Wall clock time and date at job start Mon Mar 30 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38233 * 120.00351 * 2 1 4 4 C 1.38231 * 120.00249 * 180.02562 * 3 2 1 5 5 C 1.38241 * 120.00327 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00164 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47531 * 339.99558 * 6 5 4 8 8 O 1.42901 * 109.46872 * 219.99567 * 6 5 4 9 9 C 1.53001 * 109.47152 * 100.00213 * 6 5 4 10 10 N 1.46903 * 109.47069 * 184.99916 * 9 6 5 11 11 C 1.47957 * 111.00079 * 169.99783 * 10 9 6 12 12 C 1.53937 * 86.18208 * 222.41605 * 11 10 9 13 13 O 1.42896 * 113.73148 * 269.25755 * 12 11 10 14 14 C 1.50694 * 113.73443 * 138.07827 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47958 * 111.00224 * 70.63461 * 10 9 6 23 23 C 1.38237 * 119.99517 * 0.24641 * 5 4 3 24 24 C 1.38239 * 120.00157 * 359.49870 * 23 5 4 25 25 H 1.08999 * 109.47123 * 89.99498 * 1 2 3 26 26 H 1.08997 * 109.47340 * 209.99553 * 1 2 3 27 27 H 1.09000 * 109.46851 * 329.99586 * 1 2 3 28 28 H 1.07996 * 120.00061 * 0.02562 * 3 2 1 29 29 H 1.08006 * 120.00274 * 179.97438 * 4 3 2 30 30 H 0.96697 * 114.00477 * 300.00055 * 8 6 5 31 31 H 1.08997 * 109.47366 * 64.99783 * 9 6 5 32 32 H 1.08999 * 109.46999 * 304.99072 * 9 6 5 33 33 H 1.08999 * 113.76060 * 108.09601 * 11 10 9 34 34 H 1.09001 * 113.85944 * 336.74419 * 11 10 9 35 35 H 0.96709 * 114.00030 * 178.09403 * 13 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.09003 * 113.76031 * 23.26533 * 22 10 9 38 38 H 1.08999 * 113.76380 * 251.90073 * 22 10 9 39 39 H 1.07994 * 119.99788 * 179.72830 * 23 5 4 40 40 H 1.07993 * 120.00159 * 180.22330 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 1 6.1418 0.9657 -0.3542 8 8 6.2543 -1.0319 -0.8696 9 6 6.2898 -0.2513 1.4173 10 7 7.7539 -0.1327 1.4389 11 6 8.2653 -0.1314 2.8272 12 6 9.2059 0.9983 2.3705 13 8 10.4670 0.5351 1.8835 14 6 9.3377 2.1189 3.3693 15 1 8.7969 2.0764 4.3032 16 6 10.1487 3.1988 3.0910 17 7 10.8076 3.2504 1.9540 18 14 10.3114 4.5882 4.3288 19 1 9.2729 5.6150 4.0598 20 1 10.1329 4.0514 5.7019 21 1 11.6579 5.2028 4.2088 22 6 8.1746 1.2747 1.2616 23 6 3.5805 -1.1972 -0.0073 24 6 2.1981 -1.1972 -0.0014 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6583 2.1324 0.0004 29 1 4.1206 2.1324 -0.0010 30 1 5.9692 -1.9206 -0.6167 31 1 6.0017 -1.2532 1.7353 32 1 5.8558 0.4839 2.0950 33 1 8.7837 -1.0491 3.1051 34 1 7.5296 0.1822 3.5679 35 1 11.0498 1.2396 1.5684 36 1 11.3779 4.0102 1.7580 37 1 7.4111 2.0001 1.5428 38 1 8.6205 1.4805 0.2885 39 1 4.1205 -2.1325 -0.0126 40 1 1.6582 -2.1325 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325737232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:19 Heat of formation + Delta-G solvation = -67.731282 kcal Electronic energy + Delta-G solvation = -21384.580904 eV Core-core repulsion = 18164.025514 eV Total energy + Delta-G solvation = -3220.555390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17491 -40.30450 -38.01638 -36.04333 -34.12037 -33.86293 -31.86774 -31.38301 -28.96169 -27.39688 -26.94770 -25.08254 -23.71025 -22.82899 -21.54863 -20.50482 -19.30646 -18.32420 -17.26140 -16.97029 -16.74244 -16.49230 -16.03437 -15.91648 -15.67275 -15.02277 -14.95537 -14.53894 -14.30709 -14.09634 -13.95489 -13.66292 -13.36896 -13.12697 -13.00608 -12.89205 -12.67520 -12.55775 -12.44431 -12.27632 -12.07237 -11.96271 -11.79405 -11.19429 -10.96209 -10.63670 -10.14193 -9.86925 -9.56317 -9.45293 -8.25320 -6.43987 0.32799 0.45957 1.40569 1.42832 1.53187 2.36113 2.72728 2.94813 3.07649 3.52108 3.63470 3.83888 3.95598 4.02726 4.07922 4.11667 4.19770 4.29094 4.40094 4.46301 4.54849 4.55830 4.63715 4.78778 4.84361 4.87006 4.90476 4.92587 5.12037 5.16174 5.25874 5.38385 5.45320 5.45985 5.64402 5.67012 5.73720 5.97483 6.07784 6.28474 6.61386 6.80974 7.29195 7.52817 8.79400 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024369 B = 0.003974 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.747237 B = 7043.562807 C = 7722.175573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.130 4.130 6 C 0.164 3.836 7 H 0.081 0.919 8 O -0.558 6.558 9 C -0.001 4.001 10 N -0.471 5.471 11 C 0.015 3.985 12 C 0.219 3.781 13 O -0.585 6.585 14 C -0.562 4.562 15 H 0.065 0.935 16 C 0.026 3.974 17 N -0.919 5.919 18 Si 0.968 3.032 19 H -0.272 1.272 20 H -0.269 1.269 21 H -0.280 1.280 22 C -0.002 4.002 23 C -0.113 4.113 24 C -0.123 4.123 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.383 0.617 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.382 0.618 36 H 0.274 0.726 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.138 0.862 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.472 -5.743 -2.933 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.131 4.131 6 C 0.105 3.895 7 H 0.099 0.901 8 O -0.365 6.365 9 C -0.129 4.129 10 N -0.193 5.193 11 C -0.113 4.113 12 C 0.178 3.822 13 O -0.396 6.396 14 C -0.600 4.600 15 H 0.083 0.917 16 C -0.173 4.173 17 N -0.560 5.560 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.193 1.193 21 H -0.205 1.205 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.141 4.141 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.156 0.844 29 H 0.137 0.863 30 H 0.232 0.768 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.155 0.845 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.118 -6.229 -3.648 20.435 hybrid contribution 0.173 1.655 1.099 1.994 sum -18.945 -4.574 -2.549 19.655 Atomic orbital electron populations 1.20837 0.89088 1.03753 1.03156 1.20342 0.97711 0.92902 0.98483 1.21268 0.93481 0.98916 1.00859 1.21180 0.95227 0.97538 1.00196 1.20496 0.95414 0.94860 1.02358 1.20512 0.88375 0.91739 0.88919 0.90099 1.86622 1.77304 1.18729 1.53860 1.23330 0.90243 1.02340 0.97034 1.68509 1.10262 1.21667 1.18859 1.24097 0.97043 0.99353 0.90855 1.20109 0.81573 0.90504 0.90059 1.86023 1.29310 1.39771 1.84494 1.21930 1.28855 1.04623 1.04624 0.91724 1.25836 0.94049 1.00425 0.97028 1.69438 1.29924 1.32452 1.24154 0.85402 0.77643 0.78543 0.79106 1.19791 1.19322 1.20518 1.24425 0.99265 0.89130 1.00377 1.21114 0.94989 0.97430 0.99531 1.21320 0.93668 0.98713 1.00407 0.90252 0.90342 0.90839 0.84374 0.86286 0.76807 0.89161 0.93913 0.90530 0.90464 0.76393 0.91624 0.92419 0.93153 0.84466 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.23 0.71 -0.61 16 2 C -0.09 -1.73 5.88 -19.87 -0.12 -1.85 16 3 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16 4 C -0.12 -3.12 9.67 22.27 0.22 -2.91 16 5 C -0.13 -3.42 4.97 -19.87 -0.10 -3.52 16 6 C 0.16 5.13 3.26 29.85 0.10 5.23 16 7 H 0.08 2.90 7.28 -2.39 -0.02 2.88 16 8 O -0.56 -17.68 13.13 -148.98 -1.96 -19.64 16 9 C 0.00 -0.02 4.43 86.30 0.38 0.36 16 10 N -0.47 -19.87 6.21 -910.87 -5.66 -25.52 16 11 C 0.02 0.66 7.36 86.41 0.64 1.30 16 12 C 0.22 11.38 1.44 -10.89 -0.02 11.37 16 13 O -0.58 -33.10 13.48 -148.98 -2.01 -35.11 16 14 C -0.56 -30.46 8.62 25.60 0.22 -30.24 16 15 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 16 C 0.03 1.40 5.40 84.66 0.46 1.86 16 17 N -0.92 -50.34 11.09 21.45 0.24 -50.10 16 18 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 22 C 0.00 -0.12 6.43 86.41 0.56 0.44 16 23 C -0.11 -2.42 9.32 22.27 0.21 -2.21 16 24 C -0.12 -2.27 9.70 22.27 0.22 -2.05 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 27 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 28 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.12 2.99 8.04 -2.91 -0.02 2.97 16 30 H 0.38 8.87 7.50 -74.06 -0.56 8.32 16 31 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.04 1.45 7.69 -2.39 -0.02 1.43 16 33 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.08 3.14 7.75 -2.39 -0.02 3.12 16 35 H 0.38 22.12 6.46 -74.05 -0.48 21.64 16 36 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.06 2.70 7.73 -2.39 -0.02 2.68 16 38 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.14 2.35 6.78 -2.91 -0.02 2.33 16 40 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -63.67 331.16 -3.66 -67.33 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: 0.01 Total: 44.47 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 3.69 Total: -25.28 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -5.42 Total: -75.63 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -3.97 Total: -54.75 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -63.67 -3.66 -67.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325737232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.401 kcal (2) G-P(sol) polarization free energy of solvation -63.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds