Wall clock time and date at job start Mon Mar 30 2020 01:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86805 * 119.99735 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00042 * 3 2 1 5 5 H 1.48493 * 109.47037 * 30.00245 * 3 2 1 6 6 H 1.48499 * 109.46776 * 150.00567 * 3 2 1 7 7 C 1.38656 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00012 * 359.97438 * 7 2 1 9 9 O 1.34834 * 119.99678 * 179.97438 * 7 2 1 10 10 C 1.35750 * 116.99697 * 185.06421 * 9 7 2 11 11 C 1.38905 * 120.07095 * 354.39435 * 10 9 7 12 12 C 1.38078 * 119.93031 * 180.31813 * 11 10 9 13 13 C 1.38325 * 120.07219 * 359.68868 * 12 11 10 14 14 C 1.38281 * 120.13446 * 359.97438 * 13 12 11 15 15 C 1.38127 * 120.07020 * 0.04441 * 14 13 12 16 16 C 1.50698 * 120.03458 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.46910 * 265.00104 * 16 15 14 18 18 C 1.52998 * 109.46734 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.46734 * 180.02562 * 18 17 16 20 20 C 1.53006 * 109.46956 * 180.02562 * 19 18 17 21 21 C 1.50693 * 109.47163 * 180.02562 * 20 19 18 22 22 N 1.34776 * 120.00278 * 180.02562 * 21 20 19 23 23 O 1.21287 * 120.00159 * 359.97438 * 21 20 19 24 24 H 0.96995 * 119.99912 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.03563 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.96249 * 179.70485 * 12 11 10 27 27 H 1.07991 * 119.93424 * 180.02562 * 13 12 11 28 28 H 1.08000 * 119.96304 * 180.02562 * 14 13 12 29 29 H 1.09007 * 109.47209 * 24.99862 * 16 15 14 30 30 H 1.08991 * 109.47547 * 144.99998 * 16 15 14 31 31 H 1.08997 * 109.46997 * 299.99900 * 17 16 15 32 32 H 1.08995 * 109.46862 * 60.00077 * 17 16 15 33 33 H 1.08997 * 109.47256 * 299.99691 * 18 17 16 34 34 H 1.08991 * 109.47676 * 59.99923 * 18 17 16 35 35 H 1.08997 * 109.46997 * 299.99850 * 19 18 17 36 36 H 1.08995 * 109.47321 * 60.00297 * 19 18 17 37 37 H 1.08997 * 109.47144 * 299.99759 * 20 19 18 38 38 H 1.09001 * 109.47214 * 59.99402 * 20 19 18 39 39 H 0.97001 * 120.00039 * 359.97438 * 22 21 20 40 40 H 0.97004 * 120.00055 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.6999 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4054 -0.1083 11 6 3.2236 -3.5746 -0.0940 12 6 3.8540 -4.7987 -0.1967 13 6 5.2303 -4.8614 -0.3202 14 6 5.9790 -3.6991 -0.3418 15 6 5.3543 -2.4714 -0.2391 16 6 6.1711 -1.2052 -0.2621 17 6 6.4687 -0.7641 1.1725 18 6 7.2974 0.5217 1.1490 19 6 7.5956 0.9624 2.5836 20 6 8.4238 2.2487 2.5603 21 6 8.7180 2.6825 3.9731 22 7 9.4387 3.7987 4.1992 23 8 8.3055 2.0276 4.9069 24 1 -0.4850 0.8400 0.0004 25 1 2.1489 -3.5264 0.0021 26 1 3.2718 -5.7083 -0.1809 27 1 5.7210 -5.8200 -0.4008 28 1 7.0534 -3.7512 -0.4388 29 1 7.1084 -1.3869 -0.7882 30 1 5.6128 -0.4219 -0.7746 31 1 5.5315 -0.5825 1.6985 32 1 7.0271 -1.5475 1.6849 33 1 8.2346 0.3405 0.6229 34 1 6.7387 1.3049 0.6367 35 1 6.6586 1.1436 3.1102 36 1 8.1546 0.1792 3.0956 37 1 9.3608 2.0681 2.0335 38 1 7.8645 3.0318 2.0483 39 1 9.7683 4.3227 3.4524 40 1 9.6284 4.0777 5.1087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250272727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:37 Heat of formation + Delta-G solvation = -97.082403 kcal Electronic energy + Delta-G solvation = -20812.522921 eV Core-core repulsion = 17590.694771 eV Total energy + Delta-G solvation = -3221.828151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98217 -40.50065 -38.30607 -36.89576 -34.67847 -34.47701 -33.99074 -31.15504 -30.60940 -27.72641 -27.08884 -24.27452 -23.09268 -22.16169 -21.73390 -21.14306 -19.73194 -18.83619 -18.16249 -17.56828 -17.06156 -16.68480 -16.51481 -15.89681 -15.70948 -15.44956 -15.30629 -14.95341 -14.41523 -14.22454 -14.17403 -14.06578 -13.95764 -13.14059 -12.91675 -12.75772 -12.60705 -12.43388 -12.25071 -12.08932 -11.89168 -11.80187 -11.65460 -11.33346 -11.18000 -10.97182 -10.90590 -10.64241 -9.58226 -8.98103 -8.49762 -6.20874 0.57840 0.74231 1.28691 1.33692 1.50885 1.66767 2.27663 2.66394 2.79273 3.10055 3.19168 3.83848 3.95572 4.01626 4.12772 4.14316 4.33325 4.36738 4.41987 4.57120 4.61639 4.72364 4.78369 4.82347 4.91559 4.99406 5.02424 5.08561 5.12949 5.33647 5.39943 5.42510 5.53693 5.55887 5.67950 5.78551 5.86697 5.91678 5.94601 6.32461 6.49509 6.85528 7.38681 7.62196 8.62312 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.004926 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.820000 B = 5683.301028 C = 7430.107481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.397 4.397 8 H 0.076 0.924 9 O -0.235 6.235 10 C 0.119 3.881 11 C -0.246 4.246 12 C -0.088 4.088 13 C -0.183 4.183 14 C -0.074 4.074 15 C -0.156 4.156 16 C -0.060 4.060 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.106 4.106 20 C -0.135 4.135 21 C 0.508 3.492 22 N -0.839 5.839 23 O -0.603 6.603 24 H 0.283 0.717 25 H 0.102 0.898 26 H 0.134 0.866 27 H 0.150 0.850 28 H 0.158 0.842 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.420 0.580 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.494 4.432 0.524 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.473 4.473 8 H 0.093 0.907 9 O -0.142 6.142 10 C 0.070 3.930 11 C -0.266 4.266 12 C -0.106 4.106 13 C -0.201 4.201 14 C -0.092 4.092 15 C -0.157 4.157 16 C -0.097 4.097 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.175 4.175 21 C 0.294 3.706 22 N -0.403 5.403 23 O -0.484 6.484 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.152 0.848 27 H 0.168 0.832 28 H 0.175 0.825 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.130 0.870 39 H 0.251 0.749 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 22.066 4.260 0.993 22.496 hybrid contribution -0.965 0.735 0.322 1.255 sum 21.101 4.995 1.315 21.724 Atomic orbital electron populations 1.69736 1.06983 1.29450 1.50613 1.25254 0.95828 1.02077 0.95650 0.85305 0.79245 0.77439 0.79444 1.18710 1.19700 1.17926 1.20698 0.78534 0.95869 1.52243 0.90670 1.83523 1.20577 1.27089 1.83006 1.19547 0.92958 0.85001 0.95492 1.21338 1.00039 0.93759 1.11417 1.21129 0.95857 0.96056 0.97514 1.21221 0.93134 0.99364 1.06382 1.21115 1.00690 0.90144 0.97217 1.19500 0.89670 0.97665 1.08825 1.20342 0.98875 0.93184 0.97332 1.21499 0.98933 0.98262 0.96092 1.21557 1.00702 0.96325 0.96080 1.21298 0.99177 0.96995 0.96903 1.21718 1.03902 0.99254 0.92617 1.21276 0.76512 0.80381 0.92412 1.43771 1.56048 1.27079 1.13388 1.90747 1.53980 1.56212 1.47441 0.90723 0.88003 0.84805 0.83186 0.82455 0.88172 0.93426 0.95716 0.91253 0.88672 0.92389 0.94644 0.92043 0.85255 0.86960 0.74880 0.76524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.96 21.61 0.30 -56.47 16 2 C 0.01 0.58 5.49 84.83 0.47 1.04 16 3 Si 0.96 46.01 28.62 68.60 1.96 47.97 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.40 -23.97 9.95 67.92 0.68 -23.30 16 8 H 0.08 4.81 5.44 -2.91 -0.02 4.80 16 9 O -0.23 -12.84 7.73 -22.78 -0.18 -13.02 16 10 C 0.12 5.68 6.62 22.58 0.15 5.83 16 11 C -0.25 -11.33 9.17 22.39 0.21 -11.12 16 12 C -0.09 -3.14 10.04 22.25 0.22 -2.92 16 13 C -0.18 -5.47 10.04 22.30 0.22 -5.25 16 14 C -0.07 -2.23 9.68 22.25 0.22 -2.02 16 15 C -0.16 -5.87 5.15 -19.74 -0.10 -5.98 16 16 C -0.06 -1.93 5.06 29.85 0.15 -1.78 16 17 C -0.11 -3.41 5.20 30.60 0.16 -3.25 16 18 C -0.11 -2.55 5.21 30.60 0.16 -2.39 16 19 C -0.11 -2.55 4.50 30.60 0.14 -2.42 16 20 C -0.14 -2.14 5.70 29.85 0.17 -1.97 16 21 C 0.51 10.39 8.10 87.66 0.71 11.10 16 22 N -0.84 -9.04 8.87 -173.53 -1.54 -10.58 16 23 O -0.60 -19.46 16.82 -3.05 -0.05 -19.51 16 24 H 0.28 15.94 8.31 -92.71 -0.77 15.16 16 25 H 0.10 5.19 5.64 -2.91 -0.02 5.18 16 26 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 27 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 28 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.10 2.37 8.05 -2.38 -0.02 2.36 16 30 H 0.05 1.74 7.70 -2.39 -0.02 1.72 16 31 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.06 1.55 8.10 -2.39 -0.02 1.54 16 37 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.42 1.34 8.83 -92.71 -0.82 0.52 16 40 H 0.40 3.97 8.93 -92.71 -0.83 3.14 16 Total: -1.00 -79.10 339.37 3.45 -75.65 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -0.59 Total: 20.35 kcal Atomic # 6 Polarization: -47.95 SS G_CDS: 3.55 Total: -44.40 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -1.24 Total: -67.05 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.23 Total: -32.53 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.96 Total: 47.97 kcal Total: -79.10 3.45 -75.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250272727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.436 kcal (2) G-P(sol) polarization free energy of solvation -79.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds