Wall clock time and date at job start Mon Mar 30 2020 01:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48492 * 109.46963 * 269.99666 * 3 2 1 5 5 H 1.48497 * 109.47203 * 29.99755 * 3 2 1 6 6 H 1.48497 * 109.47053 * 149.99855 * 3 2 1 7 7 C 1.37876 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99966 * 0.02562 * 7 2 1 10 10 O 1.42899 * 113.28594 * 46.93586 * 9 7 2 11 11 C 1.53500 * 114.20447 * 179.97438 * 9 7 2 12 12 N 1.47062 * 87.98589 * 139.65616 * 11 9 7 13 13 C 1.34784 * 136.05762 * 152.84499 * 12 11 9 14 14 O 1.21279 * 119.99925 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99961 * 179.97438 * 13 12 11 16 16 H 1.09003 * 109.45919 * 60.02499 * 15 13 12 17 17 C 1.53036 * 109.45597 * 300.08021 * 15 13 12 18 18 C 1.53407 * 109.54643 * 239.97465 * 17 15 13 19 19 H 1.08995 * 111.32743 * 177.41390 * 18 17 15 20 20 C 1.52158 * 107.84591 * 55.70669 * 18 17 15 21 21 C 1.33094 * 113.75360 * 301.72131 * 20 18 17 22 22 C 1.52151 * 113.76122 * 359.97438 * 21 20 18 23 23 H 1.09002 * 111.33917 * 179.97438 * 22 21 20 24 24 C 1.53491 * 107.67937 * 301.58774 * 22 21 20 25 25 C 1.53021 * 109.53653 * 55.82061 * 24 22 21 26 26 C 1.47061 * 87.88485 * 333.09948 * 12 11 9 27 27 H 0.97005 * 120.00534 * 0.02562 * 1 2 3 28 28 H 0.96706 * 113.99327 * 313.06410 * 10 9 7 29 29 H 1.08999 * 113.47071 * 24.87077 * 11 9 7 30 30 H 1.09000 * 113.46754 * 254.43307 * 11 9 7 31 31 H 1.08997 * 109.45809 * 359.97438 * 17 15 13 32 32 H 1.09001 * 109.45998 * 119.95501 * 17 15 13 33 33 H 1.07998 * 123.12174 * 121.71998 * 20 18 17 34 34 H 1.08005 * 123.11544 * 180.02562 * 21 20 18 35 35 H 1.09002 * 109.45865 * 175.83523 * 24 22 21 36 36 H 1.08999 * 109.46411 * 295.79846 * 24 22 21 37 37 H 1.09003 * 109.46065 * 120.01952 * 25 24 22 38 38 H 1.08998 * 109.45891 * 239.98732 * 25 24 22 39 39 H 1.09001 * 113.46984 * 141.68050 * 26 12 11 40 40 H 1.09003 * 113.46580 * 272.11929 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.1926 -2.5404 -0.9588 11 6 2.1487 -3.7442 0.0005 12 7 1.2099 -4.3574 0.9520 13 6 0.8345 -5.6114 1.2735 14 8 1.3280 -6.5583 0.6985 15 6 -0.1984 -5.8368 2.3474 16 1 -1.1303 -5.3479 2.0633 17 6 0.3030 -5.2490 3.6684 18 6 0.3963 -6.3601 4.7220 19 1 0.7944 -5.9813 5.6633 20 6 1.2874 -7.4593 4.1627 21 6 0.8513 -7.9705 3.0138 22 6 -0.4418 -7.3425 2.5152 23 1 -0.7623 -7.7890 1.5738 24 6 -1.5065 -7.5419 3.6026 25 6 -1.0051 -6.9541 4.9235 26 6 0.8561 -3.0001 1.3938 27 1 -0.4851 0.8400 -0.0004 28 1 -0.3710 -1.7546 -0.9566 29 1 3.1384 -3.5658 0.4210 30 1 2.1849 -4.2532 -0.9626 31 1 1.2882 -4.8074 3.5185 32 1 -0.3909 -4.4813 4.0108 33 1 2.1900 -7.7937 4.6525 34 1 1.3670 -8.7585 2.4851 35 1 -2.4264 -7.0376 3.3069 36 1 -1.7010 -8.6068 3.7296 37 1 -1.6871 -6.1710 5.2547 38 1 -0.9614 -7.7402 5.6773 39 1 -0.2046 -2.8776 1.6131 40 1 1.4979 -2.6215 2.1893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329659210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:10 Heat of formation + Delta-G solvation = -53.920009 kcal Electronic energy + Delta-G solvation = -22407.465858 eV Core-core repulsion = 19187.509369 eV Total energy + Delta-G solvation = -3219.956489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.10902 -40.66589 -38.69837 -35.90761 -34.13158 -32.65303 -31.95841 -31.66275 -30.04592 -27.21748 -26.82230 -24.27182 -23.14903 -22.34161 -21.67666 -20.00477 -19.24128 -17.98703 -17.87930 -17.35940 -17.06892 -16.93705 -16.10704 -16.00339 -15.51752 -15.27480 -14.61836 -14.48346 -14.02579 -13.74712 -13.63233 -13.42221 -13.21878 -13.14058 -13.10387 -12.95530 -12.79137 -12.74060 -12.36744 -12.22348 -12.15765 -11.60490 -11.26912 -11.09737 -10.83051 -10.74727 -10.58434 -10.20358 -9.86137 -9.56446 -8.27750 -6.44912 1.33805 1.47169 1.50631 1.59621 1.67343 1.99313 2.40985 2.94235 3.39678 3.54494 3.66457 3.74366 3.97133 4.10865 4.15319 4.21440 4.32162 4.36655 4.46359 4.50029 4.54077 4.57777 4.60547 4.75617 4.79076 4.89030 4.91766 5.07802 5.08924 5.13698 5.16304 5.18865 5.24601 5.32274 5.38528 5.72499 5.73227 5.90787 6.03844 6.60758 6.91383 7.18430 7.29535 7.48385 8.78605 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.004656 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.845256 B = 6012.060715 C = 6255.356878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.034 3.966 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.218 3.782 10 O -0.588 6.588 11 C 0.104 3.896 12 N -0.637 5.637 13 C 0.532 3.468 14 O -0.591 6.591 15 C -0.089 4.089 16 H 0.098 0.902 17 C -0.099 4.099 18 C -0.056 4.056 19 H 0.101 0.899 20 C -0.178 4.178 21 C -0.149 4.149 22 C -0.044 4.044 23 H 0.067 0.933 24 C -0.108 4.108 25 C -0.108 4.108 26 C 0.094 3.906 27 H 0.277 0.723 28 H 0.389 0.611 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 -8.033 11.800 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.167 4.167 3 Si 0.795 3.205 4 H -0.205 1.205 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.091 0.909 9 C 0.177 3.823 10 O -0.401 6.401 11 C -0.019 4.019 12 N -0.370 5.370 13 C 0.324 3.676 14 O -0.473 6.473 15 C -0.110 4.110 16 H 0.116 0.884 17 C -0.137 4.137 18 C -0.074 4.074 19 H 0.120 0.880 20 C -0.196 4.196 21 C -0.167 4.167 22 C -0.063 4.063 23 H 0.085 0.915 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.028 4.028 27 H 0.087 0.913 28 H 0.245 0.755 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.440 -9.187 11.432 14.868 hybrid contribution 0.371 1.287 -0.593 1.465 sum -2.070 -7.899 10.839 13.571 Atomic orbital electron populations 1.69317 1.07168 1.29009 1.50310 1.25750 0.95756 1.02625 0.92522 0.85361 0.78744 0.78204 0.78177 1.20512 1.20429 1.18980 1.21649 0.94137 0.90559 1.52761 0.90894 1.19781 0.85470 0.91603 0.85464 1.86034 1.45787 1.48212 1.60052 1.23303 0.94686 0.91714 0.92165 1.49771 1.42121 1.05256 1.39889 1.20890 0.83280 0.79951 0.83482 1.90583 1.59180 1.41436 1.56072 1.21436 0.97055 0.98482 0.94003 0.88364 1.21649 1.01360 0.98263 0.92457 1.20735 0.95698 0.93080 0.97923 0.88033 1.23990 0.99814 0.98534 0.97226 1.23684 0.97109 0.99852 0.96100 1.20489 0.95094 0.91636 0.99052 0.91491 1.21682 0.96813 1.02064 0.93971 1.21695 0.94828 1.00992 0.97020 1.23849 1.00322 0.77593 1.01083 0.91284 0.75459 0.88307 0.93323 0.93089 0.89159 0.85501 0.87683 0.90637 0.90557 0.90064 0.90398 0.91939 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.66 11.01 21.45 0.24 -45.42 16 2 C 0.03 1.65 5.39 84.66 0.46 2.10 16 3 Si 0.97 38.73 29.54 68.60 2.03 40.75 16 4 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.55 -27.42 8.69 25.60 0.22 -27.19 16 8 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.22 10.53 1.57 -11.29 -0.02 10.52 16 10 O -0.59 -31.05 13.54 -148.98 -2.02 -33.07 16 11 C 0.10 4.69 8.03 83.17 0.67 5.36 16 12 N -0.64 -27.27 3.49 -859.36 -3.00 -30.27 16 13 C 0.53 21.98 6.86 87.66 0.60 22.58 16 14 O -0.59 -27.87 15.75 -3.03 -0.05 -27.92 16 15 C -0.09 -2.78 2.40 -11.38 -0.03 -2.81 16 16 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 17 C -0.10 -2.61 4.73 30.74 0.15 -2.47 16 18 C -0.06 -1.19 3.59 -10.75 -0.04 -1.23 16 19 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 20 C -0.18 -4.41 9.81 25.00 0.25 -4.16 16 21 C -0.15 -4.31 8.26 25.00 0.21 -4.10 16 22 C -0.04 -1.23 2.68 -10.76 -0.03 -1.26 16 23 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 24 C -0.11 -2.18 5.67 30.77 0.17 -2.00 16 25 C -0.11 -1.89 5.68 30.78 0.17 -1.71 16 26 C 0.09 3.98 7.04 83.09 0.58 4.56 16 27 H 0.28 13.02 8.31 -92.70 -0.77 12.25 16 28 H 0.39 20.68 6.33 -74.05 -0.47 20.21 16 29 H 0.10 4.06 8.10 -2.39 -0.02 4.04 16 30 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.53 7.20 -2.39 -0.02 1.52 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.11 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.09 3.61 8.10 -2.39 -0.02 3.59 16 Total: -1.00 -59.37 318.37 1.13 -58.23 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: 0.56 Total: 39.51 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 3.37 Total: -1.82 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -2.76 Total: -75.69 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -2.06 Total: -60.98 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.75 kcal Total: -59.37 1.13 -58.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329659210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.315 kcal (2) G-P(sol) polarization free energy of solvation -59.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds