Wall clock time and date at job start Mon Mar 30 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86805 * 119.99735 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00042 * 3 2 1 5 5 H 1.48493 * 109.47037 * 30.00245 * 3 2 1 6 6 H 1.48499 * 109.46776 * 150.00567 * 3 2 1 7 7 C 1.38656 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00012 * 359.97438 * 7 2 1 9 9 O 1.34834 * 119.99678 * 179.97438 * 7 2 1 10 10 C 1.35750 * 116.99697 * 185.06421 * 9 7 2 11 11 C 1.38905 * 120.07095 * 354.39435 * 10 9 7 12 12 C 1.38078 * 119.93031 * 180.31813 * 11 10 9 13 13 C 1.38325 * 120.07219 * 359.68868 * 12 11 10 14 14 C 1.38281 * 120.13446 * 359.97438 * 13 12 11 15 15 C 1.38127 * 120.07020 * 0.04441 * 14 13 12 16 16 C 1.50698 * 120.03458 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.46910 * 265.00104 * 16 15 14 18 18 C 1.52998 * 109.46734 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.46734 * 180.02562 * 18 17 16 20 20 C 1.53006 * 109.46956 * 180.02562 * 19 18 17 21 21 C 1.50693 * 109.47163 * 180.02562 * 20 19 18 22 22 N 1.34776 * 120.00278 * 180.02562 * 21 20 19 23 23 O 1.21287 * 120.00159 * 359.97438 * 21 20 19 24 24 H 0.96995 * 119.99912 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.03563 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.96249 * 179.70485 * 12 11 10 27 27 H 1.07991 * 119.93424 * 180.02562 * 13 12 11 28 28 H 1.08000 * 119.96304 * 180.02562 * 14 13 12 29 29 H 1.09007 * 109.47209 * 24.99862 * 16 15 14 30 30 H 1.08991 * 109.47547 * 144.99998 * 16 15 14 31 31 H 1.08997 * 109.46997 * 299.99900 * 17 16 15 32 32 H 1.08995 * 109.46862 * 60.00077 * 17 16 15 33 33 H 1.08997 * 109.47256 * 299.99691 * 18 17 16 34 34 H 1.08991 * 109.47676 * 59.99923 * 18 17 16 35 35 H 1.08997 * 109.46997 * 299.99850 * 19 18 17 36 36 H 1.08995 * 109.47321 * 60.00297 * 19 18 17 37 37 H 1.08997 * 109.47144 * 299.99759 * 20 19 18 38 38 H 1.09001 * 109.47214 * 59.99402 * 20 19 18 39 39 H 0.97001 * 120.00039 * 359.97438 * 22 21 20 40 40 H 0.97004 * 120.00055 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.6999 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4054 -0.1083 11 6 3.2236 -3.5746 -0.0940 12 6 3.8540 -4.7987 -0.1967 13 6 5.2303 -4.8614 -0.3202 14 6 5.9790 -3.6991 -0.3418 15 6 5.3543 -2.4714 -0.2391 16 6 6.1711 -1.2052 -0.2621 17 6 6.4687 -0.7641 1.1725 18 6 7.2974 0.5217 1.1490 19 6 7.5956 0.9624 2.5836 20 6 8.4238 2.2487 2.5603 21 6 8.7180 2.6825 3.9731 22 7 9.4387 3.7987 4.1992 23 8 8.3055 2.0276 4.9069 24 1 -0.4850 0.8400 0.0004 25 1 2.1489 -3.5264 0.0021 26 1 3.2718 -5.7083 -0.1809 27 1 5.7210 -5.8200 -0.4008 28 1 7.0534 -3.7512 -0.4388 29 1 7.1084 -1.3869 -0.7882 30 1 5.6128 -0.4219 -0.7746 31 1 5.5315 -0.5825 1.6985 32 1 7.0271 -1.5475 1.6849 33 1 8.2346 0.3405 0.6229 34 1 6.7387 1.3049 0.6367 35 1 6.6586 1.1436 3.1102 36 1 8.1546 0.1792 3.0956 37 1 9.3608 2.0681 2.0335 38 1 7.8645 3.0318 2.0483 39 1 9.7683 4.3227 3.4524 40 1 9.6284 4.0777 5.1087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250272727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:38 Heat of formation + Delta-G solvation = -74.629003 kcal Electronic energy + Delta-G solvation = -20811.549269 eV Core-core repulsion = 17590.694771 eV Total energy + Delta-G solvation = -3220.854498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.65312 -39.29300 -36.62332 -35.73381 -33.88211 -32.90253 -32.29928 -29.87392 -29.05000 -26.44095 -25.19284 -23.07905 -21.41764 -20.98936 -20.52216 -20.12148 -17.79656 -17.49416 -17.05646 -16.73783 -16.07160 -15.13594 -14.94930 -14.52518 -14.18387 -13.91982 -13.82745 -13.67982 -13.09612 -13.01883 -12.74069 -12.34005 -12.19443 -11.81974 -11.74733 -11.46405 -11.10238 -10.85685 -10.84261 -10.68839 -10.54757 -10.47705 -10.15947 -10.10224 -10.00865 -9.92646 -9.32207 -8.85160 -8.05827 -7.29045 -6.39254 -4.05285 2.12640 2.32705 2.47587 3.22361 3.25267 3.33120 3.40249 4.24882 4.51005 4.67216 4.81329 4.89721 4.94519 5.12069 5.33848 5.35638 5.44322 5.54228 5.56411 5.76344 5.79512 5.87523 6.02024 6.07813 6.13649 6.23002 6.31360 6.36235 6.41612 6.53668 6.60261 6.67899 6.78212 6.90967 7.07859 7.21418 7.25166 7.37092 7.66553 7.83417 8.06705 8.07805 8.96584 9.59768 10.68737 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.004926 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.820000 B = 5683.301028 C = 7430.107481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.388 4.388 8 H 0.105 0.895 9 O -0.212 6.212 10 C 0.162 3.838 11 C -0.221 4.221 12 C -0.081 4.081 13 C -0.205 4.205 14 C -0.078 4.078 15 C -0.155 4.155 16 C -0.061 4.061 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.106 4.106 20 C -0.142 4.142 21 C 0.514 3.486 22 N -0.862 5.862 23 O -0.541 6.541 24 H 0.279 0.721 25 H 0.132 0.868 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.400 0.600 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.945 4.409 1.650 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.464 4.464 8 H 0.122 0.878 9 O -0.118 6.118 10 C 0.110 3.890 11 C -0.240 4.240 12 C -0.099 4.099 13 C -0.224 4.224 14 C -0.097 4.097 15 C -0.157 4.157 16 C -0.099 4.099 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.144 4.144 20 C -0.182 4.182 21 C 0.299 3.701 22 N -0.426 5.426 23 O -0.417 6.417 24 H 0.089 0.911 25 H 0.149 0.851 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.228 0.772 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 17.462 4.228 2.149 18.095 hybrid contribution 0.271 1.031 -0.015 1.066 sum 17.732 5.259 2.134 18.619 Atomic orbital electron populations 1.69644 1.05577 1.28383 1.48333 1.24436 0.94973 0.98694 0.95784 0.86258 0.80680 0.81652 0.78891 1.19979 1.20921 1.17863 1.20769 0.77071 0.96543 1.52026 0.87757 1.83570 1.22304 1.25518 1.80358 1.18923 0.91139 0.85540 0.93391 1.21289 1.01078 0.91993 1.09660 1.20791 0.94367 0.96670 0.98098 1.20637 0.94064 0.97291 1.10416 1.20551 0.98358 0.91444 0.99313 1.18989 0.91017 0.95144 1.10501 1.20262 0.97914 0.95050 0.96625 1.21543 1.00289 0.96046 0.97161 1.21618 0.99866 0.98326 0.95781 1.21386 1.00311 0.95195 0.97549 1.21737 1.02623 1.00663 0.93208 1.20921 0.76813 0.80012 0.92339 1.43958 1.57959 1.28494 1.12152 1.90766 1.51229 1.54007 1.45706 0.91134 0.85057 0.87406 0.87623 0.87079 0.92294 0.91245 0.91247 0.92321 0.92261 0.91937 0.91036 0.91275 0.88884 0.88757 0.77152 0.77137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.96 55.48 0.77 -24.81 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.90 21.48 28.62 -169.99 -4.86 16.62 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.25 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.39 -10.92 9.95 30.89 0.31 -10.61 16 8 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 9 O -0.21 -5.50 7.73 0.04 0.00 -5.50 16 10 C 0.16 3.74 6.62 -39.11 -0.26 3.48 16 11 C -0.22 -4.87 9.17 -39.39 -0.36 -5.23 16 12 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16 13 C -0.21 -3.53 10.04 -39.53 -0.40 -3.92 16 14 C -0.08 -1.36 9.68 -39.61 -0.38 -1.74 16 15 C -0.16 -3.05 5.15 -104.43 -0.54 -3.58 16 16 C -0.06 -1.04 5.06 -27.88 -0.14 -1.19 16 17 C -0.11 -1.81 5.20 -26.73 -0.14 -1.94 16 18 C -0.12 -1.52 5.21 -26.73 -0.14 -1.66 16 19 C -0.11 -1.34 4.50 -26.72 -0.12 -1.46 16 20 C -0.14 -1.33 5.70 -27.88 -0.16 -1.48 16 21 C 0.51 5.65 8.10 -10.99 -0.09 5.56 16 22 N -0.86 -5.72 8.87 31.22 0.28 -5.44 16 23 O -0.54 -8.65 16.82 5.55 0.09 -8.56 16 24 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.13 3.03 5.64 -52.49 -0.30 2.74 16 26 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.06 0.84 8.05 -51.92 -0.42 0.42 16 30 H 0.07 1.30 7.70 -51.93 -0.40 0.89 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.40 1.35 8.83 -40.82 -0.36 0.99 16 40 H 0.40 2.36 8.93 -40.82 -0.36 1.99 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -32.80 339.37 -7.42 -40.22 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.91 Total: 6.34 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -2.91 Total: -23.99 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 1.05 Total: -30.25 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.86 Total: 16.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.80 -7.42 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250272727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.408 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds