059 -1.3057 33 1 0.9369 -6.2065 -2.6960 34 1 2.7695 -6.4516 -4.2662 35 1 4.4152 -7.9769 -5.2802 36 1 5.0412 -10.0583 -4.1228 37 1 4.0267 -10.6108 -1.9482 38 1 2.3873 -9.0813 -0.9303 39 1 0.8995 -4.2817 -1.6407 40 1 0.5385 -5.0456 -0.0790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224383621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:44 Heat of formation + Delta-G solvation = -34.892730 kcal Electronic energy + Delta-G solvation = -21761.068828 eV Core-core repulsion = 18541.937424 eV Total energy + Delta-G solvation = -3219.131404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01254 -38.84564 -36.22966 -35.94906 -32.29208 -31.66079 -31.06114 -30.33703 -28.40250 -26.03062 -24.95922 -24.07166 -22.68591 -21.39751 -20.59424 -20.07986 -17.68218 -16.90106 -16.58991 -16.28151 -15.55496 -15.33849 -14.93136 -14.74101 -14.42224 -14.21690 -13.75658 -13.51167 -13.34422 -12.89057 -12.69130 -12.59311 -12.52447 -11.96173 -11.57693 -11.36081 -11.22530 -11.09391 -11.02996 -10.75989 -10.67375 -10.50070 -10.14770 -9.74366 -9.19390 -8.99660 -8.94537 -8.84587 -8.11556 -7.96488 -5.97181 -3.61604 1.23664 1.31490 3.32921 3.34396 3.37391 3.58900 4.07544 4.20845 4.40014 4.68721 4.74166 4.89886 5.00109 5.12065 5.20219 5.28460 5.31499 5.37511 5.41686 5.52436 5.53926 5.60216 5.69857 5.81134 5.91453 5.94400 5.96472 6.03276 6.10985 6.25808 6.35022 6.41320 6.49632 6.56363 6.75910 6.82275 6.90453 7.16538 7.43623 7.47767 7.73177 8.41397 9.46350 10.09522 11.23281 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026194 B = 0.004065 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.690651 B = 6886.171002 C = 7247.541088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.025 3.975 3 Si 0.926 3.074 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.362 4.362 8 H 0.065 0.935 9 O -0.280 6.280 10 C 0.074 3.926 11 H 0.059 0.941 12 C 0.041 3.959 13 O -0.396 6.396 14 C 0.063 3.937 15 C 0.021 3.979 16 N -0.544 5.544 17 C 0.098 3.902 18 C -0.071 4.071 19 C -0.097 4.097 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.118 4.118 24 C 0.073 3.927 25 H 0.259 0.741 26 H 0.099 0.901 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.321 -18.687 -5.279 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.173 4.173 3 Si 0.753 3.247 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.441 4.441 8 H 0.082 0.918 9 O -0.194 6.194 10 C 0.014 3.986 11 H 0.077 0.923 12 C -0.035 4.035 13 O -0.316 6.316 14 C -0.014 4.014 15 C -0.106 4.106 16 N -0.269 5.269 17 C -0.029 4.029 18 C -0.071 4.071 19 C -0.116 4.116 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.056 4.056 25 H 0.069 0.931 26 H 0.117 0.883 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.416 -18.302 -5.354 20.120 hybrid contribution -0.120 0.425 0.267 0.516 sum 6.296 -17.877 -5.087 19.624 Atomic orbital electron populations 1.70012 1.05398 1.26127 1.51666 1.24940 0.95663 0.97693 0.99020 0.86032 0.78546 0.81617 0.78538 1.20314 1.20878 1.20266 1.20862 0.90265 0.82347 1.50638 0.91753 1.85661 1.31195 1.09921 1.92631 1.21963 0.95300 0.88140 0.93231 0.92298 1.23157 0.84157 0.96522 0.99687 1.88241 1.39262 1.57029 1.47088 1.22310 0.95768 0.91406 0.91923 1.22580 0.97461 0.98624 0.91947 1.59022 1.37508 1.09667 1.20740 1.21006 0.93002 0.92397 0.96453 1.19814 0.97914 0.94625 0.94797 1.21087 0.96231 0.99061 0.95184 1.21166 0.97972 0.94725 1.00053 1.21123 1.00153 0.97354 0.95654 1.21087 0.97495 0.99509 0.95986 1.21071 0.98451 0.94503 0.99577 1.21064 0.93341 0.90384 1.00813 0.93122 0.88298 0.94236 0.89908 0.91923 0.89331 0.93295 0.93842 0.89558 0.85784 0.86169 0.86390 0.86298 0.86315 0.89726 0.95742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.67 13.68 55.48 0.76 -26.91 16 2 C 0.03 0.74 5.49 -17.51 -0.10 0.64 16 3 Si 0.93 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.36 -10.59 9.67 30.88 0.30 -10.29 16 8 H 0.06 1.81 7.64 -52.48 -0.40 1.40 16 9 O -0.28 -7.90 9.36 -16.50 -0.15 -8.05 16 10 C 0.07 1.65 2.39 -27.14 -0.06 1.58 16 11 H 0.06 1.37 6.91 -51.93 -0.36 1.01 16 12 C 0.04 0.85 5.98 36.02 0.22 1.06 16 13 O -0.40 -7.59 10.92 -35.23 -0.38 -7.97 16 14 C 0.06 0.98 6.35 36.02 0.23 1.21 16 15 C 0.02 0.29 5.16 -4.57 -0.02 0.27 16 16 N -0.54 -8.32 4.01 -241.06 -0.97 -9.29 16 17 C 0.10 1.24 5.12 -4.97 -0.03 1.21 16 18 C -0.07 -0.82 4.99 -104.63 -0.52 -1.35 16 19 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 21 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.22 7.91 -39.58 -0.31 -1.53 16 24 C 0.07 1.35 4.64 -6.43 -0.03 1.32 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.10 2.24 7.89 -51.93 -0.41 1.83 16 27 H 0.04 0.77 6.60 -51.93 -0.34 0.42 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.05 7.26 -51.93 -0.38 0.68 16 30 H 0.09 1.06 4.74 -51.93 -0.25 0.81 16 31 H 0.05 0.72 6.85 -51.93 -0.36 0.37 16 32 H 0.04 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.09 1.07 7.71 -51.93 -0.40 0.67 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 1.08 7.44 -52.49 -0.39 0.69 16 39 H 0.08 1.64 7.79 -51.93 -0.40 1.23 16 40 H 0.02 0.45 7.62 -51.93 -0.40 0.06 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -32.64 321.60 -8.58 -41.22 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.75 Total: 1.06 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.91 Total: -12.05 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.21 Total: -36.20 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.54 Total: -16.02 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.64 -8.58 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.328 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds