Wall clock time and date at job start Mon Mar 30 2020 02:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 120.00306 * 2 1 4 4 C 1.38207 * 120.00099 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00018 * 359.74329 * 4 3 2 6 6 C 1.38215 * 119.99707 * 0.51016 * 5 4 3 7 7 C 1.50697 * 119.99741 * 179.76673 * 6 5 4 8 8 H 1.09008 * 109.46831 * 204.72863 * 7 6 5 9 9 O 1.42902 * 109.47291 * 324.72279 * 7 6 5 10 10 C 1.53001 * 109.47578 * 84.72662 * 7 6 5 11 11 N 1.46895 * 109.47414 * 179.97438 * 10 7 6 12 12 C 1.47959 * 110.99833 * 169.99908 * 11 10 7 13 13 C 1.53940 * 86.18080 * 222.42060 * 12 11 10 14 14 O 1.42894 * 113.73242 * 269.25760 * 13 12 11 15 15 C 1.50704 * 113.73337 * 138.07823 * 13 12 11 16 16 H 1.07993 * 119.99785 * 17.16846 * 15 13 12 17 17 C 1.37875 * 119.99953 * 197.16049 * 15 13 12 18 18 N 1.31509 * 120.00245 * 194.37771 * 17 15 13 19 19 Si 1.86806 * 119.99870 * 14.37854 * 17 15 13 20 20 H 1.48502 * 109.47067 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47191 * 299.99961 * 19 17 15 22 22 H 1.48499 * 109.46891 * 60.00040 * 19 17 15 23 23 C 1.48195 * 111.06931 * 70.56634 * 11 10 7 24 24 C 1.38218 * 119.99854 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.46945 * 270.02423 * 1 2 3 26 26 H 1.09000 * 109.47240 * 30.02230 * 1 2 3 27 27 H 1.09001 * 109.47338 * 150.01922 * 1 2 3 28 28 H 1.07996 * 119.99701 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00179 * 180.02562 * 4 3 2 30 30 H 1.08000 * 120.00046 * 180.27518 * 5 4 3 31 31 H 0.96699 * 113.99429 * 60.00213 * 9 7 6 32 32 H 1.09006 * 109.46775 * 59.99491 * 10 7 6 33 33 H 1.09004 * 109.46593 * 300.00368 * 10 7 6 34 34 H 1.08996 * 113.75956 * 108.10580 * 12 11 10 35 35 H 1.09002 * 113.86313 * 336.74864 * 12 11 10 36 36 H 0.96707 * 114.00278 * 174.15555 * 14 13 12 37 37 H 0.97003 * 119.99954 * 354.86937 * 18 17 15 38 38 H 1.09000 * 113.75689 * 23.24058 * 23 11 10 39 39 H 1.08991 * 113.82610 * 251.81060 * 23 11 10 40 40 H 1.08005 * 119.99663 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0064 6 6 3.5806 -1.1971 0.0011 7 6 4.3340 -2.5021 0.0023 8 1 3.7092 -3.2828 -0.4319 9 8 5.5283 -2.3634 -0.7701 10 6 4.6973 -2.8802 1.4396 11 7 5.4312 -4.1527 1.4407 12 6 6.0054 -4.4324 2.7754 13 6 7.2706 -4.8830 2.0229 14 8 7.2835 -6.2753 1.7018 15 6 8.5539 -4.4150 2.6596 16 1 8.5545 -4.0699 3.6829 17 6 9.7272 -4.4277 1.9356 18 7 10.8815 -4.2958 2.5517 19 14 9.6773 -4.6323 0.0795 20 1 11.0614 -4.6123 -0.4582 21 1 9.0331 -5.9268 -0.2587 22 1 8.8976 -3.5198 -0.5203 23 6 6.7882 -3.9855 0.8690 24 6 2.1980 -1.1970 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 0.0010 30 1 5.3517 -0.0002 0.0113 31 1 6.1330 -1.6845 -0.4407 32 1 3.7863 -2.9860 2.0288 33 1 5.3221 -2.0995 1.8737 34 1 5.5021 -5.2380 3.3099 35 1 6.1521 -3.5426 3.3876 36 1 8.0322 -6.5454 1.1526 37 1 10.9049 -4.1152 3.5045 38 1 7.1638 -2.9636 0.9210 39 1 6.9091 -4.4346 -0.1167 40 1 1.6579 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332066313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:24 Heat of formation + Delta-G solvation = -63.275489 kcal Electronic energy + Delta-G solvation = -21754.131964 eV Core-core repulsion = 18533.769791 eV Total energy + Delta-G solvation = -3220.362173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38953 -40.37651 -38.05657 -36.12313 -34.64126 -33.65193 -32.85933 -30.90842 -28.21320 -27.74595 -27.12101 -25.59678 -23.19101 -22.86776 -21.38797 -20.85619 -19.87647 -18.28015 -17.49407 -17.24907 -16.97278 -16.46605 -16.39914 -15.90974 -15.39301 -15.17426 -15.11838 -14.63705 -14.48039 -14.25040 -14.00931 -13.76515 -13.55122 -13.13833 -13.00537 -12.85784 -12.63259 -12.53266 -12.31423 -12.09949 -12.07206 -11.84880 -11.60288 -11.16011 -11.03133 -10.85789 -10.20202 -9.77846 -9.70408 -9.54022 -8.82026 -6.58875 0.35361 0.44132 1.40882 1.50073 1.67420 2.38359 2.71424 2.90686 2.96196 3.45352 3.50121 3.81368 3.87388 3.88274 4.02425 4.05357 4.16277 4.19249 4.23158 4.44069 4.49379 4.52729 4.61837 4.71212 4.76149 4.83632 4.86785 4.88849 4.99346 5.11082 5.23188 5.28840 5.32943 5.52389 5.61480 5.66119 5.71066 5.87503 6.07924 6.14113 6.39111 6.64044 7.02745 7.25705 8.50198 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.004396 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.200967 B = 6367.402673 C = 6692.620403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.134 4.134 6 C -0.117 4.117 7 C 0.161 3.839 8 H 0.108 0.892 9 O -0.561 6.561 10 C -0.004 4.004 11 N -0.470 5.470 12 C 0.026 3.974 13 C 0.181 3.819 14 O -0.572 6.572 15 C -0.626 4.626 16 H 0.025 0.975 17 C -0.007 4.007 18 N -0.924 5.924 19 Si 1.079 2.921 20 H -0.289 1.289 21 H -0.253 1.253 22 H -0.243 1.243 23 C 0.001 3.999 24 C -0.123 4.123 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.378 0.622 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.367 0.633 37 H 0.256 0.744 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.045 11.314 -7.470 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.152 4.152 6 C -0.118 4.118 7 C 0.102 3.898 8 H 0.126 0.874 9 O -0.368 6.368 10 C -0.133 4.133 11 N -0.192 5.192 12 C -0.102 4.102 13 C 0.141 3.859 14 O -0.381 6.381 15 C -0.663 4.663 16 H 0.043 0.957 17 C -0.208 4.208 18 N -0.559 5.559 19 Si 0.899 3.101 20 H -0.215 1.215 21 H -0.178 1.178 22 H -0.167 1.167 23 C -0.128 4.128 24 C -0.141 4.141 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.141 0.859 31 H 0.227 0.773 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.407 10.249 -9.061 23.744 hybrid contribution 0.887 1.215 2.520 2.934 sum -18.520 11.464 -6.542 22.742 Atomic orbital electron populations 1.20837 0.89260 1.03713 1.03105 1.20257 0.97566 0.92767 0.98664 1.21382 0.94281 0.98438 1.00529 1.21379 0.94869 0.98179 0.99246 1.21083 1.00355 0.92483 1.01235 1.20508 0.94926 0.95286 1.01114 1.20678 0.85517 0.93679 0.89930 0.87396 1.86647 1.31995 1.62056 1.56147 1.23318 1.00119 0.91860 0.97968 1.68479 1.13482 1.27803 1.09464 1.23875 0.93938 0.99865 0.92551 1.20551 0.93020 0.79648 0.92720 1.86330 1.51430 1.26264 1.74041 1.22498 0.95783 1.48506 0.99540 0.95698 1.27236 0.91168 0.91945 1.10420 1.70960 1.27466 1.45560 1.11939 0.83701 0.76515 0.79960 0.69882 1.21539 1.17818 1.16722 1.24659 0.89285 0.99846 0.99057 1.21077 0.93009 0.98856 1.01128 0.90385 0.90258 0.90974 0.83875 0.84135 0.85891 0.77293 0.89037 0.94201 0.90176 0.91121 0.78339 0.93479 0.91284 0.90494 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.09 -1.67 5.88 -19.86 -0.12 -1.79 16 3 C -0.13 -2.22 9.70 22.27 0.22 -2.01 16 4 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 5 C -0.13 -2.98 9.33 22.27 0.21 -2.77 16 6 C -0.12 -2.80 5.00 -19.87 -0.10 -2.90 16 7 C 0.16 4.41 3.47 29.85 0.10 4.51 16 8 H 0.11 3.00 8.05 -2.38 -0.02 2.98 16 9 O -0.56 -16.84 10.89 -148.98 -1.62 -18.46 16 10 C 0.00 -0.11 4.65 86.30 0.40 0.29 16 11 N -0.47 -17.86 6.26 -910.16 -5.70 -23.56 16 12 C 0.03 1.11 7.36 86.41 0.64 1.75 16 13 C 0.18 8.70 1.07 -10.89 -0.01 8.69 16 14 O -0.57 -27.94 13.47 -148.98 -2.01 -29.94 16 15 C -0.63 -35.12 9.04 25.60 0.23 -34.89 16 16 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 17 C -0.01 -0.41 5.44 84.65 0.46 0.05 16 18 N -0.92 -56.30 13.70 21.45 0.29 -56.00 16 19 Si 1.08 47.57 24.55 68.60 1.68 49.25 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.25 -10.01 5.81 99.48 0.58 -9.43 16 22 H -0.24 -9.62 6.48 99.48 0.64 -8.98 16 23 C 0.00 0.02 2.75 86.36 0.24 0.26 16 24 C -0.12 -2.59 9.34 22.27 0.21 -2.38 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 26 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 27 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 28 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 29 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.12 2.55 6.62 -2.91 -0.02 2.53 16 31 H 0.38 9.76 6.73 -74.06 -0.50 9.26 16 32 H 0.09 2.53 8.14 -2.38 -0.02 2.52 16 33 H 0.04 1.24 7.70 -2.39 -0.02 1.22 16 34 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.07 2.90 7.75 -2.39 -0.02 2.88 16 36 H 0.37 16.70 6.07 -74.05 -0.45 16.26 16 37 H 0.26 15.85 8.73 -92.71 -0.81 15.04 16 38 H 0.07 2.82 6.76 -2.39 -0.02 2.80 16 39 H 0.08 3.19 6.80 -2.39 -0.02 3.18 16 40 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -67.29 319.39 -4.06 -71.35 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -0.13 Total: 41.24 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 3.41 Total: -33.87 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -5.41 Total: -79.56 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -3.63 Total: -48.41 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.68 Total: 49.25 kcal Total: -67.29 -4.06 -71.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332066313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.076 kcal (2) G-P(sol) polarization free energy of solvation -67.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds