Wall clock time and date at job start Mon Mar 30 2020 02:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 116.99983 * 2 1 4 4 C 1.38800 * 120.02665 * 180.02562 * 3 2 1 5 5 C 1.38154 * 120.05490 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.94699 * 180.02562 * 5 4 3 7 7 C 1.38200 * 120.10814 * 359.75162 * 5 4 3 8 8 C 1.38754 * 120.05525 * 0.50140 * 7 5 4 9 9 O 1.35899 * 120.02777 * 179.76803 * 8 7 5 10 10 C 1.42897 * 117.00059 * 353.76361 * 9 8 7 11 11 C 1.53515 * 114.16949 * 201.78087 * 10 9 8 12 12 N 1.47476 * 87.93138 * 220.32873 * 11 10 9 13 13 C 1.46897 * 110.99784 * 138.70588 * 12 11 10 14 14 C 1.50709 * 109.47253 * 170.00244 * 13 12 11 15 15 H 1.08003 * 119.99481 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00234 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99848 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47046 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46923 * 299.99773 * 18 16 14 21 21 H 1.48492 * 109.47165 * 59.99896 * 18 16 14 22 22 C 1.47482 * 87.83800 * 27.00920 * 12 11 10 23 23 C 1.38613 * 120.02958 * 0.02562 * 3 2 1 24 24 H 1.09004 * 109.46469 * 299.99982 * 1 2 3 25 25 H 1.08995 * 109.47172 * 59.99766 * 1 2 3 26 26 H 1.08995 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.97257 * 359.96035 * 4 3 2 28 28 H 1.08999 * 109.47339 * 90.00110 * 6 5 4 29 29 H 1.09005 * 109.47347 * 210.00492 * 6 5 4 30 30 H 1.08997 * 109.46746 * 329.99786 * 6 5 4 31 31 H 1.07997 * 119.97479 * 180.25177 * 7 5 4 32 32 H 1.09000 * 113.38276 * 334.85539 * 10 9 8 33 33 H 1.09002 * 113.47550 * 105.56196 * 11 10 9 34 34 H 1.09003 * 113.47351 * 335.10091 * 11 10 9 35 35 H 1.08999 * 109.47480 * 49.99931 * 13 12 11 36 36 H 1.09004 * 109.47041 * 289.99738 * 13 12 11 37 37 H 0.97003 * 119.99617 * 180.02562 * 17 16 14 38 38 H 1.08999 * 113.47039 * 87.75319 * 22 12 11 39 39 H 1.08994 * 113.47808 * 218.22357 * 22 12 11 40 40 H 1.07996 * 120.04990 * 0.04290 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4320 1.2841 -0.0005 5 6 4.0598 2.5148 -0.0011 6 6 5.5648 2.5915 -0.0022 7 6 3.3099 3.6756 -0.0063 8 6 1.9240 3.6077 -0.0004 9 8 1.1872 4.7495 -0.0008 10 6 1.8994 5.9813 0.1311 11 6 1.0456 7.1493 0.6444 12 7 1.7415 8.0146 -0.3261 13 6 0.8028 8.9412 -0.9728 14 6 1.5736 9.9648 -1.7662 15 1 2.6529 9.9306 -1.7873 16 6 0.9011 10.9454 -2.4640 17 7 -0.4131 10.9873 -2.4377 18 14 1.8566 12.2145 -3.4467 19 1 0.9077 13.1511 -4.1006 20 1 2.7533 12.9722 -2.5372 21 1 2.6684 11.5288 -4.4839 22 6 1.9569 6.8151 -1.1566 23 6 1.2916 2.3737 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0202 0.3784 -0.0003 28 1 5.9269 2.6100 -1.0302 29 1 5.8828 3.4989 0.5114 30 1 5.9733 1.7213 0.5113 31 1 3.8029 4.6365 -0.0108 32 1 2.8591 5.8741 0.6366 33 1 1.2478 7.4113 1.6830 34 1 -0.0184 7.0330 0.4379 35 1 0.2069 9.4449 -0.2117 36 1 0.1447 8.3847 -1.6402 37 1 -0.8863 11.6770 -2.9290 38 1 1.1361 6.6098 -1.8438 39 1 2.9313 6.7940 -1.6444 40 1 0.2131 2.3187 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225333667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:42 Heat of formation + Delta-G solvation = -33.303316 kcal Electronic energy + Delta-G solvation = -20853.479272 eV Core-core repulsion = 17634.416790 eV Total energy + Delta-G solvation = -3219.062482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.85312 -40.89141 -39.29429 -37.63170 -35.06313 -33.08919 -31.33124 -30.77720 -28.54492 -27.61255 -27.16754 -26.89043 -24.35488 -22.75263 -22.39194 -20.92461 -19.44057 -18.56933 -17.69037 -17.66182 -17.13392 -16.85108 -16.67757 -16.42811 -16.17821 -15.58966 -14.99120 -14.76607 -14.37661 -14.35075 -14.17406 -13.91635 -13.77137 -13.38948 -13.02474 -12.96295 -12.81034 -12.73377 -12.52411 -12.38730 -12.18695 -12.00964 -11.89494 -11.67128 -11.29233 -11.10490 -10.64333 -9.84938 -9.47760 -9.06050 -8.25709 -6.36806 0.31081 0.42218 1.39573 1.43196 1.51353 1.97643 2.34834 2.39173 2.67942 3.06511 3.21354 3.31521 3.74842 3.80195 3.94842 4.11671 4.15813 4.30421 4.32152 4.36283 4.39929 4.47838 4.54189 4.57932 4.64143 4.71672 4.75153 4.80160 4.86506 4.87139 5.00923 5.10817 5.29022 5.30889 5.50208 5.58277 5.65033 5.68836 5.98928 6.26042 6.32073 6.45899 6.76666 7.32916 8.85638 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.003277 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.679665 B = 8543.394651 C = 9108.381974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.160 3.840 4 C -0.199 4.199 5 C -0.009 4.009 6 C -0.115 4.115 7 C -0.254 4.254 8 C 0.155 3.845 9 O -0.315 6.315 10 C 0.072 3.928 11 C 0.000 4.000 12 N -0.472 5.472 13 C 0.176 3.824 14 C -0.530 4.530 15 H 0.063 0.937 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.974 3.026 19 H -0.281 1.281 20 H -0.266 1.266 21 H -0.267 1.267 22 C -0.009 4.009 23 C -0.263 4.263 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.126 0.874 27 H 0.147 0.853 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.006 0.994 36 H -0.021 1.021 37 H 0.266 0.734 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 -21.788 6.096 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.114 3.886 4 C -0.218 4.218 5 C -0.009 4.009 6 C -0.171 4.171 7 C -0.272 4.272 8 C 0.110 3.890 9 O -0.228 6.228 10 C 0.015 3.985 11 C -0.129 4.129 12 N -0.196 5.196 13 C 0.049 3.951 14 C -0.568 4.568 15 H 0.081 0.919 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.206 1.206 20 H -0.191 1.191 21 H -0.192 1.192 22 C -0.138 4.138 23 C -0.283 4.283 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.144 0.856 27 H 0.165 0.835 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.024 0.976 36 H -0.003 1.003 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.482 -21.406 6.214 23.512 hybrid contribution -1.221 0.787 -0.927 1.723 sum 6.261 -20.619 5.287 22.188 Atomic orbital electron populations 1.23345 0.76572 1.05704 1.02042 1.86057 1.23329 1.26065 1.88319 1.18795 0.92414 0.83594 0.93817 1.20447 0.91036 0.98925 1.11369 1.19798 0.97554 0.90863 0.92667 1.20909 0.88270 1.04221 1.03715 1.21284 0.92171 1.00440 1.13345 1.18936 0.90660 0.85892 0.93558 1.86136 1.36599 1.13165 1.86863 1.24233 0.97292 0.79680 0.97289 1.24095 0.97832 0.90714 1.00246 1.68908 1.34255 1.07010 1.09422 1.19945 0.90645 0.91800 0.92727 1.21386 0.93793 1.12348 1.29238 0.91924 1.25972 0.95911 1.00084 0.97771 1.70077 1.08314 1.35538 1.43553 0.85372 0.78168 0.78111 0.78607 1.20645 1.19099 1.19195 1.24298 1.02631 0.90502 0.96364 1.20510 1.01067 0.89833 1.16844 0.92036 0.92351 0.85605 0.83500 0.89684 0.90431 0.89533 0.84260 0.84768 0.87410 0.91964 0.97568 1.00277 0.92504 0.92669 0.88954 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -6.87 10.50 -92.40 -0.97 -7.84 16 3 C 0.16 3.80 6.68 22.49 0.15 3.95 16 4 C -0.20 -4.27 9.64 22.38 0.22 -4.06 16 5 C -0.01 -0.18 5.88 -19.89 -0.12 -0.30 16 6 C -0.11 -1.61 10.01 71.24 0.71 -0.90 16 7 C -0.25 -6.29 8.67 22.38 0.19 -6.10 16 8 C 0.16 4.42 6.67 22.49 0.15 4.57 16 9 O -0.31 -10.11 10.18 -92.41 -0.94 -11.05 16 10 C 0.07 2.25 4.00 30.94 0.12 2.38 16 11 C 0.00 0.00 7.52 83.58 0.63 0.63 16 12 N -0.47 -20.75 6.32 -932.94 -5.89 -26.64 16 13 C 0.18 9.57 4.57 85.56 0.39 9.96 16 14 C -0.53 -30.75 9.39 25.60 0.24 -30.51 16 15 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 18 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 C -0.01 -0.33 7.55 83.58 0.63 0.30 16 23 C -0.26 -6.86 8.97 22.46 0.20 -6.66 16 24 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 25 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 26 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.01 8.09 -2.38 -0.02 0.99 16 30 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.14 3.20 5.92 -2.91 -0.02 3.18 16 32 H 0.14 3.57 6.01 -2.39 -0.01 3.56 16 33 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.06 2.37 7.91 -2.39 -0.02 2.35 16 35 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 36 H -0.02 -1.20 7.30 -2.38 -0.02 -1.22 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.06 2.32 7.42 -2.39 -0.02 2.30 16 39 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.14 3.31 6.30 -2.91 -0.02 3.29 16 Total: -1.00 -68.32 333.15 0.63 -67.69 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.03 Total: 12.66 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 5.10 Total: -24.86 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -5.61 Total: -83.23 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.91 Total: -18.89 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.32 0.63 -67.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225333667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.384 kcal (2) G-P(sol) polarization free energy of solvation -68.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds