Wall clock time and date at job start Mon Mar 30 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86801 * 119.99580 * 2 1 4 4 H 1.48502 * 109.47194 * 239.99612 * 3 2 1 5 5 H 1.48502 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46872 * 119.99845 * 3 2 1 7 7 C 1.38631 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 180.02562 * 7 2 1 9 9 O 1.34928 * 120.00372 * 359.97438 * 7 2 1 10 10 C 1.42896 * 116.99967 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.52848 * 330.14495 * 10 9 7 12 12 C 1.50722 * 109.58210 * 90.31117 * 10 9 7 13 13 O 1.44232 * 112.85350 * 211.45078 * 12 10 9 14 14 C 1.43937 * 116.11295 * 318.68589 * 13 12 10 15 15 C 1.50736 * 111.88093 * 319.24308 * 14 13 12 16 16 N 1.47600 * 108.44132 * 93.37810 * 15 14 13 17 17 C 1.46906 * 110.99562 * 152.96673 * 16 15 14 18 18 C 1.50702 * 109.47035 * 293.95076 * 17 16 15 19 19 C 1.38230 * 119.99850 * 269.72565 * 18 17 16 20 20 C 1.38243 * 119.99911 * 179.78971 * 19 18 17 21 21 C 1.38238 * 119.99436 * 0.44103 * 20 19 18 22 22 C 1.38233 * 120.00431 * 359.81660 * 21 20 19 23 23 C 1.38234 * 119.99637 * 90.00541 * 18 17 16 24 24 C 1.40456 * 114.43587 * 279.54864 * 16 15 14 25 25 H 0.97001 * 120.00345 * 0.02562 * 1 2 3 26 26 H 1.09004 * 108.80653 * 332.31785 * 12 10 9 27 27 H 1.08999 * 108.80576 * 90.68999 * 12 10 9 28 28 H 1.08994 * 108.99882 * 198.62465 * 14 13 12 29 29 H 1.09000 * 108.99864 * 79.86250 * 14 13 12 30 30 H 1.08998 * 109.63734 * 213.06307 * 15 14 13 31 31 H 1.08994 * 109.64044 * 333.68965 * 15 14 13 32 32 H 1.08995 * 109.46952 * 53.95304 * 17 16 15 33 33 H 1.08998 * 109.47143 * 173.95416 * 17 16 15 34 34 H 1.07995 * 120.00434 * 0.02562 * 19 18 17 35 35 H 1.07999 * 120.00218 * 180.28018 * 20 19 18 36 36 H 1.08007 * 119.99743 * 179.83245 * 21 20 19 37 37 H 1.08000 * 120.00209 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.00592 * 359.97438 * 23 18 17 39 39 H 1.08997 * 109.08753 * 181.76108 * 24 16 15 40 40 H 1.08997 * 109.08778 * 300.81562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1035 1.6965 1.2126 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0005 11 1 3.0584 -3.3878 -0.5119 12 6 2.3815 -3.9954 1.4195 13 8 3.6465 -4.6714 1.5710 14 6 3.9919 -5.6089 0.5348 15 6 2.8037 -6.4277 0.0992 16 7 2.1776 -5.7620 -1.0599 17 6 1.4779 -6.7341 -1.9105 18 6 2.4813 -7.6702 -2.5336 19 6 3.0465 -7.3628 -3.7570 20 6 3.9702 -8.2193 -4.3264 21 6 4.3216 -9.3877 -3.6766 22 6 3.7524 -9.6978 -2.4557 23 6 2.8320 -8.8391 -1.8842 24 6 1.3371 -4.6867 -0.7282 25 1 -0.4851 0.8400 -0.0004 26 1 2.3758 -3.1129 2.0594 27 1 1.5853 -4.6669 1.7408 28 1 4.7673 -6.2786 0.9064 29 1 4.3797 -5.0614 -0.3242 30 1 3.1322 -7.4272 -0.1857 31 1 2.0850 -6.4938 0.9160 32 1 0.7742 -7.3059 -1.3057 33 1 0.9369 -6.2065 -2.6960 34 1 2.7695 -6.4516 -4.2662 35 1 4.4152 -7.9769 -5.2802 36 1 5.0412 -10.0583 -4.1228 37 1 4.0267 -10.6108 -1.9482 38 1 2.3873 -9.0813 -0.9303 39 1 0.8995 -4.2817 -1.6407 40 1 0.5385 -5.0456 -0.0790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224383621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:44 Heat of formation + Delta-G solvation = -56.648791 kcal Electronic energy + Delta-G solvation = -21762.012242 eV Core-core repulsion = 18541.937424 eV Total energy + Delta-G solvation = -3220.074818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23981 -39.91345 -38.05588 -37.37480 -34.18211 -32.90344 -32.07448 -31.63380 -29.73612 -27.45365 -26.79005 -25.61042 -23.47598 -22.36947 -21.98270 -21.53156 -19.76748 -18.08613 -18.05234 -17.53353 -16.78465 -16.66916 -16.37083 -15.83087 -15.77603 -15.72693 -15.33289 -14.86697 -14.48224 -14.29157 -14.20227 -13.70269 -13.41269 -13.39345 -13.24356 -13.01711 -12.79553 -12.42724 -12.34105 -12.11434 -12.05476 -11.82361 -11.72509 -11.51973 -11.24065 -10.62673 -10.12228 -9.74876 -9.66919 -9.30615 -8.20402 -5.90606 0.44811 0.55339 1.38865 1.46380 1.53198 2.26079 2.63109 2.76050 3.09787 3.12311 3.60409 3.81598 3.86067 3.90698 3.98753 4.09431 4.12440 4.20154 4.22512 4.32771 4.38472 4.43863 4.53915 4.61213 4.70012 4.72230 4.81204 4.90103 4.93299 4.99577 5.12866 5.14489 5.20957 5.21302 5.60354 5.67412 5.73988 5.96422 6.04205 6.16777 6.18712 6.29602 7.22479 7.96288 9.03251 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026194 B = 0.004065 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.690651 B = 6886.171002 C = 7247.541088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.035 4.035 3 Si 1.002 2.998 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.377 4.377 8 H 0.067 0.933 9 O -0.316 6.316 10 C 0.071 3.929 11 H 0.043 0.957 12 C 0.055 3.945 13 O -0.406 6.406 14 C 0.057 3.943 15 C 0.027 3.973 16 N -0.552 5.552 17 C 0.101 3.899 18 C -0.086 4.086 19 C -0.116 4.116 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.123 4.123 24 C 0.091 3.909 25 H 0.262 0.738 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.047 0.953 30 H 0.118 0.882 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.932 -20.402 -5.456 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.228 4.228 3 Si 0.824 3.176 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.456 4.456 8 H 0.085 0.915 9 O -0.231 6.231 10 C 0.011 3.989 11 H 0.061 0.939 12 C -0.022 4.022 13 O -0.327 6.327 14 C -0.019 4.019 15 C -0.100 4.100 16 N -0.277 5.277 17 C -0.025 4.025 18 C -0.086 4.086 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.039 4.039 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.066 0.934 30 H 0.135 0.865 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.046 -20.058 -5.539 22.310 hybrid contribution -0.548 0.792 0.271 1.001 sum 7.499 -19.266 -5.268 21.334 Atomic orbital electron populations 1.70171 1.07396 1.27415 1.52995 1.26143 0.96730 1.01695 0.98281 0.84878 0.77341 0.76123 0.79262 1.18968 1.20073 1.19019 1.21253 0.90563 0.83270 1.50530 0.91538 1.85581 1.33241 1.11256 1.93037 1.22189 0.94657 0.87363 0.94648 0.93876 1.22808 0.85536 0.96085 0.97786 1.88218 1.38267 1.57816 1.48357 1.22592 0.97292 0.91168 0.90871 1.22595 0.96585 0.99422 0.91375 1.58962 1.37290 1.09941 1.21513 1.21021 0.93509 0.92023 0.95986 1.19744 0.98414 0.95210 0.95250 1.21192 0.97205 0.99475 0.95598 1.21411 0.97587 0.94858 1.00786 1.21481 1.00104 0.97188 0.95584 1.21426 0.96659 1.00061 0.95992 1.21256 0.98688 0.94089 1.00142 1.20761 0.93170 0.90389 0.99541 0.92909 0.91044 0.92869 0.86478 0.93445 0.86458 0.93475 0.92639 0.90073 0.86514 0.84667 0.83970 0.83806 0.84969 0.91207 0.95707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.62 13.68 21.61 0.30 -59.32 16 2 C -0.03 -2.07 5.49 84.82 0.47 -1.60 16 3 Si 1.00 45.79 29.55 68.60 2.03 47.81 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.38 -22.74 9.67 67.91 0.66 -22.08 16 8 H 0.07 3.84 7.64 -2.91 -0.02 3.82 16 9 O -0.32 -18.58 9.36 -81.97 -0.77 -19.35 16 10 C 0.07 3.27 2.39 30.33 0.07 3.34 16 11 H 0.04 2.09 6.91 -2.39 -0.02 2.07 16 12 C 0.05 2.30 5.98 71.24 0.43 2.73 16 13 O -0.41 -15.39 10.92 -148.98 -1.63 -17.02 16 14 C 0.06 1.69 6.35 71.25 0.45 2.15 16 15 C 0.03 0.70 5.16 85.43 0.44 1.14 16 16 N -0.55 -16.64 4.01 -916.58 -3.68 -20.32 16 17 C 0.10 2.46 5.12 85.56 0.44 2.90 16 18 C -0.09 -1.87 4.99 -19.87 -0.10 -1.97 16 19 C -0.12 -2.54 9.70 22.27 0.22 -2.32 16 20 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 21 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 22 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 23 C -0.12 -2.21 7.91 22.27 0.18 -2.04 16 24 C 0.09 3.45 4.64 87.94 0.41 3.86 16 25 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.07 3.38 7.89 -2.39 -0.02 3.36 16 27 H 0.05 2.07 6.60 -2.39 -0.02 2.06 16 28 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.05 1.57 7.26 -2.39 -0.02 1.55 16 30 H 0.12 2.44 4.74 -2.39 -0.01 2.43 16 31 H 0.05 1.30 6.85 -2.39 -0.02 1.28 16 32 H 0.06 1.23 8.07 -2.39 -0.02 1.21 16 33 H 0.08 2.03 7.71 -2.39 -0.02 2.02 16 34 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.13 1.96 7.44 -2.91 -0.02 1.94 16 39 H 0.07 2.82 7.79 -2.39 -0.02 2.80 16 40 H 0.02 0.93 7.62 -2.39 -0.02 0.91 16 Total: -1.00 -71.94 321.60 1.60 -70.34 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.02 Total: 17.23 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 4.32 Total: -19.38 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -3.38 Total: -79.64 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -2.39 Total: -36.36 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.94 1.60 -70.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.689 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds