Wall clock time and date at job start Mon Mar 30 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 120.00306 * 2 1 4 4 C 1.38207 * 120.00099 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00018 * 359.74329 * 4 3 2 6 6 C 1.38215 * 119.99707 * 0.51016 * 5 4 3 7 7 C 1.50697 * 119.99741 * 179.76673 * 6 5 4 8 8 H 1.09008 * 109.46831 * 204.72863 * 7 6 5 9 9 O 1.42902 * 109.47291 * 324.72279 * 7 6 5 10 10 C 1.53001 * 109.47578 * 84.72662 * 7 6 5 11 11 N 1.46895 * 109.47414 * 179.97438 * 10 7 6 12 12 C 1.47959 * 110.99833 * 169.99908 * 11 10 7 13 13 C 1.53940 * 86.18080 * 222.42060 * 12 11 10 14 14 O 1.42894 * 113.73242 * 269.25760 * 13 12 11 15 15 C 1.50704 * 113.73337 * 138.07823 * 13 12 11 16 16 H 1.07993 * 119.99785 * 17.16846 * 15 13 12 17 17 C 1.37875 * 119.99953 * 197.16049 * 15 13 12 18 18 N 1.31509 * 120.00245 * 194.37771 * 17 15 13 19 19 Si 1.86806 * 119.99870 * 14.37854 * 17 15 13 20 20 H 1.48502 * 109.47067 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47191 * 299.99961 * 19 17 15 22 22 H 1.48499 * 109.46891 * 60.00040 * 19 17 15 23 23 C 1.48195 * 111.06931 * 70.56634 * 11 10 7 24 24 C 1.38218 * 119.99854 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.46945 * 270.02423 * 1 2 3 26 26 H 1.09000 * 109.47240 * 30.02230 * 1 2 3 27 27 H 1.09001 * 109.47338 * 150.01922 * 1 2 3 28 28 H 1.07996 * 119.99701 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00179 * 180.02562 * 4 3 2 30 30 H 1.08000 * 120.00046 * 180.27518 * 5 4 3 31 31 H 0.96699 * 113.99429 * 60.00213 * 9 7 6 32 32 H 1.09006 * 109.46775 * 59.99491 * 10 7 6 33 33 H 1.09004 * 109.46593 * 300.00368 * 10 7 6 34 34 H 1.08996 * 113.75956 * 108.10580 * 12 11 10 35 35 H 1.09002 * 113.86313 * 336.74864 * 12 11 10 36 36 H 0.96707 * 114.00278 * 174.15555 * 14 13 12 37 37 H 0.97003 * 119.99954 * 354.86937 * 18 17 15 38 38 H 1.09000 * 113.75689 * 23.24058 * 23 11 10 39 39 H 1.08991 * 113.82610 * 251.81060 * 23 11 10 40 40 H 1.08005 * 119.99663 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0064 6 6 3.5806 -1.1971 0.0011 7 6 4.3340 -2.5021 0.0023 8 1 3.7092 -3.2828 -0.4319 9 8 5.5283 -2.3634 -0.7701 10 6 4.6973 -2.8802 1.4396 11 7 5.4312 -4.1527 1.4407 12 6 6.0054 -4.4324 2.7754 13 6 7.2706 -4.8830 2.0229 14 8 7.2835 -6.2753 1.7018 15 6 8.5539 -4.4150 2.6596 16 1 8.5545 -4.0699 3.6829 17 6 9.7272 -4.4277 1.9356 18 7 10.8815 -4.2958 2.5517 19 14 9.6773 -4.6323 0.0795 20 1 11.0614 -4.6123 -0.4582 21 1 9.0331 -5.9268 -0.2587 22 1 8.8976 -3.5198 -0.5203 23 6 6.7882 -3.9855 0.8690 24 6 2.1980 -1.1970 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 0.0010 30 1 5.3517 -0.0002 0.0113 31 1 6.1330 -1.6845 -0.4407 32 1 3.7863 -2.9860 2.0288 33 1 5.3221 -2.0995 1.8737 34 1 5.5021 -5.2380 3.3099 35 1 6.1521 -3.5426 3.3876 36 1 8.0322 -6.5454 1.1526 37 1 10.9049 -4.1152 3.5045 38 1 7.1638 -2.9636 0.9210 39 1 6.9091 -4.4346 -0.1167 40 1 1.6579 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332066313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:25 Heat of formation + Delta-G solvation = -37.560457 kcal Electronic energy + Delta-G solvation = -21753.016876 eV Core-core repulsion = 18533.769791 eV Total energy + Delta-G solvation = -3219.247085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09706 -39.12860 -36.84206 -34.33178 -32.84848 -32.48317 -31.87939 -29.52412 -27.08558 -26.48112 -25.39923 -24.10294 -22.30953 -21.42377 -20.41028 -19.00946 -17.81515 -17.27224 -16.08075 -15.98835 -15.66136 -15.05474 -14.91297 -14.65129 -14.14409 -13.98298 -13.82184 -13.36768 -13.24523 -12.89856 -12.69300 -12.40940 -12.32950 -11.95036 -11.82732 -11.68910 -11.25120 -11.17696 -10.97889 -10.81461 -10.53875 -10.25399 -9.85733 -9.63698 -9.22434 -8.91658 -8.83805 -8.71891 -8.36441 -7.94458 -6.60449 -4.33723 1.19176 1.25088 3.23943 3.35275 3.48971 3.57804 4.30928 4.34204 4.52408 4.66124 4.73575 4.82372 4.97729 5.00971 5.12265 5.16722 5.27167 5.35347 5.36220 5.48772 5.57679 5.61297 5.76516 5.80598 5.88841 5.91231 5.95417 6.08308 6.23007 6.32859 6.41591 6.48199 6.52159 6.63918 6.86181 6.96209 7.03704 7.69402 7.75323 7.78583 8.18076 8.68663 8.94161 9.41215 10.74397 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.004396 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.200967 B = 6367.402673 C = 6692.620403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.104 4.104 7 C 0.153 3.847 8 H 0.112 0.888 9 O -0.546 6.546 10 C -0.007 4.007 11 N -0.471 5.471 12 C 0.023 3.977 13 C 0.200 3.800 14 O -0.566 6.566 15 C -0.619 4.619 16 H 0.062 0.938 17 C 0.034 3.966 18 N -0.894 5.894 19 Si 1.046 2.954 20 H -0.284 1.284 21 H -0.280 1.280 22 H -0.271 1.271 23 C -0.015 4.015 24 C -0.111 4.111 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.370 0.630 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.363 0.637 37 H 0.271 0.729 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.768 10.260 -5.820 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.135 4.135 6 C -0.105 4.105 7 C 0.093 3.907 8 H 0.129 0.871 9 O -0.351 6.351 10 C -0.136 4.136 11 N -0.194 5.194 12 C -0.105 4.105 13 C 0.159 3.841 14 O -0.373 6.373 15 C -0.657 4.657 16 H 0.081 0.919 17 C -0.173 4.173 18 N -0.527 5.527 19 Si 0.874 3.126 20 H -0.210 1.210 21 H -0.207 1.207 22 H -0.196 1.196 23 C -0.144 4.144 24 C -0.129 4.129 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.218 0.782 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.212 0.788 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.102 9.191 -7.433 20.790 hybrid contribution 0.228 1.496 1.899 2.428 sum -16.874 10.687 -5.534 20.726 Atomic orbital electron populations 1.20786 0.91209 1.02721 1.02320 1.19904 0.96033 0.93125 0.99664 1.21013 0.94274 0.97414 1.01681 1.21091 0.94288 0.97876 0.99816 1.20914 0.99937 0.92075 1.00607 1.20665 0.94463 0.96066 0.99267 1.20805 0.85784 0.92598 0.91499 0.87068 1.86689 1.31284 1.61520 1.55637 1.23259 1.00217 0.93871 0.96238 1.68549 1.14403 1.25432 1.11029 1.23923 0.95130 0.99715 0.91736 1.20396 0.93614 0.79608 0.90521 1.86346 1.51258 1.25946 1.73760 1.22334 0.93550 1.48795 1.00983 0.91949 1.25852 0.91856 0.93113 1.06431 1.70830 1.26187 1.43006 1.12706 0.84066 0.76052 0.77646 0.74862 1.21021 1.20685 1.19645 1.24902 0.88551 1.00675 1.00287 1.20876 0.93300 0.97773 1.00939 0.91180 0.91643 0.91487 0.86260 0.86007 0.86179 0.78160 0.90466 0.94073 0.90464 0.91354 0.78843 0.91904 0.91476 0.90698 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.52 16 3 C -0.13 -1.27 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.20 10.05 -39.58 -0.40 -1.59 16 5 C -0.12 -1.41 9.33 -39.58 -0.37 -1.78 16 6 C -0.10 -1.32 5.00 -104.63 -0.52 -1.85 16 7 C 0.15 2.22 3.47 -27.88 -0.10 2.12 16 8 H 0.11 1.64 8.05 -51.92 -0.42 1.23 16 9 O -0.55 -8.68 10.89 -35.23 -0.38 -9.07 16 10 C -0.01 -0.10 4.65 -3.83 -0.02 -0.12 16 11 N -0.47 -9.37 6.26 -238.02 -1.49 -10.86 16 12 C 0.02 0.50 7.36 -2.76 -0.02 0.48 16 13 C 0.20 4.85 1.07 -90.83 -0.10 4.76 16 14 O -0.57 -14.11 13.47 -35.23 -0.47 -14.59 16 15 C -0.62 -17.07 9.04 -34.44 -0.31 -17.38 16 16 H 0.06 1.85 8.06 -52.49 -0.42 1.43 16 17 C 0.03 0.95 5.44 -17.82 -0.10 0.86 16 18 N -0.89 -26.55 13.70 55.43 0.76 -25.79 16 19 Si 1.05 24.16 24.55 -169.99 -4.17 19.98 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.00 5.81 56.52 0.33 -5.67 16 22 H -0.27 -5.83 6.48 56.52 0.37 -5.46 16 23 C -0.02 -0.33 2.75 -2.63 -0.01 -0.34 16 24 C -0.11 -1.28 9.34 -39.58 -0.37 -1.65 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.12 1.32 6.62 -52.49 -0.35 0.97 16 31 H 0.37 5.08 6.73 45.56 0.31 5.39 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.07 1.41 7.75 -51.93 -0.40 1.01 16 36 H 0.36 8.52 6.07 45.56 0.28 8.80 16 37 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 38 H 0.07 1.43 6.76 -51.93 -0.35 1.08 16 39 H 0.07 1.66 6.80 -51.93 -0.35 1.30 16 40 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -31.29 319.39 -8.64 -39.93 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -4.75 Total: 15.74 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.95 Total: -20.16 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.73 Total: -36.65 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.86 Total: -23.65 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -4.17 Total: 19.98 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.29 -8.64 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332066313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.373 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds