Wall clock time and date at job start Mon Mar 30 2020 01:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86794 * 120.00253 * 2 1 4 4 H 1.48508 * 109.46870 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47544 * 299.99711 * 3 2 1 6 6 H 1.48502 * 109.47116 * 60.00030 * 3 2 1 7 7 C 1.39933 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99619 * 163.98828 * 7 2 1 9 9 C 1.41044 * 119.99887 * 343.99605 * 7 2 1 10 10 C 1.40729 * 120.30978 * 333.65090 * 9 7 2 11 11 C 1.36450 * 119.95105 * 180.02562 * 10 9 7 12 12 C 1.38893 * 120.60111 * 0.02562 * 11 10 9 13 13 C 1.38173 * 120.62493 * 359.70391 * 12 11 10 14 14 C 1.38755 * 120.02029 * 0.54643 * 13 12 11 15 15 N 1.38730 * 120.28959 * 179.74868 * 14 13 12 16 16 C 1.46499 * 120.00151 * 359.72832 * 15 14 13 17 17 C 1.53003 * 109.47215 * 179.97438 * 16 15 14 18 18 O 1.42899 * 109.54043 * 65.00067 * 17 16 15 19 19 C 1.53173 * 109.54286 * 304.82411 * 17 16 15 20 20 C 1.53111 * 109.15682 * 183.23836 * 19 17 16 21 21 O 1.42904 * 109.48299 * 57.47482 * 20 19 17 22 22 C 1.42894 * 114.10047 * 298.88596 * 21 20 19 23 23 C 1.53097 * 109.41414 * 61.16187 * 22 21 20 24 24 H 0.97000 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.02262 * 0.04632 * 10 9 7 26 26 H 1.08005 * 119.69954 * 180.02562 * 11 10 9 27 27 H 1.07993 * 119.69222 * 179.97438 * 12 11 10 28 28 H 1.07990 * 119.98973 * 180.28167 * 13 12 11 29 29 H 0.97003 * 119.99910 * 179.73032 * 15 14 13 30 30 H 1.08997 * 109.47190 * 59.99748 * 16 15 14 31 31 H 1.09000 * 109.47082 * 299.99851 * 16 15 14 32 32 H 0.96704 * 114.00099 * 299.99589 * 18 17 16 33 33 H 1.08997 * 109.52527 * 303.05499 * 19 17 16 34 34 H 1.09000 * 109.52529 * 63.25052 * 19 17 16 35 35 H 1.08999 * 109.40843 * 297.49442 * 20 19 17 36 36 H 1.09007 * 109.48988 * 177.50643 * 20 19 17 37 37 H 1.09005 * 109.48520 * 301.17910 * 22 21 20 38 38 H 1.08999 * 109.49512 * 181.14573 * 22 21 20 39 39 H 1.09001 * 109.52538 * 182.49009 * 23 22 21 40 40 H 1.08994 * 109.57615 * 62.32584 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7030 1.3462 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0084 -1.2119 0.0005 8 1 3.0570 -1.2302 -0.2574 9 6 1.3441 -2.4095 0.3378 10 6 0.2138 -2.3829 1.1758 11 6 -0.4230 -3.5460 1.4979 12 6 0.0341 -4.7619 1.0062 13 6 1.1382 -4.8156 0.1771 14 6 1.8085 -3.6493 -0.1628 15 7 2.9207 -3.6973 -0.9906 16 6 3.3959 -4.9841 -1.5051 17 6 4.6262 -4.7581 -2.3862 18 8 5.6985 -4.2515 -1.5889 19 6 4.2882 -3.7512 -3.4898 20 6 5.4990 -3.5928 -4.4135 21 8 5.8569 -4.8669 -4.9529 22 6 6.2291 -5.8335 -3.9686 23 6 5.0470 -6.0836 -3.0284 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1495 -1.4426 1.5635 26 1 -1.2903 -3.5208 2.1410 27 1 -0.4808 -5.6735 1.2708 28 1 1.4820 -5.7662 -0.2030 29 1 3.3839 -2.8789 -1.2287 30 1 2.6082 -5.4527 -2.0950 31 1 3.6604 -5.6337 -0.6708 32 1 5.5018 -3.4107 -1.1536 33 1 3.4372 -4.1143 -4.0660 34 1 4.0419 -2.7886 -3.0418 35 1 6.3376 -3.1900 -3.8456 36 1 5.2495 -2.9109 -5.2265 37 1 7.0773 -5.4600 -3.3947 38 1 6.5056 -6.7659 -4.4607 39 1 5.3429 -6.7874 -2.2504 40 1 4.2114 -6.4958 -3.5939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252967753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:16 Heat of formation + Delta-G solvation = -98.391427 kcal Electronic energy + Delta-G solvation = -21989.587694 eV Core-core repulsion = 18767.702780 eV Total energy + Delta-G solvation = -3221.884914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.10213 -39.63155 -37.85748 -35.65729 -35.28639 -33.21677 -32.12905 -31.48635 -30.01290 -27.70654 -26.73433 -24.66484 -24.03030 -22.53382 -21.59942 -21.07798 -19.12053 -18.31055 -17.60415 -17.08777 -16.94089 -16.72613 -16.22397 -15.93420 -15.77655 -15.49635 -15.03127 -14.47948 -14.34463 -14.17573 -13.94541 -13.83796 -13.35077 -13.26839 -12.99928 -12.88693 -12.73136 -12.60533 -12.30502 -12.12100 -11.88012 -11.51200 -11.34848 -11.26471 -11.02493 -10.99061 -10.58374 -10.39698 -9.24601 -8.56035 -8.04727 -6.05550 1.04580 1.33057 1.40887 1.52707 1.54150 2.24618 2.80686 2.89000 2.95670 3.15642 3.65227 3.67816 3.79873 3.86037 4.03200 4.28394 4.46439 4.50294 4.52108 4.63186 4.65559 4.68612 4.73874 4.77380 4.82283 4.89275 5.04203 5.06556 5.17332 5.22922 5.34229 5.46702 5.63964 5.88440 5.97494 6.23215 6.30456 6.37004 6.58169 6.60710 6.88836 7.02858 7.20114 7.29902 8.48119 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.005751 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.912741 B = 4867.769468 C = 6208.797766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.033 3.967 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.488 4.488 8 H 0.077 0.923 9 C 0.032 3.968 10 C -0.163 4.163 11 C -0.161 4.161 12 C -0.193 4.193 13 C -0.187 4.187 14 C 0.113 3.887 15 N -0.742 5.742 16 C 0.115 3.885 17 C 0.131 3.869 18 O -0.562 6.562 19 C -0.177 4.177 20 C 0.067 3.933 21 O -0.399 6.399 22 C 0.064 3.936 23 C -0.137 4.137 24 H 0.281 0.719 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.393 0.607 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.383 0.617 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.135 -6.822 -6.600 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.180 4.180 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.519 4.519 8 H 0.095 0.905 9 C 0.027 3.973 10 C -0.184 4.184 11 C -0.181 4.181 12 C -0.212 4.212 13 C -0.210 4.210 14 C 0.013 3.987 15 N -0.377 5.377 16 C -0.010 4.010 17 C 0.090 3.910 18 O -0.369 6.369 19 C -0.216 4.216 20 C -0.009 4.009 21 O -0.319 6.319 22 C -0.012 4.012 23 C -0.175 4.175 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.229 0.771 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.232 0.768 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.264 -7.451 -7.066 14.518 hybrid contribution -0.498 1.803 0.696 1.996 sum 9.766 -5.647 -6.370 12.955 Atomic orbital electron populations 1.69933 1.08887 1.29614 1.38321 1.26578 0.95336 1.04001 0.92068 0.85291 0.79718 0.77174 0.78296 1.17716 1.19771 1.19907 1.19355 0.97077 0.91729 1.43737 0.90522 1.17575 0.94523 0.91709 0.93489 1.20793 0.99727 0.96789 1.01126 1.20509 1.00795 0.93418 1.03384 1.20522 0.99809 0.96612 1.04282 1.20366 0.99697 0.95752 1.05165 1.18050 0.91443 0.93682 0.95563 1.43919 1.31453 1.07414 1.54936 1.21820 0.95574 0.86731 0.96872 1.21377 0.85545 0.94928 0.89111 1.86449 1.40457 1.43414 1.66613 1.22787 1.00031 1.00504 0.98243 1.22543 0.95487 0.85367 0.97530 1.87879 1.87462 1.22437 1.34075 1.22622 0.95465 0.92974 0.90170 1.22162 1.00719 0.94871 0.99771 0.90915 0.88663 0.88324 0.86871 0.86988 0.77119 0.92726 0.92825 0.76770 0.90579 0.90778 0.92471 0.87897 0.92785 0.86788 0.89029 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.54 10.97 21.83 0.24 -44.30 16 2 C 0.03 1.62 5.16 85.24 0.44 2.06 16 3 Si 0.97 37.96 29.59 68.60 2.03 39.99 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.49 -24.93 8.49 23.37 0.20 -24.73 16 8 H 0.08 3.63 6.72 -2.91 -0.02 3.61 16 9 C 0.03 1.66 5.57 -21.17 -0.12 1.54 16 10 C -0.16 -8.76 8.62 22.46 0.19 -8.57 16 11 C -0.16 -7.76 9.96 22.01 0.22 -7.54 16 12 C -0.19 -8.49 10.04 22.41 0.22 -8.27 16 13 C -0.19 -8.12 9.30 22.38 0.21 -7.92 16 14 C 0.11 5.23 6.68 38.99 0.26 5.49 16 15 N -0.74 -27.62 5.12 -338.05 -1.73 -29.35 16 16 C 0.12 3.43 4.08 86.38 0.35 3.78 16 17 C 0.13 3.23 0.72 -10.67 -0.01 3.22 16 18 O -0.56 -14.34 11.95 -148.98 -1.78 -16.12 16 19 C -0.18 -4.38 4.84 30.69 0.15 -4.23 16 20 C 0.07 1.50 6.69 72.02 0.48 1.98 16 21 O -0.40 -9.52 10.77 -148.98 -1.60 -11.13 16 22 C 0.06 1.27 6.69 72.01 0.48 1.75 16 23 C -0.14 -2.81 5.15 30.69 0.16 -2.65 16 24 H 0.28 13.65 8.30 -92.71 -0.77 12.88 16 25 H 0.10 5.40 6.22 -2.91 -0.02 5.38 16 26 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 27 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.11 4.24 6.73 -2.92 -0.02 4.22 16 29 H 0.39 14.30 4.66 -92.71 -0.43 13.87 16 30 H 0.05 1.64 7.93 -2.39 -0.02 1.62 16 31 H 0.05 1.64 7.95 -2.39 -0.02 1.62 16 32 H 0.38 9.16 8.20 -74.05 -0.61 8.56 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.96 6.71 -2.39 -0.02 1.94 16 35 H 0.06 1.25 7.82 -2.39 -0.02 1.23 16 36 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.05 1.12 7.82 -2.38 -0.02 1.10 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -59.95 317.62 0.42 -59.53 By element: Atomic # 1 Polarization: 45.42 SS G_CDS: 0.02 Total: 45.44 kcal Atomic # 6 Polarization: -47.32 SS G_CDS: 3.24 Total: -44.07 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.49 Total: -73.65 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -3.38 Total: -27.24 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -59.95 0.42 -59.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252967753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.857 kcal (2) G-P(sol) polarization free energy of solvation -59.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds