Wall clock time and date at job start Mon Mar 30 2020 01:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48497 * 109.46987 * 270.00238 * 3 2 1 5 5 H 1.48504 * 109.46733 * 29.99616 * 3 2 1 6 6 H 1.48495 * 109.47090 * 149.99797 * 3 2 1 7 7 C 1.39955 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99413 * 194.80864 * 7 2 1 9 9 C 1.41388 * 120.00261 * 14.80930 * 7 2 1 10 10 C 1.40738 * 120.24489 * 28.17693 * 9 7 2 11 11 C 1.37596 * 119.74456 * 180.31756 * 10 9 7 12 12 C 1.38653 * 120.24879 * 359.66340 * 11 10 9 13 13 C 1.38608 * 120.50250 * 0.02562 * 12 11 10 14 14 C 1.37642 * 120.24686 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.12498 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47092 * 101.35623 * 15 14 13 17 17 C 1.48532 * 111.00003 * 283.10192 * 16 15 14 18 18 C 1.54942 * 103.22491 * 200.27840 * 17 16 15 19 19 H 1.08998 * 110.72228 * 279.05517 * 18 17 16 20 20 O 1.42897 * 110.71850 * 155.77542 * 18 17 16 21 21 C 1.54592 * 102.92352 * 37.41572 * 18 17 16 22 22 H 1.08999 * 110.31143 * 96.95565 * 21 18 17 23 23 C 1.52999 * 110.39214 * 219.08410 * 21 18 17 24 24 O 1.42900 * 109.46837 * 183.55508 * 23 21 18 25 25 C 1.47899 * 110.99850 * 165.70413 * 16 15 14 26 26 H 0.96993 * 119.99999 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.12696 * 0.02562 * 10 9 7 28 28 H 1.08006 * 119.87454 * 179.68132 * 11 10 9 29 29 H 1.08005 * 119.75179 * 180.02562 * 12 11 10 30 30 H 1.07999 * 119.87634 * 180.02562 * 13 12 11 31 31 H 1.08997 * 109.47401 * 341.35573 * 15 14 13 32 32 H 1.09003 * 109.46674 * 221.35478 * 15 14 13 33 33 H 1.08997 * 110.67029 * 318.71493 * 17 16 15 34 34 H 1.09003 * 110.66603 * 81.84508 * 17 16 15 35 35 H 0.96698 * 114.00385 * 66.50419 * 20 18 17 36 36 H 1.08998 * 109.46687 * 303.55048 * 23 21 18 37 37 H 1.09000 * 109.47115 * 63.55371 * 23 21 18 38 38 H 0.96699 * 113.99834 * 180.02562 * 24 23 21 39 39 H 1.08992 * 109.91893 * 26.49509 * 25 16 15 40 40 H 1.09002 * 110.08623 * 265.28657 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4401 0.7001 7 6 2.0080 -1.2121 -0.0005 8 1 3.0610 -1.2277 0.2385 9 6 1.3362 -2.4161 -0.3140 10 6 0.2138 -2.4013 -1.1630 11 6 -0.4361 -3.5781 -1.4560 12 6 0.0152 -4.7764 -0.9239 13 6 1.1234 -4.8037 -0.0919 14 6 1.7884 -3.6385 0.2156 15 6 2.9927 -3.6713 1.1210 16 7 4.2160 -3.5870 0.3120 17 6 4.5176 -4.8898 -0.3344 18 6 6.0257 -4.7777 -0.6714 19 1 6.1745 -4.2101 -1.5899 20 8 6.6184 -6.0738 -0.7746 21 6 6.5955 -4.0107 0.5440 22 1 7.0197 -4.7080 1.2664 23 6 7.6566 -3.0060 0.0907 24 8 8.2280 -2.3682 1.2346 25 6 5.3893 -3.2745 1.1564 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1389 -1.4691 -1.5790 28 1 -1.3007 -3.5685 -2.1031 29 1 -0.5008 -5.6955 -1.1596 30 1 1.4664 -5.7428 0.3166 31 1 2.9957 -4.6021 1.6882 32 1 2.9531 -2.8267 1.8090 33 1 4.3381 -5.7131 0.3571 34 1 3.9285 -5.0140 -1.2431 35 1 6.2949 -6.5959 -1.5215 36 1 8.4376 -3.5275 -0.4626 37 1 7.1956 -2.2555 -0.5514 38 1 8.9100 -1.7165 1.0218 39 1 5.2182 -3.6249 2.1742 40 1 5.5728 -2.2001 1.1596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235517343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:37 Heat of formation + Delta-G solvation = -77.232313 kcal Electronic energy + Delta-G solvation = -21924.887581 eV Core-core repulsion = 18703.920195 eV Total energy + Delta-G solvation = -3220.967386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.40610 -37.60116 -36.55071 -35.63757 -33.55175 -32.22002 -29.83035 -29.30326 -28.14033 -25.84781 -24.84382 -23.52998 -21.23470 -20.82772 -19.98059 -19.43454 -17.61061 -17.14987 -17.05731 -15.51969 -15.42458 -15.13790 -14.53584 -14.28502 -14.05738 -13.93221 -13.43468 -13.07279 -12.79205 -12.56247 -12.47599 -12.29155 -11.63383 -11.50983 -11.30419 -11.17376 -11.02263 -10.92622 -10.75985 -10.51506 -10.45024 -10.33086 -9.94528 -9.86664 -9.45046 -9.23823 -9.13330 -7.83166 -7.32485 -7.24431 -6.67507 -4.27181 2.82311 2.99428 3.11679 3.15692 3.29008 3.88912 3.99859 4.31216 4.66390 4.75693 4.82030 4.97215 5.05700 5.36497 5.41628 5.52329 5.71362 5.78214 5.90008 5.92218 5.99503 6.13597 6.19865 6.26954 6.30280 6.39001 6.52149 6.52929 6.88166 7.15120 7.29833 7.36364 7.45289 7.59067 7.60189 7.65278 7.71911 7.96908 8.11968 8.19688 8.37824 8.73539 9.00076 9.06838 10.28069 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.006770 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.827026 B = 4134.826366 C = 5778.935030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.448 4.448 8 H 0.089 0.911 9 C 0.131 3.869 10 C -0.161 4.161 11 C -0.107 4.107 12 C -0.244 4.244 13 C -0.087 4.087 14 C -0.189 4.189 15 C 0.118 3.882 16 N -0.496 5.496 17 C 0.013 3.987 18 C 0.104 3.896 19 H 0.073 0.927 20 O -0.567 6.567 21 C -0.090 4.090 22 H 0.087 0.913 23 C 0.087 3.913 24 O -0.572 6.572 25 C 0.046 3.954 26 H 0.278 0.722 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.020 0.980 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.379 0.621 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.377 0.623 39 H 0.042 0.958 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.973 -4.311 -1.348 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.478 4.478 8 H 0.107 0.893 9 C 0.129 3.871 10 C -0.180 4.180 11 C -0.126 4.126 12 C -0.263 4.263 13 C -0.106 4.106 14 C -0.191 4.191 15 C -0.009 4.009 16 N -0.221 5.221 17 C -0.115 4.115 18 C 0.044 3.956 19 H 0.091 0.909 20 O -0.372 6.372 21 C -0.109 4.109 22 H 0.105 0.895 23 C 0.009 3.991 24 O -0.377 6.377 25 C -0.082 4.082 26 H 0.089 0.911 27 H 0.132 0.868 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.227 0.773 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.224 0.776 39 H 0.060 0.940 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.581 -3.913 -0.845 11.313 hybrid contribution 0.320 0.303 -0.212 0.488 sum 10.900 -3.611 -1.057 11.531 Atomic orbital electron populations 1.69828 1.07520 1.28929 1.36393 1.25951 0.94673 1.01228 0.92526 0.86368 0.80572 0.80925 0.79167 1.19492 1.20603 1.18584 1.19703 0.97542 0.90258 1.40290 0.89323 1.17371 0.90395 0.91562 0.87820 1.21313 0.99250 0.96411 1.01030 1.20669 0.98561 0.93562 0.99823 1.20286 1.01795 0.96277 1.07985 1.20357 0.96247 0.95622 0.98405 1.19444 0.99819 0.93897 1.05951 1.20819 0.87566 0.98913 0.93584 1.64842 1.01692 1.26730 1.28820 1.23803 0.94945 0.92183 1.00594 1.22692 0.91751 0.83506 0.97633 0.90923 1.86465 1.68074 1.28416 1.54202 1.21911 0.95439 0.96202 0.97366 0.89472 1.22200 0.94767 0.94635 0.87498 1.86478 1.58463 1.59303 1.33491 1.22864 0.89016 1.01048 0.95308 0.91139 0.86795 0.89743 0.89872 0.90066 0.96219 0.90465 0.93548 0.89649 0.77335 0.93741 0.92764 0.77603 0.93981 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.75 11.03 55.55 0.61 -20.14 16 2 C 0.07 1.82 5.18 -17.34 -0.09 1.73 16 3 Si 0.90 18.90 29.58 -169.99 -5.03 13.87 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.45 -11.59 8.15 -37.74 -0.31 -11.90 16 8 H 0.09 2.25 6.87 -52.49 -0.36 1.89 16 9 C 0.13 3.42 5.54 -106.83 -0.59 2.83 16 10 C -0.16 -4.18 8.67 -38.87 -0.34 -4.52 16 11 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 12 C -0.24 -5.50 10.05 -39.29 -0.39 -5.90 16 13 C -0.09 -1.95 9.65 -39.66 -0.38 -2.33 16 14 C -0.19 -4.44 5.18 -103.91 -0.54 -4.98 16 15 C 0.12 2.42 4.06 -4.97 -0.02 2.40 16 16 N -0.50 -9.20 4.85 -231.89 -1.13 -10.33 16 17 C 0.01 0.22 5.97 -1.90 -0.01 0.20 16 18 C 0.10 1.42 3.99 -24.87 -0.10 1.32 16 19 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 20 O -0.57 -7.09 13.40 -35.23 -0.47 -7.56 16 21 C -0.09 -1.29 3.03 -89.26 -0.27 -1.56 16 22 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 23 C 0.09 1.07 6.10 37.16 0.23 1.30 16 24 O -0.57 -7.05 13.47 -35.23 -0.47 -7.53 16 25 C 0.05 0.75 6.16 -2.75 -0.02 0.74 16 26 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 27 H 0.11 3.07 6.33 -52.48 -0.33 2.74 16 28 H 0.08 1.81 8.06 -52.48 -0.42 1.38 16 29 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.08 1.62 8.02 -52.49 -0.42 1.20 16 31 H 0.02 0.38 7.58 -51.93 -0.39 -0.01 16 32 H 0.08 1.67 7.32 -51.93 -0.38 1.29 16 33 H 0.05 0.75 7.75 -51.93 -0.40 0.35 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.38 3.14 9.12 45.56 0.42 3.55 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.38 2.81 9.12 45.56 0.42 3.22 16 39 H 0.04 0.69 7.77 -51.93 -0.40 0.28 16 40 H 0.08 1.45 7.63 -51.93 -0.40 1.06 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -29.57 327.69 -9.12 -38.69 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -4.34 Total: 11.69 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -3.23 Total: -23.62 kcal Atomic # 7 Polarization: -29.96 SS G_CDS: -0.51 Total: -30.47 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.95 Total: -15.09 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.57 -9.12 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235517343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.543 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds