Wall clock time and date at job start Mon Mar 30 2020 02:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 116.99983 * 2 1 4 4 C 1.38800 * 120.02665 * 180.02562 * 3 2 1 5 5 C 1.38154 * 120.05490 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.94699 * 180.02562 * 5 4 3 7 7 C 1.38200 * 120.10814 * 359.75162 * 5 4 3 8 8 C 1.38754 * 120.05525 * 0.50140 * 7 5 4 9 9 O 1.35899 * 120.02777 * 179.76803 * 8 7 5 10 10 C 1.42897 * 117.00059 * 353.76361 * 9 8 7 11 11 C 1.53515 * 114.16949 * 201.78087 * 10 9 8 12 12 N 1.47476 * 87.93138 * 220.32873 * 11 10 9 13 13 C 1.46897 * 110.99784 * 138.70588 * 12 11 10 14 14 C 1.50709 * 109.47253 * 170.00244 * 13 12 11 15 15 H 1.08003 * 119.99481 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00234 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99848 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47046 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46923 * 299.99773 * 18 16 14 21 21 H 1.48492 * 109.47165 * 59.99896 * 18 16 14 22 22 C 1.47482 * 87.83800 * 27.00920 * 12 11 10 23 23 C 1.38613 * 120.02958 * 0.02562 * 3 2 1 24 24 H 1.09004 * 109.46469 * 299.99982 * 1 2 3 25 25 H 1.08995 * 109.47172 * 59.99766 * 1 2 3 26 26 H 1.08995 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.97257 * 359.96035 * 4 3 2 28 28 H 1.08999 * 109.47339 * 90.00110 * 6 5 4 29 29 H 1.09005 * 109.47347 * 210.00492 * 6 5 4 30 30 H 1.08997 * 109.46746 * 329.99786 * 6 5 4 31 31 H 1.07997 * 119.97479 * 180.25177 * 7 5 4 32 32 H 1.09000 * 113.38276 * 334.85539 * 10 9 8 33 33 H 1.09002 * 113.47550 * 105.56196 * 11 10 9 34 34 H 1.09003 * 113.47351 * 335.10091 * 11 10 9 35 35 H 1.08999 * 109.47480 * 49.99931 * 13 12 11 36 36 H 1.09004 * 109.47041 * 289.99738 * 13 12 11 37 37 H 0.97003 * 119.99617 * 180.02562 * 17 16 14 38 38 H 1.08999 * 113.47039 * 87.75319 * 22 12 11 39 39 H 1.08994 * 113.47808 * 218.22357 * 22 12 11 40 40 H 1.07996 * 120.04990 * 0.04290 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4320 1.2841 -0.0005 5 6 4.0598 2.5148 -0.0011 6 6 5.5648 2.5915 -0.0022 7 6 3.3099 3.6756 -0.0063 8 6 1.9240 3.6077 -0.0004 9 8 1.1872 4.7495 -0.0008 10 6 1.8994 5.9813 0.1311 11 6 1.0456 7.1493 0.6444 12 7 1.7415 8.0146 -0.3261 13 6 0.8028 8.9412 -0.9728 14 6 1.5736 9.9648 -1.7662 15 1 2.6529 9.9306 -1.7873 16 6 0.9011 10.9454 -2.4640 17 7 -0.4131 10.9873 -2.4377 18 14 1.8566 12.2145 -3.4467 19 1 0.9077 13.1511 -4.1006 20 1 2.7533 12.9722 -2.5372 21 1 2.6684 11.5288 -4.4839 22 6 1.9569 6.8151 -1.1566 23 6 1.2916 2.3737 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0202 0.3784 -0.0003 28 1 5.9269 2.6100 -1.0302 29 1 5.8828 3.4989 0.5114 30 1 5.9733 1.7213 0.5113 31 1 3.8029 4.6365 -0.0108 32 1 2.8591 5.8741 0.6366 33 1 1.2478 7.4113 1.6830 34 1 -0.0184 7.0330 0.4379 35 1 0.2069 9.4449 -0.2117 36 1 0.1447 8.3847 -1.6402 37 1 -0.8863 11.6770 -2.9290 38 1 1.1361 6.6098 -1.8438 39 1 2.9313 6.7940 -1.6444 40 1 0.2131 2.3187 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225333667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:42 Heat of formation + Delta-G solvation = -11.959471 kcal Electronic energy + Delta-G solvation = -20852.553733 eV Core-core repulsion = 17634.416790 eV Total energy + Delta-G solvation = -3218.136943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69339 -39.71396 -38.14327 -36.55794 -32.94771 -32.13806 -30.10066 -29.23098 -27.70709 -26.72868 -25.57534 -25.27417 -22.87859 -21.47257 -21.21941 -19.50934 -18.35545 -16.75431 -16.70511 -16.27661 -16.05475 -15.96167 -15.32827 -14.95623 -14.49294 -14.24506 -13.77373 -13.72952 -13.50439 -13.15881 -12.80891 -12.31336 -12.24157 -12.13351 -12.07150 -11.97412 -11.70459 -11.36774 -11.04933 -10.97158 -10.80389 -10.62152 -10.28555 -9.92300 -9.82059 -9.29428 -8.52453 -8.47507 -8.07715 -8.02035 -6.07065 -4.08905 1.25174 1.41812 3.01555 3.29877 3.32079 3.35652 3.39251 3.65024 4.39789 4.58686 4.71885 4.81317 4.84995 4.95913 4.96881 5.01326 5.06629 5.21028 5.28133 5.28638 5.34715 5.40391 5.47379 5.58876 5.75565 5.81022 5.93549 6.04925 6.14325 6.19450 6.22952 6.34746 6.45828 6.47831 6.56211 7.10757 7.19182 7.54226 7.57142 7.77764 8.02920 8.37595 8.97795 9.55291 11.04034 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.003277 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.679665 B = 8543.394651 C = 9108.381974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.165 3.835 4 C -0.196 4.196 5 C -0.009 4.009 6 C -0.116 4.116 7 C -0.245 4.245 8 C 0.181 3.819 9 O -0.301 6.301 10 C 0.042 3.958 11 C 0.004 3.996 12 N -0.460 5.460 13 C 0.161 3.839 14 C -0.508 4.508 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.900 5.900 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.275 1.275 21 H -0.277 1.277 22 C -0.004 4.004 23 C -0.253 4.253 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.128 0.872 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.006 0.994 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 -20.695 5.961 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.120 3.880 4 C -0.215 4.215 5 C -0.010 4.010 6 C -0.172 4.172 7 C -0.264 4.264 8 C 0.134 3.866 9 O -0.213 6.213 10 C -0.014 4.014 11 C -0.126 4.126 12 N -0.184 5.184 13 C 0.035 3.965 14 C -0.546 4.546 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.729 3.271 19 H -0.213 1.213 20 H -0.201 1.201 21 H -0.202 1.202 22 C -0.133 4.133 23 C -0.272 4.272 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.146 0.854 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.546 -20.284 6.067 21.886 hybrid contribution -0.585 0.614 -0.914 1.247 sum 4.962 -19.669 5.153 20.930 Atomic orbital electron populations 1.23080 0.78227 1.03807 1.01820 1.86062 1.21587 1.26703 1.88558 1.18615 0.91881 0.83448 0.94102 1.20099 0.91065 0.98004 1.12360 1.19440 0.95921 0.91542 0.94061 1.20829 0.90585 1.03014 1.02790 1.21135 0.92672 0.99475 1.13081 1.18690 0.89885 0.86286 0.91689 1.86177 1.36043 1.12808 1.86249 1.24563 0.97016 0.79953 0.99898 1.24038 0.98211 0.90402 0.99900 1.69024 1.35139 1.06012 1.08270 1.20287 0.90680 0.91528 0.93975 1.21040 0.93643 1.11409 1.28529 0.91826 1.25009 0.94933 0.97930 0.96809 1.69948 1.06595 1.34628 1.42725 0.86505 0.79514 0.80983 0.80100 1.21299 1.20094 1.20211 1.24283 1.02905 0.90785 0.95313 1.20373 1.00532 0.89798 1.16544 0.92431 0.92382 0.88282 0.85382 0.90611 0.91082 0.91265 0.84797 0.87282 0.89648 0.90908 0.95032 0.97593 0.92771 0.90734 0.90035 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.58 10.50 -19.42 -0.20 -3.78 16 3 C 0.17 2.07 6.68 -39.24 -0.26 1.81 16 4 C -0.20 -2.31 9.64 -39.40 -0.38 -2.69 16 5 C -0.01 -0.11 5.88 -104.67 -0.61 -0.72 16 6 C -0.12 -0.98 10.01 36.00 0.36 -0.62 16 7 C -0.24 -3.22 8.67 -39.40 -0.34 -3.56 16 8 C 0.18 2.64 6.67 -39.24 -0.26 2.38 16 9 O -0.30 -4.85 10.18 -19.42 -0.20 -5.05 16 10 C 0.04 0.68 4.00 -26.20 -0.10 0.57 16 11 C 0.00 0.06 7.52 -7.54 -0.06 0.01 16 12 N -0.46 -9.96 6.32 -246.11 -1.55 -11.51 16 13 C 0.16 4.22 4.57 -4.97 -0.02 4.20 16 14 C -0.51 -14.48 9.39 -34.44 -0.32 -14.80 16 15 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 18 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.00 -0.07 7.55 -7.54 -0.06 -0.12 16 23 C -0.25 -3.36 8.97 -39.29 -0.35 -3.72 16 24 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.13 1.67 5.92 -52.49 -0.31 1.36 16 32 H 0.11 1.56 6.01 -51.93 -0.31 1.25 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 35 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.01 0.17 7.30 -51.93 -0.38 -0.21 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 38 H 0.07 1.50 7.42 -51.93 -0.39 1.12 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.13 1.61 6.30 -52.49 -0.33 1.28 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -31.42 333.15 -8.59 -40.01 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.84 Total: -0.71 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.52 Total: -14.63 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.82 Total: -37.61 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.40 Total: -8.83 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.42 -8.59 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225333667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.051 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds