Wall clock time and date at job start Mon Mar 30 2020 01:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.46936 * 2 1 4 4 C 1.46899 * 110.99625 * 297.97806 * 3 2 1 5 5 C 1.50703 * 109.47206 * 292.93101 * 4 3 2 6 6 H 1.08007 * 119.99750 * 354.97899 * 5 4 3 7 7 C 1.37870 * 120.00463 * 174.96691 * 5 4 3 8 8 N 1.31516 * 119.99738 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00497 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47284 * 90.00016 * 9 7 5 11 11 H 1.48494 * 109.47338 * 210.00477 * 9 7 5 12 12 H 1.48503 * 109.46674 * 330.00482 * 9 7 5 13 13 C 1.46896 * 110.99904 * 61.92712 * 3 2 1 14 14 C 1.50702 * 109.47053 * 66.04629 * 13 3 2 15 15 N 1.30084 * 124.95376 * 275.03544 * 14 13 3 16 16 C 1.35835 * 109.63826 * 179.97438 * 15 14 13 17 17 C 1.39742 * 133.55074 * 180.02562 * 16 15 14 18 18 C 1.36582 * 119.92217 * 180.25506 * 17 16 15 19 19 C 1.38988 * 120.63575 * 359.42972 * 18 17 16 20 20 F 1.35102 * 119.79819 * 180.29259 * 19 18 17 21 21 C 1.38046 * 120.39620 * 0.60477 * 19 18 17 22 22 C 1.38826 * 119.67730 * 359.68703 * 21 19 18 23 23 N 1.36097 * 124.94998 * 94.99987 * 14 13 3 24 24 H 0.96998 * 126.35014 * 0.02562 * 23 14 13 25 25 H 1.08991 * 109.47539 * 59.67625 * 1 2 3 26 26 H 1.08998 * 109.46567 * 179.67438 * 1 2 3 27 27 H 1.09001 * 109.46989 * 299.66828 * 1 2 3 28 28 H 1.08996 * 109.46878 * 240.00336 * 2 1 3 29 29 H 1.09000 * 109.47663 * 119.99647 * 2 1 3 30 30 H 1.08993 * 109.48094 * 52.93695 * 4 3 2 31 31 H 1.09007 * 109.47024 * 172.94338 * 4 3 2 32 32 H 0.97006 * 120.00199 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47611 * 306.04850 * 13 3 2 34 34 H 1.09000 * 109.47311 * 186.05111 * 13 3 2 35 35 H 1.08003 * 120.03747 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.68484 * 179.72359 * 18 17 16 37 37 H 1.08004 * 120.16226 * 179.66375 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5885 2.0958 -1.2112 5 6 2.2706 1.4974 -2.4144 6 1 3.0162 0.7267 -2.2848 7 6 1.9427 1.9334 -3.6806 8 7 1.0351 2.8720 -3.8384 9 14 2.7877 1.1912 -5.1721 10 1 2.0134 0.0159 -5.6459 11 1 2.8612 2.2048 -6.2549 12 1 4.1603 0.7627 -4.8011 13 6 1.5866 2.0965 1.2101 14 6 2.2475 1.4826 2.4173 15 7 1.8031 0.4444 3.0630 16 6 2.6375 0.1576 4.0958 17 6 2.6398 -0.8279 5.0866 18 6 3.6395 -0.8565 6.0167 19 6 4.6659 0.0800 5.9824 20 9 5.6495 0.0324 6.9073 21 6 4.6828 1.0625 5.0128 22 6 3.6707 1.1090 4.0636 23 7 3.3968 1.9330 2.9905 24 1 3.9252 2.6925 2.6992 25 1 -0.3634 0.5188 -0.8870 26 1 -0.3632 -1.0277 -0.0058 27 1 -0.3633 0.5087 0.8930 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5082 2.0026 -1.3222 31 1 1.8557 3.1494 -1.1288 32 1 0.8046 3.1791 -4.7292 33 1 0.5040 2.0185 1.3096 34 1 1.8699 3.1464 1.1353 35 1 1.8494 -1.5632 5.1195 36 1 3.6351 -1.6171 6.7834 37 1 5.4793 1.7917 4.9929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235691747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:30 Heat of formation + Delta-G solvation = 30.013079 kcal Electronic energy + Delta-G solvation = -20823.602840 eV Core-core repulsion = 17516.118409 eV Total energy + Delta-G solvation = -3307.484431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.98637 -42.14022 -37.73686 -36.64879 -33.16479 -32.67283 -30.57819 -29.90936 -29.16252 -27.37576 -25.14585 -23.26104 -22.75908 -22.15159 -20.98178 -19.44075 -18.29659 -17.45815 -16.56064 -16.20380 -15.89843 -15.43107 -15.38282 -15.06425 -14.51398 -14.16633 -13.98126 -13.86401 -13.19251 -13.13938 -12.91730 -12.15695 -11.80415 -11.61848 -11.60420 -11.52962 -11.21657 -10.95608 -10.78656 -10.70095 -10.51390 -10.04941 -9.99160 -9.78474 -9.31240 -8.55941 -8.49387 -8.07632 -7.35655 -6.08816 -4.09965 0.74119 1.28311 2.68187 2.85531 3.28612 3.35224 3.39305 3.66250 4.10041 4.22606 4.38501 4.50161 4.83278 5.00731 5.08901 5.16956 5.22856 5.27577 5.57077 5.67932 5.77683 5.84300 5.94119 6.02276 6.07211 6.20385 6.24321 6.41553 6.56875 6.68903 6.72858 6.97172 7.17942 7.30580 7.36869 7.71820 7.90700 7.97816 8.07896 8.42581 8.97644 9.54503 11.01746 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.031475 B = 0.003608 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.367377 B = 7758.448932 C = 8011.944013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.059 3.941 3 N -0.531 5.531 4 C 0.189 3.811 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.116 3.884 14 C 0.325 3.675 15 N -0.487 5.487 16 C 0.043 3.957 17 C -0.035 4.035 18 C -0.162 4.162 19 C 0.105 3.895 20 F -0.140 7.140 21 C -0.144 4.144 22 C 0.066 3.934 23 N -0.588 5.588 24 H 0.426 0.574 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.009 0.991 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -3.089 17.280 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.069 4.069 3 N -0.256 5.256 4 C 0.064 3.936 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.014 4.014 14 C 0.057 3.943 15 N -0.208 5.208 16 C -0.076 4.076 17 C -0.055 4.055 18 C -0.183 4.183 19 C 0.084 3.916 20 F -0.118 7.118 21 C -0.166 4.166 22 C -0.046 4.046 23 N -0.198 5.198 24 H 0.265 0.735 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.259 -3.484 16.983 17.641 hybrid contribution 0.769 0.572 -0.722 1.200 sum 4.028 -2.912 16.262 17.004 Atomic orbital electron populations 1.22302 0.98916 1.01243 1.01714 1.22019 0.92660 0.90395 1.01853 1.62434 1.59315 1.02642 1.01183 1.19838 0.95275 0.93532 0.84908 1.21093 1.22019 1.21425 0.89895 0.91901 1.24959 0.95268 0.95206 0.99041 1.69947 1.31961 1.29054 1.22815 0.86510 0.79984 0.78794 0.82226 1.20679 1.21277 1.19817 1.20699 0.97643 0.97310 0.85797 1.23894 0.84101 0.91151 0.95119 1.70546 1.28821 1.14180 1.07242 1.19207 0.93522 0.97508 0.97386 1.19831 0.97990 0.96297 0.91376 1.20555 0.95033 1.00764 1.01976 1.17100 0.87880 0.97446 0.89159 1.91488 1.60292 1.96105 1.63932 1.19665 0.99795 1.01465 0.95719 1.18417 0.98652 0.95195 0.92316 1.43130 1.23610 1.28338 1.24717 0.73458 0.91640 0.93353 0.93236 0.90246 0.91903 0.97296 0.95608 0.92879 0.91076 0.89276 0.84369 0.84322 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 9.26 37.16 0.34 -2.98 16 2 C 0.06 1.15 5.68 -3.82 -0.02 1.13 16 3 N -0.53 -10.65 4.69 -237.51 -1.11 -11.77 16 4 C 0.19 4.54 4.53 -4.98 -0.02 4.52 16 5 C -0.51 -13.55 8.40 -34.44 -0.29 -13.84 16 6 H 0.06 1.70 7.38 -52.48 -0.39 1.31 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.12 1.90 5.38 -4.98 -0.03 1.87 16 14 C 0.32 5.06 6.86 -154.79 -1.06 3.99 16 15 N -0.49 -8.01 10.13 -8.22 -0.08 -8.09 16 16 C 0.04 0.63 7.23 -84.68 -0.61 0.02 16 17 C -0.04 -0.42 10.05 -39.62 -0.40 -0.82 16 18 C -0.16 -1.71 9.94 -39.90 -0.40 -2.11 16 19 C 0.11 1.21 7.29 -39.37 -0.29 0.92 16 20 F -0.14 -1.60 17.26 2.25 0.04 -1.56 16 21 C -0.14 -1.69 10.05 -39.43 -0.40 -2.08 16 22 C 0.07 0.90 7.30 -84.00 -0.61 0.28 16 23 N -0.59 -7.76 6.23 -8.00 -0.05 -7.81 16 24 H 0.43 4.43 8.96 -40.82 -0.37 4.07 16 25 H 0.06 1.33 6.28 -51.93 -0.33 1.01 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.85 6.33 -51.93 -0.33 0.52 16 28 H 0.08 1.69 6.98 -51.93 -0.36 1.32 16 29 H 0.06 1.19 6.39 -51.93 -0.33 0.86 16 30 H 0.01 0.24 6.01 -51.93 -0.31 -0.08 16 31 H 0.03 0.65 7.91 -51.92 -0.41 0.24 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 33 H 0.07 1.17 6.07 -51.93 -0.32 0.85 16 34 H 0.09 1.31 7.92 -51.93 -0.41 0.90 16 35 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -29.72 310.74 -9.07 -38.78 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.38 Total: 2.22 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.88 Total: -7.64 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.51 Total: -52.57 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.72 -9.07 -38.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235691747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.798 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds